data_8P3B # _model_server_result.job_id veGESoL4INCXK1TZ8yyZng _model_server_result.datetime_utc '2024-12-21 16:41:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8p3b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 8P3B # _exptl.entry_id 8P3B _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 292.286 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2~{R})-~{N}-[(2~{R},3~{S},4~{S},5~{R},6~{R})-5-acetamido-2-methyl-4,6-bis(oxidanyl)oxan-3-yl]-2,3-bis(oxidanyl)propanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8P3B _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8P3B _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 120 A CYS 120 1_555 A SG CYS 152 A CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A OG SER 63 A SER 63 1_555 C C2 WKE . A WKE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale2 A CB SER 69 A SER 69 1_555 B O4P G3P . A G3P 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.399 ? # _chem_comp.formula 'C11 H20 N2 O7' _chem_comp.formula_weight 292.286 _chem_comp.id WKE _chem_comp.mon_nstd_flag . _chem_comp.name (2~{R})-~{N}-[(2~{R},3~{S},4~{S},5~{R},6~{R})-5-acetamido-2-methyl-4,6-bis(oxidanyl)oxan-3-yl]-2,3-bis(oxidanyl)propanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5 C10 WKE sing 392 n n O4 C9 WKE sing 393 n n C10 C9 WKE sing 394 n n C9 C8 WKE sing 395 n n N1 C8 WKE sing 396 n n N1 C7 WKE sing 397 n n C8 O3 WKE doub 398 n n C6 O6 WKE sing 399 n n C6 C7 WKE sing 400 n n C6 C3 WKE sing 401 n n O1 C4 WKE doub 402 n n N C4 WKE sing 403 n n N C3 WKE sing 404 n n C7 C1 WKE sing 405 n n C4 C5 WKE sing 406 n n C1 C WKE sing 407 n n C1 O WKE sing 408 n n C3 C2 WKE sing 409 n n C2 O WKE sing 410 n n C1 H1 WKE sing 411 n n C2 H2 WKE sing 412 n n C3 H4 WKE sing 413 n n C5 H5 WKE sing 414 n n C5 H6 WKE sing 415 n n C5 H7 WKE sing 416 n n C6 H8 WKE sing 417 n n C7 H9 WKE sing 418 n n C9 H10 WKE sing 419 n n C10 H11 WKE sing 420 n n C10 H12 WKE sing 421 n n N1 H13 WKE sing 422 n n O6 H14 WKE sing 423 n n O4 H15 WKE sing 424 n n O5 H16 WKE sing 425 n n N H17 WKE sing 426 n n C H18 WKE sing 427 n n C H19 WKE sing 428 n n C H20 WKE sing 429 n n C2 O2 WKE sing 430 n n O2 H3 WKE sing 431 n n # _atom_sites.entry_id 8P3B _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 G3P A 1 201 160 G3P G3P . C 3 WKE A 1 202 161 WKE GAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 WKE . . . C 3 196.432 166 171.938 1 60.74 ? C1 WKE 202 A 1 HETATM 2 C C2 WKE . . . C 3 198.185 167.549 171.971 1 67.15 ? C2 WKE 202 A 1 HETATM 3 C C3 WKE . . . C 3 199.278 166.489 171.961 1 60.77 ? C3 WKE 202 A 1 HETATM 4 C C4 WKE . . . C 3 201.693 166.845 171.811 1 67.66 ? C4 WKE 202 A 1 HETATM 5 C C5 WKE . . . C 3 201.806 166.082 173.099 1 62.87 ? C5 WKE 202 A 1 HETATM 6 C C6 WKE . . . C 3 198.754 165.268 171.216 1 61.62 ? C6 WKE 202 A 1 HETATM 7 C C7 WKE . . . C 3 197.383 164.827 171.719 1 59.93 ? C7 WKE 202 A 1 HETATM 8 C C8 WKE . . . C 3 196.496 162.664 171.048 1 70.35 ? C8 WKE 202 A 1 HETATM 9 C C9 WKE . . . C 3 195.841 161.866 169.962 1 69.7 ? C9 WKE 202 A 1 HETATM 10 C C10 WKE . . . C 3 194.507 162.505 169.598 1 67.98 ? C10 WKE 202 A 1 HETATM 11 N N1 WKE . . . C 3 196.8 163.923 170.75 1 64.2 ? N1 WKE 202 A 1 HETATM 12 O O1 WKE . . . C 3 202.673 167.316 171.258 1 66.42 ? O1 WKE 202 A 1 HETATM 13 O O6 WKE . . . C 3 199.682 164.188 171.368 1 68.55 ? O6 WKE 202 A 1 HETATM 14 O O3 WKE . . . C 3 196.727 162.163 172.136 1 70.78 ? O3 WKE 202 A 1 HETATM 15 O O4 WKE . . . C 3 196.688 161.848 168.808 1 65.44 ? O4 WKE 202 A 1 HETATM 16 O O5 WKE . . . C 3 193.881 161.744 168.559 1 68 ? O5 WKE 202 A 1 HETATM 17 N N WKE . . . C 3 200.471 166.98 171.299 1 66.31 ? N WKE 202 A 1 HETATM 18 C C WKE . . . C 3 195.177 165.545 172.674 1 63.34 ? C WKE 202 A 1 HETATM 19 O O WKE . . . C 3 197.071 167.029 172.691 1 67.41 ? O WKE 202 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 19 #