data_8P2Q # _model_server_result.job_id Dk8HbXQfVtJSc6XJkSjDmQ _model_server_result.datetime_utc '2024-11-10 01:26:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8p2q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":207}' # _entry.id 8P2Q # _exptl.entry_id 8P2Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8P2Q _cell.length_a 77.143 _cell.length_b 77.143 _cell.length_c 37.695 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8P2Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 6 1_555 A SG CYS 145 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 48 A CYS 30 1_555 A SG CYS 133 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf3 A SG CYS 82 A CYS 64 1_555 A SG CYS 98 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf4 A SG CYS 94 A CYS 76 1_555 A SG CYS 112 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc1 A O SER 78 A SER 60 1_555 H NA NA . A NA 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc2 A O CYS 82 A CYS 64 1_555 H NA NA . A NA 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? metalc ? metalc3 A OG SER 90 A SER 72 1_555 H NA NA . A NA 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc4 A O ARG 91 A ARG 73 1_555 H NA NA . A NA 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc5 A OD1 ASP 119 A ASP 101 1_555 B TB WRT . A WRT 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc6 A OD2 ASP 119 A ASP 101 1_555 B TB WRT . A WRT 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc7 H NA NA . A NA 207 1_555 I O HOH . A HOH 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc8 H NA NA . A NA 207 1_555 I O HOH . A HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8P2Q _atom_sites.fract_transf_matrix[1][1] 0.012963 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012963 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026529 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 WRT A 1 201 1 WRT TB . C 3 CL A 1 202 2 CL CL . D 3 CL A 1 203 4 CL CL . E 3 CL A 1 204 5 CL CL . F 3 CL A 1 205 6 CL CL . G 3 CL A 1 206 7 CL CL . H 4 NA A 1 207 1 NA NA . I 5 HOH A 1 301 146 HOH HOH . I 5 HOH A 2 302 144 HOH HOH . I 5 HOH A 3 303 117 HOH HOH . I 5 HOH A 4 304 37 HOH HOH . I 5 HOH A 5 305 151 HOH HOH . I 5 HOH A 6 306 43 HOH HOH . I 5 HOH A 7 307 134 HOH HOH . I 5 HOH A 8 308 50 HOH HOH . I 5 HOH A 9 309 99 HOH HOH . I 5 HOH A 10 310 48 HOH HOH . I 5 HOH A 11 311 36 HOH HOH . I 5 HOH A 12 312 64 HOH HOH . I 5 HOH A 13 313 8 HOH HOH . I 5 HOH A 14 314 136 HOH HOH . I 5 HOH A 15 315 20 HOH HOH . I 5 HOH A 16 316 3 HOH HOH . I 5 HOH A 17 317 63 HOH HOH . I 5 HOH A 18 318 98 HOH HOH . I 5 HOH A 19 319 41 HOH HOH . I 5 HOH A 20 320 82 HOH HOH . I 5 HOH A 21 321 59 HOH HOH . I 5 HOH A 22 322 38 HOH HOH . I 5 HOH A 23 323 60 HOH HOH . I 5 HOH A 24 324 69 HOH HOH . I 5 HOH A 25 325 40 HOH HOH . I 5 HOH A 26 326 88 HOH HOH . I 5 HOH A 27 327 138 HOH HOH . I 5 HOH A 28 328 118 HOH HOH . I 5 HOH A 29 329 78 HOH HOH . I 5 HOH A 30 330 139 HOH HOH . I 5 HOH A 31 331 17 HOH HOH . I 5 HOH A 32 332 32 HOH HOH . I 5 HOH A 33 333 96 HOH HOH . I 5 HOH A 34 334 97 HOH HOH . I 5 HOH A 35 335 140 HOH HOH . I 5 HOH A 36 336 1 HOH HOH . I 5 HOH A 37 337 49 HOH HOH . I 5 HOH A 38 338 11 HOH HOH . I 5 HOH A 39 339 132 HOH HOH . I 5 HOH A 40 340 53 HOH HOH . I 5 HOH A 41 341 24 HOH HOH . I 5 HOH A 42 342 87 HOH HOH . I 5 HOH A 43 343 66 HOH HOH . I 5 HOH A 44 344 114 HOH HOH . I 5 HOH A 45 345 25 HOH HOH . I 5 HOH A 46 346 52 HOH HOH . I 5 HOH A 47 347 121 HOH HOH . I 5 HOH A 48 348 9 HOH HOH . I 5 HOH A 49 349 89 HOH HOH . I 5 HOH A 50 350 42 HOH HOH . I 5 HOH A 51 351 72 HOH HOH . I 5 HOH A 52 352 47 HOH HOH . I 5 HOH A 53 353 81 HOH HOH . I 5 HOH A 54 354 155 HOH HOH . I 5 HOH A 55 355 6 HOH HOH . I 5 HOH A 56 356 33 HOH HOH . I 5 HOH A 57 357 130 HOH HOH . I 5 HOH A 58 358 21 HOH HOH . I 5 HOH A 59 359 7 HOH HOH . I 5 HOH A 60 360 26 HOH HOH . I 5 HOH A 61 361 23 HOH HOH . I 5 HOH A 62 362 122 HOH HOH . I 5 HOH A 63 363 27 HOH HOH . I 5 HOH A 64 364 90 HOH HOH . I 5 HOH A 65 365 129 HOH HOH . I 5 HOH A 66 366 77 HOH HOH . I 5 HOH A 67 367 113 HOH HOH . I 5 HOH A 68 368 18 HOH HOH . I 5 HOH A 69 369 4 HOH HOH . I 5 HOH A 70 370 106 HOH HOH . I 5 HOH A 71 371 46 HOH HOH . I 5 HOH A 72 372 145 HOH HOH . I 5 HOH A 73 373 79 HOH HOH . I 5 HOH A 74 374 109 HOH HOH . I 5 HOH A 75 375 115 HOH HOH . I 5 HOH A 76 376 61 HOH HOH . I 5 HOH A 77 377 29 HOH HOH . I 5 HOH A 78 378 34 HOH HOH . I 5 HOH A 79 379 5 HOH HOH . I 5 HOH A 80 380 13 HOH HOH . I 5 HOH A 81 381 153 HOH HOH . I 5 HOH A 82 382 119 HOH HOH . I 5 HOH A 83 383 133 HOH HOH . I 5 HOH A 84 384 84 HOH HOH . I 5 HOH A 85 385 39 HOH HOH . I 5 HOH A 86 386 75 HOH HOH . I 5 HOH A 87 387 71 HOH HOH . I 5 HOH A 88 388 56 HOH HOH . I 5 HOH A 89 389 141 HOH HOH . I 5 HOH A 90 390 28 HOH HOH . I 5 HOH A 91 391 70 HOH HOH . I 5 HOH A 92 392 111 HOH HOH . I 5 HOH A 93 393 148 HOH HOH . I 5 HOH A 94 394 108 HOH HOH . I 5 HOH A 95 395 57 HOH HOH . I 5 HOH A 96 396 137 HOH HOH . I 5 HOH A 97 397 120 HOH HOH . I 5 HOH A 98 398 92 HOH HOH . I 5 HOH A 99 399 58 HOH HOH . I 5 HOH A 100 400 110 HOH HOH . I 5 HOH A 101 401 19 HOH HOH . I 5 HOH A 102 402 14 HOH HOH . I 5 HOH A 103 403 62 HOH HOH . I 5 HOH A 104 404 45 HOH HOH . I 5 HOH A 105 405 12 HOH HOH . I 5 HOH A 106 406 73 HOH HOH . I 5 HOH A 107 407 31 HOH HOH . I 5 HOH A 108 408 149 HOH HOH . I 5 HOH A 109 409 101 HOH HOH . I 5 HOH A 110 410 10 HOH HOH . I 5 HOH A 111 411 156 HOH HOH . I 5 HOH A 112 412 131 HOH HOH . I 5 HOH A 113 413 16 HOH HOH . I 5 HOH A 114 414 127 HOH HOH . I 5 HOH A 115 415 142 HOH HOH . I 5 HOH A 116 416 143 HOH HOH . I 5 HOH A 117 417 74 HOH HOH . I 5 HOH A 118 418 107 HOH HOH . I 5 HOH A 119 419 154 HOH HOH . I 5 HOH A 120 420 86 HOH HOH . I 5 HOH A 121 421 83 HOH HOH . I 5 HOH A 122 422 126 HOH HOH . I 5 HOH A 123 423 123 HOH HOH . I 5 HOH A 124 424 44 HOH HOH . I 5 HOH A 125 425 76 HOH HOH . I 5 HOH A 126 426 94 HOH HOH . I 5 HOH A 127 427 100 HOH HOH . I 5 HOH A 128 428 112 HOH HOH . I 5 HOH A 129 429 135 HOH HOH . I 5 HOH A 130 430 95 HOH HOH . I 5 HOH A 131 431 93 HOH HOH . I 5 HOH A 132 432 51 HOH HOH . I 5 HOH A 133 433 125 HOH HOH . I 5 HOH A 134 434 15 HOH HOH . I 5 HOH A 135 435 152 HOH HOH . I 5 HOH A 136 436 116 HOH HOH . I 5 HOH A 137 437 103 HOH HOH . I 5 HOH A 138 438 54 HOH HOH . I 5 HOH A 139 439 30 HOH HOH . I 5 HOH A 140 440 85 HOH HOH . I 5 HOH A 141 441 67 HOH HOH . I 5 HOH A 142 442 104 HOH HOH . I 5 HOH A 143 443 124 HOH HOH . I 5 HOH A 144 444 22 HOH HOH . I 5 HOH A 145 445 65 HOH HOH . I 5 HOH A 146 446 160 HOH HOH . I 5 HOH A 147 447 55 HOH HOH . I 5 HOH A 148 448 128 HOH HOH . I 5 HOH A 149 449 105 HOH HOH . I 5 HOH A 150 450 150 HOH HOH . I 5 HOH A 151 451 157 HOH HOH . I 5 HOH A 152 452 91 HOH HOH . I 5 HOH A 153 453 80 HOH HOH . I 5 HOH A 154 454 35 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 4 _atom_site.Cartn_x -7.102 _atom_site.Cartn_y -13.101 _atom_site.Cartn_z 13.009 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 20.88 _atom_site.pdbx_formal_charge 1 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 207 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #