data_8P3D
#
_model_server_result.job_id            vkDCPJOBEuZY5TnK6kd0bQ 
_model_server_result.datetime_utc      '2024-11-14 19:26:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8p3d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":202}' 
#
_entry.id    8P3D 
#
_exptl.entry_id    8P3D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.53 
_cell.angle_gamma         90 
_cell.entry_id            8P3D 
_cell.length_a            46.858 
_cell.length_b            34.696 
_cell.length_c            53.081 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8P3D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O LEU 63 A LEU 67 1_555 F NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.786 ? 
metalc ? metalc2 A O LEU 96 A LEU 100 1_555 E NA NA . A NA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.9 ? 
metalc ? metalc3 A OD2 ASP 101 A ASP 105 1_555 E NA NA . A NA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? 
metalc ? metalc4 A O GLY 114 A GLY 118 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? 
metalc ? metalc5 A O PRO 123 A PRO 127 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? 
metalc ? metalc6 A O SER 126 A SER 130 1_555 D NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.776 ? 
metalc ? metalc7 A OE1 GLU 129 A GLU 133 1_555 F NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? 
metalc ? metalc8 E NA NA . A NA 204 1_555 G O HOH . A HOH 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? 
metalc ? metalc9 F NA NA . A NA 205 1_555 G O HOH . A HOH 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     8P3D 
_atom_sites.fract_transf_matrix[1][1]    0.021341 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001316 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.028822 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018875 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 WS5 A 1 201 201 WS5 LIG . 
C 3 NA A 1 202 1 NA NA . 
D 3 NA A 1 203 2 NA NA . 
E 3 NA A 1 204 3 NA NA . 
F 3 NA A 1 205 4 NA NA . 
G 4 HOH A 1 301 168 HOH HOH . 
G 4 HOH A 2 302 157 HOH HOH . 
G 4 HOH A 3 303 78 HOH HOH . 
G 4 HOH A 4 304 99 HOH HOH . 
G 4 HOH A 5 305 81 HOH HOH . 
G 4 HOH A 6 306 177 HOH HOH . 
G 4 HOH A 7 307 142 HOH HOH . 
G 4 HOH A 8 308 143 HOH HOH . 
G 4 HOH A 9 309 14 HOH HOH . 
G 4 HOH A 10 310 34 HOH HOH . 
G 4 HOH A 11 311 116 HOH HOH . 
G 4 HOH A 12 312 19 HOH HOH . 
G 4 HOH A 13 313 18 HOH HOH . 
G 4 HOH A 14 314 47 HOH HOH . 
G 4 HOH A 15 315 103 HOH HOH . 
G 4 HOH A 16 316 77 HOH HOH . 
G 4 HOH A 17 317 61 HOH HOH . 
G 4 HOH A 18 318 104 HOH HOH . 
G 4 HOH A 19 319 165 HOH HOH . 
G 4 HOH A 20 320 171 HOH HOH . 
G 4 HOH A 21 321 83 HOH HOH . 
G 4 HOH A 22 322 87 HOH HOH . 
G 4 HOH A 23 323 40 HOH HOH . 
G 4 HOH A 24 324 55 HOH HOH . 
G 4 HOH A 25 325 91 HOH HOH . 
G 4 HOH A 26 326 56 HOH HOH . 
G 4 HOH A 27 327 122 HOH HOH . 
G 4 HOH A 28 328 74 HOH HOH . 
G 4 HOH A 29 329 6 HOH HOH . 
G 4 HOH A 30 330 73 HOH HOH . 
G 4 HOH A 31 331 123 HOH HOH . 
G 4 HOH A 32 332 26 HOH HOH . 
G 4 HOH A 33 333 17 HOH HOH . 
G 4 HOH A 34 334 51 HOH HOH . 
G 4 HOH A 35 335 89 HOH HOH . 
G 4 HOH A 36 336 11 HOH HOH . 
G 4 HOH A 37 337 27 HOH HOH . 
G 4 HOH A 38 338 37 HOH HOH . 
G 4 HOH A 39 339 4 HOH HOH . 
G 4 HOH A 40 340 10 HOH HOH . 
G 4 HOH A 41 341 176 HOH HOH . 
G 4 HOH A 42 342 28 HOH HOH . 
G 4 HOH A 43 343 45 HOH HOH . 
G 4 HOH A 44 344 84 HOH HOH . 
G 4 HOH A 45 345 111 HOH HOH . 
G 4 HOH A 46 346 80 HOH HOH . 
G 4 HOH A 47 347 79 HOH HOH . 
G 4 HOH A 48 348 36 HOH HOH . 
G 4 HOH A 49 349 88 HOH HOH . 
G 4 HOH A 50 350 97 HOH HOH . 
G 4 HOH A 51 351 115 HOH HOH . 
G 4 HOH A 52 352 108 HOH HOH . 
G 4 HOH A 53 353 151 HOH HOH . 
G 4 HOH A 54 354 58 HOH HOH . 
G 4 HOH A 55 355 9 HOH HOH . 
G 4 HOH A 56 356 7 HOH HOH . 
G 4 HOH A 57 357 119 HOH HOH . 
G 4 HOH A 58 358 135 HOH HOH . 
G 4 HOH A 59 359 106 HOH HOH . 
G 4 HOH A 60 360 46 HOH HOH . 
G 4 HOH A 61 361 3 HOH HOH . 
G 4 HOH A 62 362 21 HOH HOH . 
G 4 HOH A 63 363 172 HOH HOH . 
G 4 HOH A 64 364 38 HOH HOH . 
G 4 HOH A 65 365 20 HOH HOH . 
G 4 HOH A 66 366 29 HOH HOH . 
G 4 HOH A 67 367 148 HOH HOH . 
G 4 HOH A 68 368 50 HOH HOH . 
G 4 HOH A 69 369 65 HOH HOH . 
G 4 HOH A 70 370 90 HOH HOH . 
G 4 HOH A 71 371 32 HOH HOH . 
G 4 HOH A 72 372 112 HOH HOH . 
G 4 HOH A 73 373 39 HOH HOH . 
G 4 HOH A 74 374 22 HOH HOH . 
G 4 HOH A 75 375 5 HOH HOH . 
G 4 HOH A 76 376 24 HOH HOH . 
G 4 HOH A 77 377 30 HOH HOH . 
G 4 HOH A 78 378 62 HOH HOH . 
G 4 HOH A 79 379 13 HOH HOH . 
G 4 HOH A 80 380 59 HOH HOH . 
G 4 HOH A 81 381 156 HOH HOH . 
G 4 HOH A 82 382 41 HOH HOH . 
G 4 HOH A 83 383 96 HOH HOH . 
G 4 HOH A 84 384 31 HOH HOH . 
G 4 HOH A 85 385 44 HOH HOH . 
G 4 HOH A 86 386 75 HOH HOH . 
G 4 HOH A 87 387 1 HOH HOH . 
G 4 HOH A 88 388 125 HOH HOH . 
G 4 HOH A 89 389 42 HOH HOH . 
G 4 HOH A 90 390 57 HOH HOH . 
G 4 HOH A 91 391 67 HOH HOH . 
G 4 HOH A 92 392 52 HOH HOH . 
G 4 HOH A 93 393 128 HOH HOH . 
G 4 HOH A 94 394 16 HOH HOH . 
G 4 HOH A 95 395 68 HOH HOH . 
G 4 HOH A 96 396 137 HOH HOH . 
G 4 HOH A 97 397 121 HOH HOH . 
G 4 HOH A 98 398 43 HOH HOH . 
G 4 HOH A 99 399 85 HOH HOH . 
G 4 HOH A 100 400 66 HOH HOH . 
G 4 HOH A 101 401 15 HOH HOH . 
G 4 HOH A 102 402 12 HOH HOH . 
G 4 HOH A 103 403 2 HOH HOH . 
G 4 HOH A 104 404 35 HOH HOH . 
G 4 HOH A 105 405 145 HOH HOH . 
G 4 HOH A 106 406 161 HOH HOH . 
G 4 HOH A 107 407 101 HOH HOH . 
G 4 HOH A 108 408 53 HOH HOH . 
G 4 HOH A 109 409 70 HOH HOH . 
G 4 HOH A 110 410 174 HOH HOH . 
G 4 HOH A 111 411 63 HOH HOH . 
G 4 HOH A 112 412 8 HOH HOH . 
G 4 HOH A 113 413 69 HOH HOH . 
G 4 HOH A 114 414 127 HOH HOH . 
G 4 HOH A 115 415 49 HOH HOH . 
G 4 HOH A 116 416 118 HOH HOH . 
G 4 HOH A 117 417 146 HOH HOH . 
G 4 HOH A 118 418 169 HOH HOH . 
G 4 HOH A 119 419 167 HOH HOH . 
G 4 HOH A 120 420 136 HOH HOH . 
G 4 HOH A 121 421 154 HOH HOH . 
G 4 HOH A 122 422 140 HOH HOH . 
G 4 HOH A 123 423 124 HOH HOH . 
G 4 HOH A 124 424 149 HOH HOH . 
G 4 HOH A 125 425 175 HOH HOH . 
G 4 HOH A 126 426 131 HOH HOH . 
G 4 HOH A 127 427 114 HOH HOH . 
G 4 HOH A 128 428 54 HOH HOH . 
G 4 HOH A 129 429 94 HOH HOH . 
G 4 HOH A 130 430 132 HOH HOH . 
G 4 HOH A 131 431 100 HOH HOH . 
G 4 HOH A 132 432 139 HOH HOH . 
G 4 HOH A 133 433 86 HOH HOH . 
G 4 HOH A 134 434 173 HOH HOH . 
G 4 HOH A 135 435 95 HOH HOH . 
G 4 HOH A 136 436 60 HOH HOH . 
G 4 HOH A 137 437 181 HOH HOH . 
G 4 HOH A 138 438 179 HOH HOH . 
G 4 HOH A 139 439 129 HOH HOH . 
G 4 HOH A 140 440 105 HOH HOH . 
G 4 HOH A 141 441 48 HOH HOH . 
G 4 HOH A 142 442 33 HOH HOH . 
G 4 HOH A 143 443 126 HOH HOH . 
G 4 HOH A 144 444 152 HOH HOH . 
G 4 HOH A 145 445 113 HOH HOH . 
G 4 HOH A 146 446 155 HOH HOH . 
G 4 HOH A 147 447 71 HOH HOH . 
G 4 HOH A 148 448 98 HOH HOH . 
G 4 HOH A 149 449 164 HOH HOH . 
G 4 HOH A 150 450 107 HOH HOH . 
G 4 HOH A 151 451 109 HOH HOH . 
G 4 HOH A 152 452 134 HOH HOH . 
G 4 HOH A 153 453 166 HOH HOH . 
G 4 HOH A 154 454 72 HOH HOH . 
G 4 HOH A 155 455 93 HOH HOH . 
G 4 HOH A 156 456 76 HOH HOH . 
G 4 HOH A 157 457 138 HOH HOH . 
G 4 HOH A 158 458 170 HOH HOH . 
G 4 HOH A 159 459 64 HOH HOH . 
G 4 HOH A 160 460 82 HOH HOH . 
G 4 HOH A 161 461 182 HOH HOH . 
G 4 HOH A 162 462 144 HOH HOH . 
G 4 HOH A 163 463 147 HOH HOH . 
G 4 HOH A 164 464 163 HOH HOH . 
G 4 HOH A 165 465 180 HOH HOH . 
G 4 HOH A 166 466 23 HOH HOH . 
G 4 HOH A 167 467 159 HOH HOH . 
G 4 HOH A 168 468 150 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               6.975 
_atom_site.Cartn_y               -11.733 
_atom_site.Cartn_z               6.016 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        26.17 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           202 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#