data_8P3K # _model_server_result.job_id iwVTmGu9hhB1oXb9jaGvIA _model_server_result.datetime_utc '2024-11-21 09:05:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8p3k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 8P3K # _exptl.entry_id 8P3K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 429.489 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2~{S})-~{N}-(3-methoxyphenyl)-1-[4-(prop-2-enoylamino)phenyl]sulfonyl-pyrrolidine-2-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8P3K _cell.length_a 60.896 _cell.length_b 76.536 _cell.length_c 117.795 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8P3K _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 61 A THR 23 1_555 I MG MG . A MG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc2 A OG1 THR 79 A THR 41 1_555 I MG MG . A MG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc3 C O2G GNP . A GNP 301 1_555 I MG MG . A MG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc4 C O1B GNP . A GNP 301 1_555 I MG MG . A MG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.82 ? metalc ? metalc5 I MG MG . A MG 307 1_555 S O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc6 I MG MG . A MG 307 1_555 S O HOH . A HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? metalc ? metalc7 B OG1 THR 61 B THR 23 1_555 R MG MG . B MG 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc8 B OG1 THR 79 B THR 41 1_555 R MG MG . B MG 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? metalc ? metalc9 K O3G GNP . B GNP 202 1_555 R MG MG . B MG 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? metalc ? metalc10 K O1B GNP . B GNP 202 1_555 R MG MG . B MG 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc11 R MG MG . B MG 209 1_555 T O HOH . B HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? metalc ? metalc12 R MG MG . B MG 209 1_555 T O HOH . B HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? # _chem_comp.formula 'C21 H23 N3 O5 S' _chem_comp.formula_weight 429.489 _chem_comp.id WTB _chem_comp.mon_nstd_flag . _chem_comp.name (2~{S})-~{N}-(3-methoxyphenyl)-1-[4-(prop-2-enoylamino)phenyl]sulfonyl-pyrrolidine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C28 C27 WTB doub 440 n y C28 C21 WTB sing 441 n y C27 C26 WTB sing 442 n y C12 C11 WTB doub 443 n n N20 C21 WTB sing 444 n n N20 C19 WTB sing 445 n n C21 C22 WTB doub 446 n y C11 C10 WTB sing 447 n n C26 C23 WTB doub 448 n y O29 C19 WTB doub 449 n n C19 C15 WTB sing 450 n n C22 C23 WTB sing 451 n y C23 O24 WTB sing 452 n n C25 O24 WTB sing 453 n n O13 C10 WTB doub 454 n n C10 N09 WTB sing 455 n n C15 C16 WTB sing 456 n n C15 N14 WTB sing 457 n n O30 S02 WTB doub 458 n n C16 C17 WTB sing 459 n n C07 C08 WTB doub 460 n y C07 C06 WTB sing 461 n y C08 C03 WTB sing 462 n y N09 C06 WTB sing 463 n n C06 C05 WTB doub 464 n y N14 S02 WTB sing 465 n n N14 C18 WTB sing 466 n n C03 S02 WTB sing 467 n n C03 C04 WTB doub 468 n y S02 O01 WTB doub 469 n n C05 C04 WTB sing 470 n y C17 C18 WTB sing 471 n n C11 H1 WTB sing 472 n n C12 H2 WTB sing 473 n n C12 H3 WTB sing 474 n n C15 H4 WTB sing 475 n n C16 H5 WTB sing 476 n n C16 H6 WTB sing 477 n n C17 H7 WTB sing 478 n n C17 H8 WTB sing 479 n n C18 H9 WTB sing 480 n n C18 H10 WTB sing 481 n n C22 H11 WTB sing 482 n n C04 H12 WTB sing 483 n n C05 H13 WTB sing 484 n n C07 H14 WTB sing 485 n n C08 H15 WTB sing 486 n n C25 H16 WTB sing 487 n n C25 H17 WTB sing 488 n n C25 H18 WTB sing 489 n n C26 H19 WTB sing 490 n n C27 H20 WTB sing 491 n n C28 H21 WTB sing 492 n n N09 H22 WTB sing 493 n n N20 H23 WTB sing 494 n n # _atom_sites.entry_id 8P3K _atom_sites.fract_transf_matrix[1][1] 0.016422 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013066 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008489 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GNP A 1 301 301 GNP GNP . D 3 WTB A 1 302 401 WTB C58 . E 4 GOL A 1 303 501 GOL GOL . F 4 GOL A 1 304 601 GOL GOL . G 4 GOL A 1 305 701 GOL GOL . H 4 GOL A 1 306 801 GOL GOL . I 5 MG A 1 307 4 MG MG . J 3 WTB B 1 201 201 WTB C58 . K 2 GNP B 1 202 301 GNP GNP . L 4 GOL B 1 203 401 GOL GOL . M 4 GOL B 1 204 501 GOL GOL . N 4 GOL B 1 205 601 GOL GOL . O 4 GOL B 1 206 701 GOL GOL . P 4 GOL B 1 207 801 GOL GOL . Q 4 GOL B 1 208 901 GOL GOL . R 5 MG B 1 209 3 MG MG . S 6 HOH A 1 401 30 HOH HOH . S 6 HOH A 2 402 4 HOH HOH . S 6 HOH A 3 403 5 HOH HOH . S 6 HOH A 4 404 26 HOH HOH . S 6 HOH A 5 405 41 HOH HOH . S 6 HOH A 6 406 34 HOH HOH . S 6 HOH A 7 407 42 HOH HOH . S 6 HOH A 8 408 35 HOH HOH . S 6 HOH A 9 409 24 HOH HOH . S 6 HOH A 10 410 17 HOH HOH . S 6 HOH A 11 411 43 HOH HOH . S 6 HOH A 12 412 25 HOH HOH . S 6 HOH A 13 413 44 HOH HOH . S 6 HOH A 14 414 36 HOH HOH . S 6 HOH A 15 415 10 HOH HOH . S 6 HOH A 16 416 37 HOH HOH . S 6 HOH A 17 417 9 HOH HOH . S 6 HOH A 18 418 12 HOH HOH . S 6 HOH A 19 419 13 HOH HOH . S 6 HOH A 20 420 40 HOH HOH . S 6 HOH A 21 421 27 HOH HOH . S 6 HOH A 22 422 29 HOH HOH . S 6 HOH A 23 423 21 HOH HOH . S 6 HOH A 24 424 28 HOH HOH . S 6 HOH A 25 425 11 HOH HOH . T 6 HOH B 1 301 32 HOH HOH . T 6 HOH B 2 302 3 HOH HOH . T 6 HOH B 3 303 2 HOH HOH . T 6 HOH B 4 304 33 HOH HOH . T 6 HOH B 5 305 31 HOH HOH . T 6 HOH B 6 306 38 HOH HOH . T 6 HOH B 7 307 14 HOH HOH . T 6 HOH B 8 308 39 HOH HOH . T 6 HOH B 9 309 23 HOH HOH . T 6 HOH B 10 310 19 HOH HOH . T 6 HOH B 11 311 16 HOH HOH . T 6 HOH B 12 312 18 HOH HOH . T 6 HOH B 13 313 15 HOH HOH . T 6 HOH B 14 314 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 WTB . . . D 3 -8.053 -7.613 4.295 0.85 52.61 ? C10 WTB 302 A 1 HETATM 2 C C11 WTB . . . D 3 -8.913 -7.678 3.029 0.85 51.17 ? C11 WTB 302 A 1 HETATM 3 C C12 WTB . . . D 3 -9.574 -6.642 2.624 0.85 53.37 ? C12 WTB 302 A 1 HETATM 4 C C15 WTB . . . D 3 -15.308 -7.659 4.652 0.85 84.26 ? C15 WTB 302 A 1 HETATM 5 C C16 WTB . . . D 3 -15.4 -8.783 5.317 0.85 82.35 ? C16 WTB 302 A 1 HETATM 6 C C17 WTB . . . D 3 -16.293 -8.465 6.542 0.85 87.7 ? C17 WTB 302 A 1 HETATM 7 C C18 WTB . . . D 3 -16.217 -6.915 6.703 0.85 93.19 ? C18 WTB 302 A 1 HETATM 8 C C19 WTB . . . D 3 -16.426 -7.422 3.573 0.85 81.21 ? C19 WTB 302 A 1 HETATM 9 C C21 WTB . . . D 3 -16.888 -9.934 2.875 0.85 71.64 ? C21 WTB 302 A 1 HETATM 10 C C22 WTB . . . D 3 -17.782 -10.728 3.613 0.85 66.41 ? C22 WTB 302 A 1 HETATM 11 C C23 WTB . . . D 3 -17.571 -12.107 3.722 0.85 67.33 ? C23 WTB 302 A 1 HETATM 12 C C03 WTB . . . D 3 -12.495 -5.618 5.968 0.85 83.12 ? C03 WTB 302 A 1 HETATM 13 C C04 WTB . . . D 3 -11.409 -4.744 6.343 0.85 70.39 ? C04 WTB 302 A 1 HETATM 14 C C05 WTB . . . D 3 -10.109 -5.218 6.226 0.85 65.96 ? C05 WTB 302 A 1 HETATM 15 C C06 WTB . . . D 3 -9.87 -6.527 5.751 0.85 64.17 ? C06 WTB 302 A 1 HETATM 16 C C07 WTB . . . D 3 -10.924 -7.348 5.407 0.85 67.2 ? C07 WTB 302 A 1 HETATM 17 C C08 WTB . . . D 3 -12.244 -6.859 5.513 0.85 81.05 ? C08 WTB 302 A 1 HETATM 18 C C25 WTB . . . D 3 -19.885 -12.905 4.029 0.85 37.42 ? C25 WTB 302 A 1 HETATM 19 C C26 WTB . . . D 3 -16.468 -12.692 3.102 0.85 64.69 ? C26 WTB 302 A 1 HETATM 20 C C27 WTB . . . D 3 -15.58 -11.905 2.38 0.85 64.99 ? C27 WTB 302 A 1 HETATM 21 C C28 WTB . . . D 3 -15.798 -10.515 2.271 0.85 72.29 ? C28 WTB 302 A 1 HETATM 22 N N09 WTB . . . D 3 -8.531 -7.062 5.601 0.85 63.46 ? N09 WTB 302 A 1 HETATM 23 N N14 WTB . . . D 3 -15.321 -6.516 5.842 0.85 95.36 ? N14 WTB 302 A 1 HETATM 24 N N20 WTB . . . D 3 -17.117 -8.496 2.774 0.85 73.08 ? N20 WTB 302 A 1 HETATM 25 O O01 WTB . . . D 3 -14.561 -4.367 7.242 0.85 95.3 ? O01 WTB 302 A 1 HETATM 26 O O13 WTB . . . D 3 -6.9 -8.056 4.206 0.85 48.68 ? O13 WTB 302 A 1 HETATM 27 O O24 WTB . . . D 3 -18.508 -12.936 4.48 0.85 54.37 ? O24 WTB 302 A 1 HETATM 28 O O29 WTB . . . D 3 -16.739 -6.283 3.349 0.85 80.35 ? O29 WTB 302 A 1 HETATM 29 O O30 WTB . . . D 3 -14.56 -4.147 4.995 0.85 94.83 ? O30 WTB 302 A 1 HETATM 30 S S02 WTB . . . D 3 -14.278 -5.115 6.041 0.85 106.52 ? S02 WTB 302 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 30 #