data_8P3W
#
_model_server_result.job_id            '_T688ShmcgmbjsunkeisYQ' 
_model_server_result.datetime_utc      '2024-10-18 12:29:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8p3w 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":1003}' 
#
_entry.id    8P3W 
#
_exptl.entry_id    8P3W 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              760.076 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8P3W 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8P3W 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 M N N 
? 5 R N N 
? 5 S N N 
? 5 T N N 
? 5 U N N 
? 5 V N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 E SG CYS 39 E CYS 40 1_555 E SG CYS 67 E CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? 
disulf ? disulf2 E SG CYS 66 E CYS 67 1_555 E SG CYS 76 E CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf3 F SG CYS 39 F CYS 40 1_555 F SG CYS 67 F CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf4 F SG CYS 66 F CYS 67 1_555 F SG CYS 76 F CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf5 G SG CYS 39 G CYS 40 1_555 G SG CYS 67 G CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
disulf ? disulf6 G SG CYS 66 G CYS 67 1_555 G SG CYS 76 G CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf7 H SG CYS 39 H CYS 40 1_555 H SG CYS 67 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf8 H SG CYS 66 H CYS 67 1_555 H SG CYS 76 H CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
#
_chem_comp.formula           'C42 H82 N O8 P' 
_chem_comp.formula_weight    760.076 
_chem_comp.id                POV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     POPC 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N C12 POV sing 373 n n 
N C13 POV sing 374 n n 
N C14 POV sing 375 n n 
N C15 POV sing 376 n n 
P O11 POV sing 377 n n 
P O12 POV sing 378 n n 
P O13 POV sing 379 n n 
P O14 POV doub 380 n n 
C1 C2 POV sing 381 n n 
C1 O11 POV sing 382 n n 
C1 H1 POV sing 383 n n 
C1 H1A POV sing 384 n n 
C2 C3 POV sing 385 n n 
C2 O21 POV sing 386 n n 
C2 H2 POV sing 387 n n 
C3 O31 POV sing 388 n n 
C3 H3 POV sing 389 n n 
C3 H3A POV sing 390 n n 
C210 C211 POV sing 391 n n 
C210 C29 POV doub 392 z n 
C210 H210 POV sing 393 n n 
C310 C311 POV sing 394 n n 
C310 C39 POV sing 395 n n 
C310 H310 POV sing 396 n n 
C310 H31A POV sing 397 n n 
C11 C12 POV sing 398 n n 
C11 O12 POV sing 399 n n 
C11 H11 POV sing 400 n n 
C11 H11A POV sing 401 n n 
C211 C212 POV sing 402 n n 
C211 H211 POV sing 403 n n 
C211 H21A POV sing 404 n n 
C311 C312 POV sing 405 n n 
C311 H311 POV sing 406 n n 
C311 H31B POV sing 407 n n 
C12 H12 POV sing 408 n n 
C12 H12A POV sing 409 n n 
C212 C213 POV sing 410 n n 
C212 H212 POV sing 411 n n 
C212 H21B POV sing 412 n n 
C312 C313 POV sing 413 n n 
C312 H312 POV sing 414 n n 
C312 H31C POV sing 415 n n 
C13 H13 POV sing 416 n n 
C13 H13A POV sing 417 n n 
C13 H13B POV sing 418 n n 
C213 C214 POV sing 419 n n 
C213 H213 POV sing 420 n n 
C213 H21C POV sing 421 n n 
C313 C314 POV sing 422 n n 
C313 H313 POV sing 423 n n 
C313 H31D POV sing 424 n n 
C14 H14 POV sing 425 n n 
C14 H14A POV sing 426 n n 
C14 H14B POV sing 427 n n 
C214 C215 POV sing 428 n n 
C214 H214 POV sing 429 n n 
C214 H21D POV sing 430 n n 
C314 C315 POV sing 431 n n 
C314 H314 POV sing 432 n n 
C314 H31E POV sing 433 n n 
C15 H15 POV sing 434 n n 
C15 H15A POV sing 435 n n 
C15 H15B POV sing 436 n n 
C215 C216 POV sing 437 n n 
C215 H215 POV sing 438 n n 
C215 H21E POV sing 439 n n 
C315 C316 POV sing 440 n n 
C315 H315 POV sing 441 n n 
C315 H31F POV sing 442 n n 
C216 C217 POV sing 443 n n 
C216 H216 POV sing 444 n n 
C216 H21F POV sing 445 n n 
C316 H316 POV sing 446 n n 
C316 H31G POV sing 447 n n 
C316 H31H POV sing 448 n n 
C217 C218 POV sing 449 n n 
C217 H217 POV sing 450 n n 
C217 H21G POV sing 451 n n 
C218 H218 POV sing 452 n n 
C218 H21H POV sing 453 n n 
C218 H21J POV sing 454 n n 
C21 O21 POV sing 455 n n 
C21 C22 POV sing 456 n n 
C21 O22 POV doub 457 n n 
C22 C23 POV sing 458 n n 
C22 H22 POV sing 459 n n 
C22 H22A POV sing 460 n n 
C23 C24 POV sing 461 n n 
C23 H23 POV sing 462 n n 
C23 H23A POV sing 463 n n 
C24 C25 POV sing 464 n n 
C24 H24 POV sing 465 n n 
C24 H24A POV sing 466 n n 
C25 C26 POV sing 467 n n 
C25 H25 POV sing 468 n n 
C25 H25A POV sing 469 n n 
C26 C27 POV sing 470 n n 
C26 H26 POV sing 471 n n 
C26 H26A POV sing 472 n n 
C27 C28 POV sing 473 n n 
C27 H27 POV sing 474 n n 
C27 H27A POV sing 475 n n 
C28 C29 POV sing 476 n n 
C28 H28 POV sing 477 n n 
C28 H28A POV sing 478 n n 
C29 H29 POV sing 479 n n 
C31 O31 POV sing 480 n n 
C31 C32 POV sing 481 n n 
C31 O32 POV doub 482 n n 
C32 C33 POV sing 483 n n 
C32 H32 POV sing 484 n n 
C32 H32A POV sing 485 n n 
C33 C34 POV sing 486 n n 
C33 H33 POV sing 487 n n 
C33 H33A POV sing 488 n n 
C34 C35 POV sing 489 n n 
C34 H34 POV sing 490 n n 
C34 H34A POV sing 491 n n 
C35 C36 POV sing 492 n n 
C35 H35 POV sing 493 n n 
C35 H35A POV sing 494 n n 
C36 C37 POV sing 495 n n 
C36 H36 POV sing 496 n n 
C36 H36A POV sing 497 n n 
C37 C38 POV sing 498 n n 
C37 H37 POV sing 499 n n 
C37 H37A POV sing 500 n n 
C38 C39 POV sing 501 n n 
C38 H38 POV sing 502 n n 
C38 H38A POV sing 503 n n 
C39 H39 POV sing 504 n n 
C39 H39A POV sing 505 n n 
#
_atom_sites.entry_id                     8P3W 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 PLM A 1 1001 1001 PLM PLM . 
J 4 OLC A 1 1002 1101 OLC OLC . 
K 3 PLM B 1 1001 1001 PLM PLM . 
L 4 OLC B 1 1002 1101 OLC OLC . 
M 5 POV B 1 1003 1201 POV POV . 
N 3 PLM C 1 1001 1001 PLM PLM . 
O 4 OLC C 1 1002 1101 OLC OLC . 
P 3 PLM D 1 1001 1001 PLM PLM . 
Q 4 OLC D 1 1002 1101 OLC OLC . 
R 5 POV D 1 1003 1201 POV POV . 
S 5 POV E 1 1201 1201 POV POV . 
T 5 POV F 1 1301 1301 POV POV . 
U 5 POV G 1 1201 1201 POV POV . 
V 5 POV H 1 1301 1301 POV POV . 
W 6 HOH A 1 1101 21 HOH HOH . 
W 6 HOH A 2 1102 3 HOH HOH . 
W 6 HOH A 3 1103 5 HOH HOH . 
X 6 HOH B 1 1101 22 HOH HOH . 
X 6 HOH B 2 1102 16 HOH HOH . 
X 6 HOH B 3 1103 20 HOH HOH . 
X 6 HOH B 4 1104 8 HOH HOH . 
X 6 HOH B 5 1105 11 HOH HOH . 
X 6 HOH B 6 1106 12 HOH HOH . 
X 6 HOH B 7 1107 17 HOH HOH . 
X 6 HOH B 8 1108 14 HOH HOH . 
X 6 HOH B 9 1109 24 HOH HOH . 
Y 6 HOH C 1 1101 14 HOH HOH . 
Y 6 HOH C 2 1102 21 HOH HOH . 
Y 6 HOH C 3 1103 8 HOH HOH . 
Y 6 HOH C 4 1104 2 HOH HOH . 
Y 6 HOH C 5 1105 15 HOH HOH . 
Y 6 HOH C 6 1106 3 HOH HOH . 
Z 6 HOH D 1 1101 22 HOH HOH . 
Z 6 HOH D 2 1102 20 HOH HOH . 
Z 6 HOH D 3 1103 16 HOH HOH . 
Z 6 HOH D 4 1104 12 HOH HOH . 
Z 6 HOH D 5 1105 2 HOH HOH . 
Z 6 HOH D 6 1106 11 HOH HOH . 
Z 6 HOH D 7 1107 15 HOH HOH . 
Z 6 HOH D 8 1108 17 HOH HOH . 
Z 6 HOH D 9 1109 25 HOH HOH . 
AA 6 HOH E 1 1301 23 HOH HOH . 
BA 6 HOH F 1 1401 18 HOH HOH . 
BA 6 HOH F 2 1402 19 HOH HOH . 
CA 6 HOH G 1 1301 23 HOH HOH . 
DA 6 HOH H 1 1401 18 HOH HOH . 
DA 6 HOH H 2 1402 19 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N POV . . . M 5 193.184 166.883 176.92 1 180.29 ? N POV 1003 B 1 
HETATM 2 P P POV . . . M 5 196.127 166.01 179.779 1 191.28 ? P POV 1003 B 1 
HETATM 3 C C1 POV . . . M 5 195.973 163.349 179.712 1 118.97 ? C1 POV 1003 B 1 
HETATM 4 C C2 POV . . . M 5 195.924 162.31 180.81 1 135.91 ? C2 POV 1003 B 1 
HETATM 5 C C3 POV . . . M 5 195.713 160.908 180.272 1 131.33 ? C3 POV 1003 B 1 
HETATM 6 C C210 POV . . . M 5 190.858 165.69 192.282 1 113.43 ? C210 POV 1003 B 1 
HETATM 7 C C11 POV . . . M 5 195.379 167.77 177.937 1 202.44 ? C11 POV 1003 B 1 
HETATM 8 O O11 POV . . . M 5 195.382 164.623 180.113 1 138.88 ? O11 POV 1003 B 1 
HETATM 9 C C211 POV . . . M 5 189.543 165.891 192.979 1 108.2 ? C211 POV 1003 B 1 
HETATM 10 C C12 POV . . . M 5 193.882 167.906 177.794 1 203.86 ? C12 POV 1003 B 1 
HETATM 11 O O12 POV . . . M 5 195.672 166.39 178.284 1 202.7 ? O12 POV 1003 B 1 
HETATM 12 C C212 POV . . . M 5 189.673 166.234 194.436 1 114.48 ? C212 POV 1003 B 1 
HETATM 13 C C13 POV . . . M 5 193.966 166.63 175.679 1 181.45 ? C13 POV 1003 B 1 
HETATM 14 O O13 POV . . . M 5 195.6 167.051 180.725 1 167.63 -1 O13 POV 1003 B 1 
HETATM 15 C C213 POV . . . M 5 188.958 167.506 194.859 1 110.44 ? C213 POV 1003 B 1 
HETATM 16 C C14 POV . . . M 5 191.86 167.439 176.54 1 167.34 ? C14 POV 1003 B 1 
HETATM 17 O O14 POV . . . M 5 197.605 165.749 179.773 1 205.21 ? O14 POV 1003 B 1 
HETATM 18 C C15 POV . . . M 5 192.994 165.589 177.639 1 168.07 ? C15 POV 1003 B 1 
HETATM 19 C C21 POV . . . M 5 195.295 162.883 183.05 1 123.15 ? C21 POV 1003 B 1 
HETATM 20 O O21 POV . . . M 5 194.894 162.636 181.791 1 128.89 ? O21 POV 1003 B 1 
HETATM 21 C C22 POV . . . M 5 194.461 162.177 184.077 1 123.38 ? C22 POV 1003 B 1 
HETATM 22 O O22 POV . . . M 5 196.22 163.613 183.319 1 143.01 ? O22 POV 1003 B 1 
HETATM 23 C C23 POV . . . M 5 194.034 163.078 185.201 1 133.89 ? C23 POV 1003 B 1 
HETATM 24 C C24 POV . . . M 5 193.742 162.342 186.501 1 128.49 ? C24 POV 1003 B 1 
HETATM 25 C C25 POV . . . M 5 193.035 163.18 187.543 1 132.55 ? C25 POV 1003 B 1 
HETATM 26 C C26 POV . . . M 5 193.632 163.112 188.929 1 153 ? C26 POV 1003 B 1 
HETATM 27 C C27 POV . . . M 5 192.623 163.261 190.061 1 146.32 ? C27 POV 1003 B 1 
HETATM 28 C C28 POV . . . M 5 192.264 164.672 190.424 1 145.43 ? C28 POV 1003 B 1 
HETATM 29 C C29 POV . . . M 5 191.134 164.749 191.406 1 124.01 ? C29 POV 1003 B 1 
HETATM 30 C C31 POV . . . M 5 195.18 158.739 181.078 1 136.35 ? C31 POV 1003 B 1 
HETATM 31 O O31 POV . . . M 5 195.218 160.05 181.325 1 126.13 ? O31 POV 1003 B 1 
HETATM 32 C C32 POV . . . M 5 194.598 157.987 182.251 1 136.55 ? C32 POV 1003 B 1 
HETATM 33 O O32 POV . . . M 5 195.577 158.241 180.041 1 127.36 ? O32 POV 1003 B 1 
HETATM 34 C C33 POV . . . M 5 195.615 157.574 183.271 1 127 ? C33 POV 1003 B 1 
HETATM 35 C C34 POV . . . M 5 194.981 157.215 184.601 1 123.18 ? C34 POV 1003 B 1 
HETATM 36 C C35 POV . . . M 5 194.754 158.395 185.521 1 112.31 ? C35 POV 1003 B 1 
HETATM 37 C C36 POV . . . M 5 194.052 158.062 186.826 1 100.03 ? C36 POV 1003 B 1 
HETATM 38 C C37 POV . . . M 5 194.173 159.108 187.923 1 102.75 ? C37 POV 1003 B 1 
HETATM 39 C C38 POV . . . M 5 193.47 158.745 189.219 1 101.31 ? C38 POV 1003 B 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           39 
#