data_8P3I
#
_model_server_result.job_id            Y0EMFh6wyMJYSqdT26un5g 
_model_server_result.datetime_utc      '2024-11-22 00:40:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8p3i 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":201}' 
#
_entry.id    8P3I 
#
_exptl.entry_id    8P3I 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              522.196 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8P3I 
_cell.length_a            61.367 
_cell.length_b            76.601 
_cell.length_c            118.674 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8P3I 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 161 A CYS 110 1_555 J C05 WTK . A WTK 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.904 ? 
covale ? covale2 B SG CYS 161 B CYS 109 1_555 S C05 WTK . B WTK 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.905 ? 
metalc ? metalc1 A OG1 THR 61 A THR 10 1_555 K MG MG . A MG 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? 
metalc ? metalc2 A OG1 THR 79 A THR 28 1_555 K MG MG . A MG 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? 
metalc ? metalc3 C O3G GNP . A GNP 201 1_555 K MG MG . A MG 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
metalc ? metalc4 C O1B GNP . A GNP 201 1_555 K MG MG . A MG 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? 
metalc ? metalc5 K MG MG . A MG 209 1_555 U O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? 
metalc ? metalc6 K MG MG . A MG 209 1_555 U O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? 
metalc ? metalc7 B OG1 THR 61 B THR 9 1_555 T MG MG . B MG 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? 
metalc ? metalc8 B OG1 THR 79 B THR 27 1_555 T MG MG . B MG 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? 
metalc ? metalc9 L O3G GNP . B GNP 201 1_555 T MG MG . B MG 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.871 ? 
metalc ? metalc10 L O1B GNP . B GNP 201 1_555 T MG MG . B MG 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.926 ? 
metalc ? metalc11 T MG MG . B MG 209 1_555 V O HOH . B HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
metalc ? metalc12 T MG MG . B MG 209 1_555 V O HOH . B HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? 
#
_chem_comp.formula           'C10 H17 N6 O13 P3' 
_chem_comp.formula_weight    522.196 
_chem_comp.id                GNP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GNP doub 129 n n 
PG O2G GNP sing 130 n n 
PG O3G GNP sing 131 n n 
PG N3B GNP sing 132 n n 
O2G HOG2 GNP sing 133 n n 
O3G HOG3 GNP sing 134 n n 
N3B PB GNP sing 135 n n 
N3B HNB3 GNP sing 136 n n 
PB O1B GNP doub 137 n n 
PB O2B GNP sing 138 n n 
PB O3A GNP sing 139 n n 
O2B HOB2 GNP sing 140 n n 
O3A PA GNP sing 141 n n 
PA O1A GNP doub 142 n n 
PA O2A GNP sing 143 n n 
PA O5' GNP sing 144 n n 
O2A HOA2 GNP sing 145 n n 
O5' C5' GNP sing 146 n n 
C5' C4' GNP sing 147 n n 
C5' "H5'2" GNP sing 148 n n 
C5' "H5'1" GNP sing 149 n n 
C4' O4' GNP sing 150 n n 
C4' C3' GNP sing 151 n n 
C4' H4' GNP sing 152 n n 
O4' C1' GNP sing 153 n n 
C3' O3' GNP sing 154 n n 
C3' C2' GNP sing 155 n n 
C3' H3' GNP sing 156 n n 
O3' HO3' GNP sing 157 n n 
C2' O2' GNP sing 158 n n 
C2' C1' GNP sing 159 n n 
C2' H2' GNP sing 160 n n 
O2' HO2' GNP sing 161 n n 
C1' N9 GNP sing 162 n n 
C1' H1' GNP sing 163 n n 
N9 C8 GNP sing 164 n y 
N9 C4 GNP sing 165 n y 
C8 N7 GNP doub 166 n y 
C8 H8 GNP sing 167 n n 
N7 C5 GNP sing 168 n y 
C5 C6 GNP sing 169 n y 
C5 C4 GNP doub 170 n y 
C6 O6 GNP doub 171 n n 
C6 N1 GNP sing 172 n y 
N1 C2 GNP sing 173 n y 
N1 HN1 GNP sing 174 n n 
C2 N2 GNP sing 175 n n 
C2 N3 GNP doub 176 n y 
N2 HN21 GNP sing 177 n n 
N2 HN22 GNP sing 178 n n 
N3 C4 GNP sing 179 n y 
#
_atom_sites.entry_id                     8P3I 
_atom_sites.fract_transf_matrix[1][1]    0.016295 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013055 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008426 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GNP A 1 201 201 GNP GNP . 
D 3 GOL A 1 202 301 GOL GOL . 
E 3 GOL A 1 203 401 GOL GOL . 
F 3 GOL A 1 204 501 GOL GOL . 
G 3 GOL A 1 205 601 GOL GOL . 
H 3 GOL A 1 206 701 GOL GOL . 
I 3 GOL A 1 207 801 GOL GOL . 
J 4 WTK A 1 208 123 WTK C13 . 
K 5 MG A 1 209 3 MG MG . 
L 2 GNP B 1 201 201 GNP GNP . 
M 3 GOL B 1 202 301 GOL GOL . 
N 3 GOL B 1 203 401 GOL GOL . 
O 3 GOL B 1 204 501 GOL GOL . 
P 3 GOL B 1 205 601 GOL GOL . 
Q 3 GOL B 1 206 701 GOL GOL . 
R 3 GOL B 1 207 801 GOL GOL . 
S 4 WTK B 1 208 123 WTK C13 . 
T 5 MG B 1 209 4 MG MG . 
U 6 HOH A 1 301 59 HOH HOH . 
U 6 HOH A 2 302 2 HOH HOH . 
U 6 HOH A 3 303 12 HOH HOH . 
U 6 HOH A 4 304 1 HOH HOH . 
U 6 HOH A 5 305 30 HOH HOH . 
U 6 HOH A 6 306 32 HOH HOH . 
U 6 HOH A 7 307 33 HOH HOH . 
U 6 HOH A 8 308 11 HOH HOH . 
U 6 HOH A 9 309 7 HOH HOH . 
U 6 HOH A 10 310 5 HOH HOH . 
U 6 HOH A 11 311 14 HOH HOH . 
U 6 HOH A 12 312 13 HOH HOH . 
U 6 HOH A 13 313 55 HOH HOH . 
U 6 HOH A 14 314 56 HOH HOH . 
U 6 HOH A 15 315 48 HOH HOH . 
U 6 HOH A 16 316 31 HOH HOH . 
U 6 HOH A 17 317 60 HOH HOH . 
U 6 HOH A 18 318 17 HOH HOH . 
U 6 HOH A 19 319 6 HOH HOH . 
U 6 HOH A 20 320 58 HOH HOH . 
U 6 HOH A 21 321 16 HOH HOH . 
U 6 HOH A 22 322 38 HOH HOH . 
U 6 HOH A 23 323 49 HOH HOH . 
U 6 HOH A 24 324 15 HOH HOH . 
U 6 HOH A 25 325 8 HOH HOH . 
U 6 HOH A 26 326 9 HOH HOH . 
U 6 HOH A 27 327 10 HOH HOH . 
U 6 HOH A 28 328 22 HOH HOH . 
V 6 HOH B 1 301 47 HOH HOH . 
V 6 HOH B 2 302 50 HOH HOH . 
V 6 HOH B 3 303 46 HOH HOH . 
V 6 HOH B 4 304 3 HOH HOH . 
V 6 HOH B 5 305 54 HOH HOH . 
V 6 HOH B 6 306 35 HOH HOH . 
V 6 HOH B 7 307 4 HOH HOH . 
V 6 HOH B 8 308 23 HOH HOH . 
V 6 HOH B 9 309 41 HOH HOH . 
V 6 HOH B 10 310 36 HOH HOH . 
V 6 HOH B 11 311 43 HOH HOH . 
V 6 HOH B 12 312 42 HOH HOH . 
V 6 HOH B 13 313 52 HOH HOH . 
V 6 HOH B 14 314 53 HOH HOH . 
V 6 HOH B 15 315 27 HOH HOH . 
V 6 HOH B 16 316 19 HOH HOH . 
V 6 HOH B 17 317 21 HOH HOH . 
V 6 HOH B 18 318 45 HOH HOH . 
V 6 HOH B 19 319 44 HOH HOH . 
V 6 HOH B 20 320 20 HOH HOH . 
V 6 HOH B 21 321 40 HOH HOH . 
V 6 HOH B 22 322 57 HOH HOH . 
V 6 HOH B 23 323 34 HOH HOH . 
V 6 HOH B 24 324 18 HOH HOH . 
V 6 HOH B 25 325 29 HOH HOH . 
V 6 HOH B 26 326 37 HOH HOH . 
V 6 HOH B 27 327 28 HOH HOH . 
V 6 HOH B 28 328 39 HOH HOH . 
V 6 HOH B 29 329 51 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GNP . . . L 2 22.534 5.476 24.327 1 46.44 ? PG GNP 201 B 1 
HETATM 2 O O1G GNP . . . L 2 23.704 4.58 24.039 1 41.56 ? O1G GNP 201 B 1 
HETATM 3 O O2G GNP . . . L 2 22.104 6.32 23.136 1 46.9 ? O2G GNP 201 B 1 
HETATM 4 O O3G GNP . . . L 2 21.286 4.691 24.835 1 46.37 ? O3G GNP 201 B 1 
HETATM 5 N N3B GNP . . . L 2 23.105 6.502 25.556 1 48.61 ? N3B GNP 201 B 1 
HETATM 6 P PB GNP . . . L 2 22.13 7.395 26.5 1 42.42 ? PB GNP 201 B 1 
HETATM 7 O O1B GNP . . . L 2 20.717 6.858 26.518 1 39.07 ? O1B GNP 201 B 1 
HETATM 8 O O2B GNP . . . L 2 22.133 8.855 26.12 1 43.76 ? O2B GNP 201 B 1 
HETATM 9 O O3A GNP . . . L 2 22.873 7.383 27.97 1 53.23 ? O3A GNP 201 B 1 
HETATM 10 P PA GNP . . . L 2 22.359 6.855 29.376 1 41.31 ? PA GNP 201 B 1 
HETATM 11 O O1A GNP . . . L 2 22.545 5.338 29.414 1 43.22 ? O1A GNP 201 B 1 
HETATM 12 O O2A GNP . . . L 2 21.001 7.416 29.667 1 40.69 ? O2A GNP 201 B 1 
HETATM 13 O O5' GNP . . . L 2 23.545 7.399 30.236 1 46.79 ? O5' GNP 201 B 1 
HETATM 14 C C5' GNP . . . L 2 24.909 7.053 29.922 1 45.67 ? C5' GNP 201 B 1 
HETATM 15 C C4' GNP . . . L 2 25.74 7.049 31.188 1 44.99 ? C4' GNP 201 B 1 
HETATM 16 O O4' GNP . . . L 2 25.758 8.369 31.77 1 48.7 ? O4' GNP 201 B 1 
HETATM 17 C C3' GNP . . . L 2 25.281 6.115 32.302 1 44.53 ? C3' GNP 201 B 1 
HETATM 18 O O3' GNP . . . L 2 26.423 5.704 33.039 1 47.33 ? O3' GNP 201 B 1 
HETATM 19 C C2' GNP . . . L 2 24.427 7.026 33.176 1 44.63 ? C2' GNP 201 B 1 
HETATM 20 O O2' GNP . . . L 2 24.483 6.539 34.51 1 49.53 ? O2' GNP 201 B 1 
HETATM 21 C C1' GNP . . . L 2 25.211 8.332 33.078 1 46.29 ? C1' GNP 201 B 1 
HETATM 22 N N9 GNP . . . L 2 24.4 9.543 33.255 1 42.28 ? N9 GNP 201 B 1 
HETATM 23 C C8 GNP . . . L 2 23.299 9.897 32.52 1 44.88 ? C8 GNP 201 B 1 
HETATM 24 N N7 GNP . . . L 2 22.797 11.06 32.876 1 49.02 ? N7 GNP 201 B 1 
HETATM 25 C C5 GNP . . . L 2 23.63 11.491 33.912 1 46.57 ? C5 GNP 201 B 1 
HETATM 26 C C6 GNP . . . L 2 23.611 12.693 34.715 1 46.38 ? C6 GNP 201 B 1 
HETATM 27 O O6 GNP . . . L 2 22.804 13.634 34.651 1 44.1 ? O6 GNP 201 B 1 
HETATM 28 N N1 GNP . . . L 2 24.645 12.723 35.631 1 45.02 ? N1 GNP 201 B 1 
HETATM 29 C C2 GNP . . . L 2 25.586 11.742 35.777 1 48.48 ? C2 GNP 201 B 1 
HETATM 30 N N2 GNP . . . L 2 26.517 11.931 36.713 1 52.8 ? N2 GNP 201 B 1 
HETATM 31 N N3 GNP . . . L 2 25.62 10.636 35.036 1 50.07 ? N3 GNP 201 B 1 
HETATM 32 C C4 GNP . . . L 2 24.625 10.575 34.132 1 42.58 ? C4 GNP 201 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           32 
#