data_8P3W # _model_server_result.job_id rUGt86Nklmdy-aoUx3M9xw _model_server_result.datetime_utc '2024-10-18 12:19:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8p3w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1001}' # _entry.id 8P3W # _exptl.entry_id 8P3W _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 256.424 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PALMITIC ACID' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8P3W _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8P3W _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 K N N ? 3 N N N ? 3 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 39 E CYS 40 1_555 E SG CYS 67 E CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? disulf ? disulf2 E SG CYS 66 E CYS 67 1_555 E SG CYS 76 E CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf3 F SG CYS 39 F CYS 40 1_555 F SG CYS 67 F CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 F SG CYS 66 F CYS 67 1_555 F SG CYS 76 F CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 G SG CYS 39 G CYS 40 1_555 G SG CYS 67 G CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf6 G SG CYS 66 G CYS 67 1_555 G SG CYS 76 G CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf7 H SG CYS 39 H CYS 40 1_555 H SG CYS 67 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 H SG CYS 66 H CYS 67 1_555 H SG CYS 76 H CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C16 H32 O2' _chem_comp.formula_weight 256.424 _chem_comp.id PLM _chem_comp.mon_nstd_flag . _chem_comp.name 'PALMITIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PLM sing 324 n n C1 O2 PLM doub 325 n n C1 C2 PLM sing 326 n n O1 H PLM sing 327 n n C2 C3 PLM sing 328 n n C2 H21 PLM sing 329 n n C2 H22 PLM sing 330 n n C3 C4 PLM sing 331 n n C3 H31 PLM sing 332 n n C3 H32 PLM sing 333 n n C4 C5 PLM sing 334 n n C4 H41 PLM sing 335 n n C4 H42 PLM sing 336 n n C5 C6 PLM sing 337 n n C5 H51 PLM sing 338 n n C5 H52 PLM sing 339 n n C6 C7 PLM sing 340 n n C6 H61 PLM sing 341 n n C6 H62 PLM sing 342 n n C7 C8 PLM sing 343 n n C7 H71 PLM sing 344 n n C7 H72 PLM sing 345 n n C8 C9 PLM sing 346 n n C8 H81 PLM sing 347 n n C8 H82 PLM sing 348 n n C9 CA PLM sing 349 n n C9 H91 PLM sing 350 n n C9 H92 PLM sing 351 n n CA CB PLM sing 352 n n CA HA1 PLM sing 353 n n CA HA2 PLM sing 354 n n CB CC PLM sing 355 n n CB HB1 PLM sing 356 n n CB HB2 PLM sing 357 n n CC CD PLM sing 358 n n CC HC1 PLM sing 359 n n CC HC2 PLM sing 360 n n CD CE PLM sing 361 n n CD HD1 PLM sing 362 n n CD HD2 PLM sing 363 n n CE CF PLM sing 364 n n CE HE1 PLM sing 365 n n CE HE2 PLM sing 366 n n CF CG PLM sing 367 n n CF HF1 PLM sing 368 n n CF HF2 PLM sing 369 n n CG HG1 PLM sing 370 n n CG HG2 PLM sing 371 n n CG HG3 PLM sing 372 n n # _atom_sites.entry_id 8P3W _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 PLM A 1 1001 1001 PLM PLM . J 4 OLC A 1 1002 1101 OLC OLC . K 3 PLM B 1 1001 1001 PLM PLM . L 4 OLC B 1 1002 1101 OLC OLC . M 5 POV B 1 1003 1201 POV POV . N 3 PLM C 1 1001 1001 PLM PLM . O 4 OLC C 1 1002 1101 OLC OLC . P 3 PLM D 1 1001 1001 PLM PLM . Q 4 OLC D 1 1002 1101 OLC OLC . R 5 POV D 1 1003 1201 POV POV . S 5 POV E 1 1201 1201 POV POV . T 5 POV F 1 1301 1301 POV POV . U 5 POV G 1 1201 1201 POV POV . V 5 POV H 1 1301 1301 POV POV . W 6 HOH A 1 1101 21 HOH HOH . W 6 HOH A 2 1102 3 HOH HOH . W 6 HOH A 3 1103 5 HOH HOH . X 6 HOH B 1 1101 22 HOH HOH . X 6 HOH B 2 1102 16 HOH HOH . X 6 HOH B 3 1103 20 HOH HOH . X 6 HOH B 4 1104 8 HOH HOH . X 6 HOH B 5 1105 11 HOH HOH . X 6 HOH B 6 1106 12 HOH HOH . X 6 HOH B 7 1107 17 HOH HOH . X 6 HOH B 8 1108 14 HOH HOH . X 6 HOH B 9 1109 24 HOH HOH . Y 6 HOH C 1 1101 14 HOH HOH . Y 6 HOH C 2 1102 21 HOH HOH . Y 6 HOH C 3 1103 8 HOH HOH . Y 6 HOH C 4 1104 2 HOH HOH . Y 6 HOH C 5 1105 15 HOH HOH . Y 6 HOH C 6 1106 3 HOH HOH . Z 6 HOH D 1 1101 22 HOH HOH . Z 6 HOH D 2 1102 20 HOH HOH . Z 6 HOH D 3 1103 16 HOH HOH . Z 6 HOH D 4 1104 12 HOH HOH . Z 6 HOH D 5 1105 2 HOH HOH . Z 6 HOH D 6 1106 11 HOH HOH . Z 6 HOH D 7 1107 15 HOH HOH . Z 6 HOH D 8 1108 17 HOH HOH . Z 6 HOH D 9 1109 25 HOH HOH . AA 6 HOH E 1 1301 23 HOH HOH . BA 6 HOH F 1 1401 18 HOH HOH . BA 6 HOH F 2 1402 19 HOH HOH . CA 6 HOH G 1 1301 23 HOH HOH . DA 6 HOH H 1 1401 18 HOH HOH . DA 6 HOH H 2 1402 19 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLM . . . K 3 189.719 174.038 179.876 1 142.9 ? C1 PLM 1001 B 1 HETATM 2 O O1 PLM . . . K 3 189.688 175.207 179.429 1 123.38 ? O1 PLM 1001 B 1 HETATM 3 O O2 PLM . . . K 3 190.302 173.096 179.301 1 159.98 ? O2 PLM 1001 B 1 HETATM 4 C C2 PLM . . . K 3 189.007 173.731 181.185 1 143.59 ? C2 PLM 1001 B 1 HETATM 5 C C3 PLM . . . K 3 188.938 174.866 182.17 1 136.49 ? C3 PLM 1001 B 1 HETATM 6 C C4 PLM . . . K 3 189.71 174.593 183.46 1 115.51 ? C4 PLM 1001 B 1 HETATM 7 C C5 PLM . . . K 3 189.076 175.156 184.713 1 100.76 ? C5 PLM 1001 B 1 HETATM 8 C C6 PLM . . . K 3 188.66 174.109 185.721 1 97.47 ? C6 PLM 1001 B 1 HETATM 9 C C7 PLM . . . K 3 187.289 174.34 186.294 1 106.55 ? C7 PLM 1001 B 1 HETATM 10 C C8 PLM . . . K 3 186.64 173.132 186.928 1 83.51 ? C8 PLM 1001 B 1 HETATM 11 C C9 PLM . . . K 3 185.441 173.518 187.744 1 87.07 ? C9 PLM 1001 B 1 HETATM 12 C CA PLM . . . K 3 184.762 172.388 188.449 1 76.56 ? CA PLM 1001 B 1 HETATM 13 C CB PLM . . . K 3 183.46 172.781 189.059 1 80.35 ? CB PLM 1001 B 1 HETATM 14 C CC PLM . . . K 3 183.485 172.927 190.564 1 104.91 ? CC PLM 1001 B 1 HETATM 15 C CD PLM . . . K 3 182.259 173.594 191.125 1 104.61 ? CD PLM 1001 B 1 HETATM 16 C CE PLM . . . K 3 182.521 174.511 192.297 1 81.34 ? CE PLM 1001 B 1 HETATM 17 C CF PLM . . . K 3 181.355 175.42 192.525 1 78.94 ? CF PLM 1001 B 1 HETATM 18 C CG PLM . . . K 3 180.596 175.027 193.743 1 100.12 ? CG PLM 1001 B 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 18 #