data_8P3H
#
_model_server_result.job_id            RyDJWYjEEFj3UUYRanKWZw 
_model_server_result.datetime_utc      '2024-12-01 04:46:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8p3h 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":202}' 
#
_entry.id    8P3H 
#
_exptl.entry_id    8P3H 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8P3H 
_cell.length_a            60.172 
_cell.length_b            77.696 
_cell.length_c            116.15 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8P3H 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 161 A CYS 105 1_555 G C08 WTO . A WTO 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.83 ? 
covale ? covale2 B SG CYS 161 B CYS 102 1_555 K C08 WTO . B WTO 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.828 ? 
metalc ? metalc1 A OG1 THR 61 A THR 9 1_555 H MG MG . A MG 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? 
metalc ? metalc2 A OG1 THR 79 A THR 27 1_555 H MG MG . A MG 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.904 ? 
metalc ? metalc3 C O3G GNP . A GNP 201 1_555 H MG MG . A MG 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? 
metalc ? metalc4 C O1B GNP . A GNP 201 1_555 H MG MG . A MG 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? 
metalc ? metalc5 H MG MG . A MG 206 1_555 M O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.839 ? 
metalc ? metalc6 H MG MG . A MG 206 1_555 M O HOH . A HOH 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
metalc ? metalc7 B OG1 THR 61 B THR 9 1_555 L MG MG . B MG 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
metalc ? metalc8 B OG1 THR 79 B THR 27 1_555 L MG MG . B MG 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? 
metalc ? metalc9 I O2G GNP . B GNP 201 1_555 L MG MG . B MG 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.762 ? 
metalc ? metalc10 I O1B GNP . B GNP 201 1_555 L MG MG . B MG 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? 
metalc ? metalc11 L MG MG . B MG 204 1_555 N O HOH . B HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc12 L MG MG . B MG 204 1_555 N O HOH . B HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 180 n n 
C1 C2 GOL sing 181 n n 
C1 H11 GOL sing 182 n n 
C1 H12 GOL sing 183 n n 
O1 HO1 GOL sing 184 n n 
C2 O2 GOL sing 185 n n 
C2 C3 GOL sing 186 n n 
C2 H2 GOL sing 187 n n 
O2 HO2 GOL sing 188 n n 
C3 O3 GOL sing 189 n n 
C3 H31 GOL sing 190 n n 
C3 H32 GOL sing 191 n n 
O3 HO3 GOL sing 192 n n 
#
_atom_sites.entry_id                     8P3H 
_atom_sites.fract_transf_matrix[1][1]    0.016619 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012871 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00861 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GNP A 1 201 201 GNP GNP . 
D 3 GOL A 1 202 301 GOL GOL . 
E 3 GOL A 1 203 401 GOL GOL . 
F 3 GOL A 1 204 501 GOL GOL . 
G 4 WTO A 1 205 123 WTO CC4 . 
H 5 MG A 1 206 4 MG MG . 
I 2 GNP B 1 201 201 GNP GNP . 
J 3 GOL B 1 202 301 GOL GOL . 
K 4 WTO B 1 203 123 WTO CC4 . 
L 5 MG B 1 204 3 MG MG . 
M 6 HOH A 1 301 5 HOH HOH . 
M 6 HOH A 2 302 25 HOH HOH . 
M 6 HOH A 3 303 31 HOH HOH . 
M 6 HOH A 4 304 60 HOH HOH . 
M 6 HOH A 5 305 3 HOH HOH . 
M 6 HOH A 6 306 13 HOH HOH . 
M 6 HOH A 7 307 26 HOH HOH . 
M 6 HOH A 8 308 4 HOH HOH . 
M 6 HOH A 9 309 16 HOH HOH . 
M 6 HOH A 10 310 8 HOH HOH . 
M 6 HOH A 11 311 27 HOH HOH . 
M 6 HOH A 12 312 39 HOH HOH . 
M 6 HOH A 13 313 59 HOH HOH . 
M 6 HOH A 14 314 58 HOH HOH . 
M 6 HOH A 15 315 17 HOH HOH . 
M 6 HOH A 16 316 18 HOH HOH . 
M 6 HOH A 17 317 9 HOH HOH . 
M 6 HOH A 18 318 56 HOH HOH . 
M 6 HOH A 19 319 10 HOH HOH . 
M 6 HOH A 20 320 32 HOH HOH . 
M 6 HOH A 21 321 50 HOH HOH . 
M 6 HOH A 22 322 52 HOH HOH . 
M 6 HOH A 23 323 51 HOH HOH . 
N 6 HOH B 1 301 42 HOH HOH . 
N 6 HOH B 2 302 54 HOH HOH . 
N 6 HOH B 3 303 35 HOH HOH . 
N 6 HOH B 4 304 36 HOH HOH . 
N 6 HOH B 5 305 47 HOH HOH . 
N 6 HOH B 6 306 24 HOH HOH . 
N 6 HOH B 7 307 57 HOH HOH . 
N 6 HOH B 8 308 61 HOH HOH . 
N 6 HOH B 9 309 46 HOH HOH . 
N 6 HOH B 10 310 41 HOH HOH . 
N 6 HOH B 11 311 55 HOH HOH . 
N 6 HOH B 12 312 48 HOH HOH . 
N 6 HOH B 13 313 2 HOH HOH . 
N 6 HOH B 14 314 11 HOH HOH . 
N 6 HOH B 15 315 7 HOH HOH . 
N 6 HOH B 16 316 62 HOH HOH . 
N 6 HOH B 17 317 40 HOH HOH . 
N 6 HOH B 18 318 45 HOH HOH . 
N 6 HOH B 19 319 44 HOH HOH . 
N 6 HOH B 20 320 43 HOH HOH . 
N 6 HOH B 21 321 6 HOH HOH . 
N 6 HOH B 22 322 23 HOH HOH . 
N 6 HOH B 23 323 49 HOH HOH . 
N 6 HOH B 24 324 37 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . J 3 22.373 3.584 31.956 1 53.12 ? C1 GOL 202 B 1 
HETATM 2 O O1 GOL . . . J 3 22.226 2.894 30.759 1 48.01 ? O1 GOL 202 B 1 
HETATM 3 C C2 GOL . . . J 3 21.28 3.022 32.913 1 58.64 ? C2 GOL 202 B 1 
HETATM 4 O O2 GOL . . . J 3 21.314 1.619 32.997 1 61.61 ? O2 GOL 202 B 1 
HETATM 5 C C3 GOL . . . J 3 19.949 3.573 32.331 1 53.67 ? C3 GOL 202 B 1 
HETATM 6 O O3 GOL . . . J 3 18.915 2.796 32.844 1 55.27 ? O3 GOL 202 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#