data_8P3K
#
_model_server_result.job_id            srq4j_Oen8dUwNzMntEa5g 
_model_server_result.datetime_utc      '2024-11-21 08:35:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8p3k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":304}' 
#
_entry.id    8P3K 
#
_exptl.entry_id    8P3K 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8P3K 
_cell.length_a            60.896 
_cell.length_b            76.536 
_cell.length_c            117.795 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8P3K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 L N N 
? 4 M N N 
? 4 N N N 
? 4 O N N 
? 4 P N N 
? 4 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 61 A THR 23 1_555 I MG MG . A MG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? 
metalc ? metalc2 A OG1 THR 79 A THR 41 1_555 I MG MG . A MG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc3 C O2G GNP . A GNP 301 1_555 I MG MG . A MG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? 
metalc ? metalc4 C O1B GNP . A GNP 301 1_555 I MG MG . A MG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.82 ? 
metalc ? metalc5 I MG MG . A MG 307 1_555 S O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? 
metalc ? metalc6 I MG MG . A MG 307 1_555 S O HOH . A HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? 
metalc ? metalc7 B OG1 THR 61 B THR 23 1_555 R MG MG . B MG 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? 
metalc ? metalc8 B OG1 THR 79 B THR 41 1_555 R MG MG . B MG 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? 
metalc ? metalc9 K O3G GNP . B GNP 202 1_555 R MG MG . B MG 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? 
metalc ? metalc10 K O1B GNP . B GNP 202 1_555 R MG MG . B MG 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
metalc ? metalc11 R MG MG . B MG 209 1_555 T O HOH . B HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? 
metalc ? metalc12 R MG MG . B MG 209 1_555 T O HOH . B HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 180 n n 
C1 C2 GOL sing 181 n n 
C1 H11 GOL sing 182 n n 
C1 H12 GOL sing 183 n n 
O1 HO1 GOL sing 184 n n 
C2 O2 GOL sing 185 n n 
C2 C3 GOL sing 186 n n 
C2 H2 GOL sing 187 n n 
O2 HO2 GOL sing 188 n n 
C3 O3 GOL sing 189 n n 
C3 H31 GOL sing 190 n n 
C3 H32 GOL sing 191 n n 
O3 HO3 GOL sing 192 n n 
#
_atom_sites.entry_id                     8P3K 
_atom_sites.fract_transf_matrix[1][1]    0.016422 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013066 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008489 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GNP A 1 301 301 GNP GNP . 
D 3 WTB A 1 302 401 WTB C58 . 
E 4 GOL A 1 303 501 GOL GOL . 
F 4 GOL A 1 304 601 GOL GOL . 
G 4 GOL A 1 305 701 GOL GOL . 
H 4 GOL A 1 306 801 GOL GOL . 
I 5 MG A 1 307 4 MG MG . 
J 3 WTB B 1 201 201 WTB C58 . 
K 2 GNP B 1 202 301 GNP GNP . 
L 4 GOL B 1 203 401 GOL GOL . 
M 4 GOL B 1 204 501 GOL GOL . 
N 4 GOL B 1 205 601 GOL GOL . 
O 4 GOL B 1 206 701 GOL GOL . 
P 4 GOL B 1 207 801 GOL GOL . 
Q 4 GOL B 1 208 901 GOL GOL . 
R 5 MG B 1 209 3 MG MG . 
S 6 HOH A 1 401 30 HOH HOH . 
S 6 HOH A 2 402 4 HOH HOH . 
S 6 HOH A 3 403 5 HOH HOH . 
S 6 HOH A 4 404 26 HOH HOH . 
S 6 HOH A 5 405 41 HOH HOH . 
S 6 HOH A 6 406 34 HOH HOH . 
S 6 HOH A 7 407 42 HOH HOH . 
S 6 HOH A 8 408 35 HOH HOH . 
S 6 HOH A 9 409 24 HOH HOH . 
S 6 HOH A 10 410 17 HOH HOH . 
S 6 HOH A 11 411 43 HOH HOH . 
S 6 HOH A 12 412 25 HOH HOH . 
S 6 HOH A 13 413 44 HOH HOH . 
S 6 HOH A 14 414 36 HOH HOH . 
S 6 HOH A 15 415 10 HOH HOH . 
S 6 HOH A 16 416 37 HOH HOH . 
S 6 HOH A 17 417 9 HOH HOH . 
S 6 HOH A 18 418 12 HOH HOH . 
S 6 HOH A 19 419 13 HOH HOH . 
S 6 HOH A 20 420 40 HOH HOH . 
S 6 HOH A 21 421 27 HOH HOH . 
S 6 HOH A 22 422 29 HOH HOH . 
S 6 HOH A 23 423 21 HOH HOH . 
S 6 HOH A 24 424 28 HOH HOH . 
S 6 HOH A 25 425 11 HOH HOH . 
T 6 HOH B 1 301 32 HOH HOH . 
T 6 HOH B 2 302 3 HOH HOH . 
T 6 HOH B 3 303 2 HOH HOH . 
T 6 HOH B 4 304 33 HOH HOH . 
T 6 HOH B 5 305 31 HOH HOH . 
T 6 HOH B 6 306 38 HOH HOH . 
T 6 HOH B 7 307 14 HOH HOH . 
T 6 HOH B 8 308 39 HOH HOH . 
T 6 HOH B 9 309 23 HOH HOH . 
T 6 HOH B 10 310 19 HOH HOH . 
T 6 HOH B 11 311 16 HOH HOH . 
T 6 HOH B 12 312 18 HOH HOH . 
T 6 HOH B 13 313 15 HOH HOH . 
T 6 HOH B 14 314 22 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 4 17.596 -14.71 -9.758 1 52.56 ? C1 GOL 304 A 1 
HETATM 2 O O1 GOL . . . F 4 17.7 -15.287 -8.438 1 52.65 ? O1 GOL 304 A 1 
HETATM 3 C C2 GOL . . . F 4 18.827 -15.125 -10.683 1 54.19 ? C2 GOL 304 A 1 
HETATM 4 O O2 GOL . . . F 4 18.559 -16.276 -11.441 1 59.97 ? O2 GOL 304 A 1 
HETATM 5 C C3 GOL . . . F 4 19.09 -13.892 -11.622 1 54.69 ? C3 GOL 304 A 1 
HETATM 6 O O3 GOL . . . F 4 20.078 -13.086 -11.03 1 48.22 ? O3 GOL 304 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           232 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#