data_8P36 # _model_server_result.job_id ePx9YPHh2nklK4A9mB19lQ _model_server_result.datetime_utc '2024-12-21 13:11:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8p36 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 8P36 # _exptl.entry_id 8P36 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 246.26 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,4-bisacetamido-2,4,6-trideoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8P36 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8P36 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 120 A CYS 120 1_555 A SG CYS 154 A CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A OG SER 63 A SER 63 1_555 C C1 B6D . A B6D 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale2 A CB SER 69 A SER 69 1_555 B O4P G3P . A G3P 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.398 ? # _chem_comp.formula 'C10 H18 N2 O5' _chem_comp.formula_weight 246.26 _chem_comp.id B6D _chem_comp.mon_nstd_flag . _chem_comp.name 2,4-bisacetamido-2,4,6-trideoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms 2,4-bis(acetylamino)-2,4,6-trideoxy-beta-D-glucopyranose;2,4-diacetamido-2,4,6-trideoxy-beta-D-glucopyranose;bacillosamine;2,4-bisacetamido-2,4,6-trideoxy-beta-D-glucose;2,4-bisacetamido-2,4,6-trideoxy-D-glucose;2,4-bisacetamido-2,4,6-trideoxy-glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 B6D sing 70 n n C1 O1 B6D sing 71 n n N2 C7 B6D sing 72 n n C3 O3 B6D sing 73 n n C3 C2 B6D sing 74 n n C4 C3 B6D sing 75 n n C4 H4 B6D sing 76 n n C5 C4 B6D sing 77 n n C5 O5 B6D sing 78 n n C6 C5 B6D sing 79 n n C6 H61 B6D sing 80 n n C7 O7 B6D doub 81 n n C7 C8 B6D sing 82 n n C8 H81 B6D sing 83 n n C8 H82 B6D sing 84 n n C9 H9A B6D sing 85 n n C9 C10 B6D sing 86 n n C2 N2 B6D sing 87 n n C2 H2 B6D sing 88 n n N4 C4 B6D sing 89 n n C10 N4 B6D sing 90 n n C10 O10 B6D doub 91 n n O5 C1 B6D sing 92 n n O3 HO3 B6D sing 93 n n H1 C1 B6D sing 94 n n H3 C3 B6D sing 95 n n HN2 N2 B6D sing 96 n n H5 C5 B6D sing 97 n n H83 C8 B6D sing 98 n n HN4 N4 B6D sing 99 n n H9 C9 B6D sing 100 n n H9B C9 B6D sing 101 n n H62 C6 B6D sing 102 n n H6A C6 B6D sing 103 n n O1 HO1 B6D sing 104 n n # _pdbx_chem_comp_identifier.comp_id B6D _pdbx_chem_comp_identifier.identifier b-D-6-deoxy-GlcpNAc4NAc _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 8P36 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 G3P A 1 201 162 G3P G3P . C 3 B6D A 1 202 163 B6D DAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 B6D . . . C 3 171.957 162.563 188.94 1 57.1 ? C1 B6D 202 A 1 HETATM 2 N N2 B6D . . . C 3 173.764 161.479 190.22 1 56.85 ? N2 B6D 202 A 1 HETATM 3 C C3 B6D . . . C 3 173.551 163.877 190.367 1 56.87 ? C3 B6D 202 A 1 HETATM 4 C C4 B6D . . . C 3 172.98 165.132 189.723 1 55.8 ? C4 B6D 202 A 1 HETATM 5 C C5 B6D . . . C 3 171.576 164.874 189.194 1 56.17 ? C5 B6D 202 A 1 HETATM 6 C C6 B6D . . . C 3 171.023 166.114 188.503 1 57.44 ? C6 B6D 202 A 1 HETATM 7 C C7 B6D . . . C 3 174.607 160.575 189.733 1 58.86 ? C7 B6D 202 A 1 HETATM 8 C C8 B6D . . . C 3 174.84 159.376 190.602 1 54.32 ? C8 B6D 202 A 1 HETATM 9 C C9 B6D . . . C 3 173.509 168.36 191.591 1 57.49 ? C9 B6D 202 A 1 HETATM 10 C C2 B6D . . . C 3 173.39 162.66 189.466 1 55.91 ? C2 B6D 202 A 1 HETATM 11 O O7 B6D . . . C 3 175.154 160.712 188.651 1 61.07 ? O7 B6D 202 A 1 HETATM 12 N N4 B6D . . . C 3 172.954 166.209 190.692 1 58.01 ? N4 B6D 202 A 1 HETATM 13 C C10 B6D . . . C 3 173.628 167.339 190.499 1 61.42 ? C10 B6D 202 A 1 HETATM 14 O O10 B6D . . . C 3 174.298 167.533 189.498 1 63.65 ? O10 B6D 202 A 1 HETATM 15 O O5 B6D . . . C 3 171.611 163.779 188.279 1 59.65 ? O5 B6D 202 A 1 HETATM 16 O O3 B6D . . . C 3 174.941 164.079 190.65 1 61.63 ? O3 B6D 202 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #