data_8P42 # _model_server_result.job_id -GJjKaetFm_hHlwakmqqAg _model_server_result.datetime_utc '2024-10-16 10:33:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8p42 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 8P42 # _exptl.entry_id 8P42 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 556.624 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2~{S})-1-[(4-fluorophenyl)methylsulfonyl]-~{N}-[(2~{S})-3-(4-fluorophenyl)-1-oxidanylidene-1-(pyridin-3-ylmethylamino)propan-2-yl]piperidine-2-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8P42 _cell.length_a 87.744 _cell.length_b 87.744 _cell.length_c 57.505 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8P42 _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,I 1 1 B,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # _chem_comp.formula 'C28 H30 F2 N4 O4 S' _chem_comp.formula_weight 556.624 _chem_comp.id WRX _chem_comp.mon_nstd_flag . _chem_comp.name (2~{S})-1-[(4-fluorophenyl)methylsulfonyl]-~{N}-[(2~{S})-3-(4-fluorophenyl)-1-oxidanylidene-1-(pyridin-3-ylmethylamino)propan-2-yl]piperidine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F1 C1 WRX sing 392 n n C1 C28 WRX doub 393 n y C1 C2 WRX sing 394 n y C28 C27 WRX sing 395 n y C2 C3 WRX doub 396 n y C27 C4 WRX doub 397 n y C3 C4 WRX sing 398 n y C4 C5 WRX sing 399 n n O1 S1 WRX doub 400 n n O4 S1 WRX doub 401 n n S1 C5 WRX sing 402 n n S1 N1 WRX sing 403 n n F2 C13 WRX sing 404 n n N1 C26 WRX sing 405 n n N1 C6 WRX sing 406 n n C13 C12 WRX doub 407 n y C13 C14 WRX sing 408 n y C26 C25 WRX sing 409 n n C12 C11 WRX sing 410 n y C14 C15 WRX doub 411 n y C25 C24 WRX sing 412 n n C6 C23 WRX sing 413 n n C6 C7 WRX sing 414 n n C23 C24 WRX sing 415 n n C11 C10 WRX doub 416 n y C15 C10 WRX sing 417 n y C7 N2 WRX sing 418 n n C7 O3 WRX doub 419 n n N2 C8 WRX sing 420 n n C10 C9 WRX sing 421 n n O2 C16 WRX doub 422 n n C8 C9 WRX sing 423 n n C8 C16 WRX sing 424 n n C16 N3 WRX sing 425 n n C19 N4 WRX doub 426 n y C19 C18 WRX sing 427 n y N4 C20 WRX sing 428 n y N3 C17 WRX sing 429 n n C17 C18 WRX sing 430 n n C18 C22 WRX doub 431 n y C20 C21 WRX doub 432 n y C22 C21 WRX sing 433 n y N3 H1 WRX sing 434 n n C5 H2 WRX sing 435 n n C5 H3 WRX sing 436 n n C6 H4 WRX sing 437 n n C8 H5 WRX sing 438 n n C15 H6 WRX sing 439 n n C17 H7 WRX sing 440 n n C17 H8 WRX sing 441 n n C20 H9 WRX sing 442 n n C21 H10 WRX sing 443 n n C22 H11 WRX sing 444 n n C24 H12 WRX sing 445 n n C24 H13 WRX sing 446 n n C26 H14 WRX sing 447 n n C26 H15 WRX sing 448 n n C28 H16 WRX sing 449 n n C2 H17 WRX sing 450 n n C3 H18 WRX sing 451 n n N2 H19 WRX sing 452 n n C9 H20 WRX sing 453 n n C9 H21 WRX sing 454 n n C11 H22 WRX sing 455 n n C12 H23 WRX sing 456 n n C14 H24 WRX sing 457 n n C19 H25 WRX sing 458 n n C23 H26 WRX sing 459 n n C23 H27 WRX sing 460 n n C25 H28 WRX sing 461 n n C25 H29 WRX sing 462 n n C27 H30 WRX sing 463 n n # _atom_sites.entry_id 8P42 _atom_sites.fract_transf_matrix[1][1] 0.011397 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011397 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01739 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 WRX A 1 201 201 WRX LIG . D 3 PEG A 1 202 202 PEG PEG . E 3 PEG A 1 203 203 PEG PEG . F 3 PEG A 1 204 202 PEG PEG . G 2 WRX D 1 201 201 WRX LIG . H 3 PEG D 1 202 203 PEG PEG . I 4 HOH A 1 301 41 HOH HOH . I 4 HOH A 2 302 17 HOH HOH . I 4 HOH A 3 303 63 HOH HOH . I 4 HOH A 4 304 65 HOH HOH . I 4 HOH A 5 305 73 HOH HOH . I 4 HOH A 6 306 68 HOH HOH . I 4 HOH A 7 307 9 HOH HOH . I 4 HOH A 8 308 11 HOH HOH . I 4 HOH A 9 309 75 HOH HOH . I 4 HOH A 10 310 49 HOH HOH . I 4 HOH A 11 311 45 HOH HOH . I 4 HOH A 12 312 46 HOH HOH . I 4 HOH A 13 313 74 HOH HOH . I 4 HOH A 14 314 59 HOH HOH . I 4 HOH A 15 315 33 HOH HOH . I 4 HOH A 16 316 60 HOH HOH . I 4 HOH A 17 317 28 HOH HOH . I 4 HOH A 18 318 40 HOH HOH . I 4 HOH A 19 319 27 HOH HOH . I 4 HOH A 20 320 1 HOH HOH . I 4 HOH A 21 321 30 HOH HOH . I 4 HOH A 22 322 44 HOH HOH . I 4 HOH A 23 323 55 HOH HOH . I 4 HOH A 24 324 6 HOH HOH . I 4 HOH A 25 325 3 HOH HOH . I 4 HOH A 26 326 26 HOH HOH . I 4 HOH A 27 327 39 HOH HOH . I 4 HOH A 28 328 58 HOH HOH . I 4 HOH A 29 329 77 HOH HOH . I 4 HOH A 30 330 19 HOH HOH . I 4 HOH A 31 331 5 HOH HOH . I 4 HOH A 32 332 64 HOH HOH . I 4 HOH A 33 333 72 HOH HOH . I 4 HOH A 34 334 54 HOH HOH . J 4 HOH D 1 301 10 HOH HOH . J 4 HOH D 2 302 61 HOH HOH . J 4 HOH D 3 303 18 HOH HOH . J 4 HOH D 4 304 76 HOH HOH . J 4 HOH D 5 305 12 HOH HOH . J 4 HOH D 6 306 15 HOH HOH . J 4 HOH D 7 307 71 HOH HOH . J 4 HOH D 8 308 14 HOH HOH . J 4 HOH D 9 309 31 HOH HOH . J 4 HOH D 10 310 21 HOH HOH . J 4 HOH D 11 311 8 HOH HOH . J 4 HOH D 12 312 57 HOH HOH . J 4 HOH D 13 313 47 HOH HOH . J 4 HOH D 14 314 36 HOH HOH . J 4 HOH D 15 315 7 HOH HOH . J 4 HOH D 16 316 67 HOH HOH . J 4 HOH D 17 317 24 HOH HOH . J 4 HOH D 18 318 52 HOH HOH . J 4 HOH D 19 319 2 HOH HOH . J 4 HOH D 20 320 50 HOH HOH . J 4 HOH D 21 321 22 HOH HOH . J 4 HOH D 22 322 35 HOH HOH . J 4 HOH D 23 323 66 HOH HOH . J 4 HOH D 24 324 70 HOH HOH . J 4 HOH D 25 325 4 HOH HOH . J 4 HOH D 26 326 56 HOH HOH . J 4 HOH D 27 327 23 HOH HOH . J 4 HOH D 28 328 48 HOH HOH . J 4 HOH D 29 329 38 HOH HOH . J 4 HOH D 30 330 53 HOH HOH . J 4 HOH D 31 331 34 HOH HOH . J 4 HOH D 32 332 29 HOH HOH . J 4 HOH D 33 333 20 HOH HOH . J 4 HOH D 34 334 43 HOH HOH . J 4 HOH D 35 335 37 HOH HOH . J 4 HOH D 36 336 62 HOH HOH . J 4 HOH D 37 337 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 WRX . A . C 2 -10.158 15.965 -0.447 0.5 34.88 ? N1 WRX 201 A 1 HETATM 2 N N1 WRX . B . C 2 -10.233 15.957 -0.396 0.5 34.88 ? N1 WRX 201 A 1 HETATM 3 N N3 WRX . A . C 2 -9.216 15.056 -6.75 0.5 33.63 ? N3 WRX 201 A 1 HETATM 4 N N3 WRX . B . C 2 -9.191 14.028 -5.278 0.5 33.63 ? N3 WRX 201 A 1 HETATM 5 C C4 WRX . A . C 2 -7.747 13.115 1.032 0.5 42.85 ? C4 WRX 201 A 1 HETATM 6 C C4 WRX . B . C 2 -7.77 13.124 1.036 0.5 42.85 ? C4 WRX 201 A 1 HETATM 7 C C5 WRX . A . C 2 -8.214 14.142 0.045 0.5 39.42 ? C5 WRX 201 A 1 HETATM 8 C C5 WRX . B . C 2 -8.236 14.177 0.076 0.5 39.42 ? C5 WRX 201 A 1 HETATM 9 C C6 WRX . A . C 2 -11.268 15.833 -1.402 0.5 33.43 ? C6 WRX 201 A 1 HETATM 10 C C6 WRX . B . C 2 -11.31 15.762 -1.378 0.5 33.43 ? C6 WRX 201 A 1 HETATM 11 C C7 WRX . A . C 2 -10.915 15.888 -2.895 0.5 33.04 ? C7 WRX 201 A 1 HETATM 12 C C7 WRX . B . C 2 -10.933 15.824 -2.868 0.5 33.04 ? C7 WRX 201 A 1 HETATM 13 C C8 WRX . A . C 2 -9.217 16.181 -4.602 0.5 35.07 ? C8 WRX 201 A 1 HETATM 14 C C8 WRX . B . C 2 -9.176 16.344 -4.458 0.5 35.07 ? C8 WRX 201 A 1 HETATM 15 C C10 WRX . A . C 2 -6.771 16.428 -3.935 0.5 38.23 ? C10 WRX 201 A 1 HETATM 16 C C10 WRX . B . C 2 -6.76 16.524 -3.644 0.5 38.23 ? C10 WRX 201 A 1 HETATM 17 C C13 WRX . A . C 2 -4.606 15.286 -2.677 0.5 42.28 ? C13 WRX 201 A 1 HETATM 18 C C13 WRX . B . C 2 -4.596 15.24 -2.524 0.5 42.28 ? C13 WRX 201 A 1 HETATM 19 C C15 WRX . A . C 2 -5.931 15.551 -4.608 0.5 38.87 ? C15 WRX 201 A 1 HETATM 20 C C15 WRX . B . C 2 -5.93 15.714 -4.41 0.5 38.87 ? C15 WRX 201 A 1 HETATM 21 C C17 WRX . A . C 2 -9.037 13.941 -7.665 0.5 41.55 ? C17 WRX 201 A 1 HETATM 22 C C17 WRX . B . C 2 -9.033 12.993 -6.289 0.5 41.55 ? C17 WRX 201 A 1 HETATM 23 C C20 WRX . A . C 2 -12.469 11.504 -7.935 0.5 41.97 ? C20 WRX 201 A 1 HETATM 24 C C20 WRX . B . C 2 -12.612 12.255 -8.414 0.5 41.97 ? C20 WRX 201 A 1 HETATM 25 C C21 WRX . A . C 2 -11.285 10.905 -7.616 0.5 39.15 ? C21 WRX 201 A 1 HETATM 26 C C21 WRX . B . C 2 -11.948 11.183 -7.882 0.5 39.15 ? C21 WRX 201 A 1 HETATM 27 C C22 WRX . A . C 2 -10.158 11.685 -7.526 0.5 43.41 ? C22 WRX 201 A 1 HETATM 28 C C22 WRX . B . C 2 -10.781 11.409 -7.192 0.5 43.41 ? C22 WRX 201 A 1 HETATM 29 C C24 WRX . A . C 2 -11.867 17.752 0.101 0.5 35.17 ? C24 WRX 201 A 1 HETATM 30 C C24 WRX . B . C 2 -11.827 18.202 -1.088 0.5 35.17 ? C24 WRX 201 A 1 HETATM 31 C C26 WRX . A . C 2 -9.48 17.263 -0.428 0.5 34.48 ? C26 WRX 201 A 1 HETATM 32 C C26 WRX . B . C 2 -9.635 17.294 -0.33 0.5 34.48 ? C26 WRX 201 A 1 HETATM 33 C C28 WRX . A . C 2 -6.576 12.549 3.059 0.5 48.36 ? C28 WRX 201 A 1 HETATM 34 C C28 WRX . B . C 2 -6.589 12.502 3.043 0.5 48.36 ? C28 WRX 201 A 1 HETATM 35 F F1 WRX . A . C 2 -6.473 10.319 3.745 0.5 50.95 ? F1 WRX 201 A 1 HETATM 36 F F1 WRX . B . C 2 -6.506 10.254 3.68 0.5 50.95 ? F1 WRX 201 A 1 HETATM 37 C C1 WRX . A . C 2 -6.899 11.244 2.847 0.5 47.86 ? C1 WRX 201 A 1 HETATM 38 C C1 WRX . B . C 2 -6.928 11.204 2.805 0.5 47.86 ? C1 WRX 201 A 1 HETATM 39 C C2 WRX . A . C 2 -7.622 10.825 1.771 0.5 42.17 ? C2 WRX 201 A 1 HETATM 40 C C2 WRX . B . C 2 -7.667 10.817 1.726 0.5 42.17 ? C2 WRX 201 A 1 HETATM 41 C C3 WRX . A . C 2 -8.051 11.777 0.861 0.5 41.87 ? C3 WRX 201 A 1 HETATM 42 C C3 WRX . B . C 2 -8.091 11.793 0.839 0.5 41.87 ? C3 WRX 201 A 1 HETATM 43 S S1 WRX . A . C 2 -9.789 14.802 0.573 0.5 40.16 ? S1 WRX 201 A 1 HETATM 44 S S1 WRX . B . C 2 -9.828 14.791 0.611 0.5 40.16 ? S1 WRX 201 A 1 HETATM 45 O O1 WRX . A . C 2 -9.573 15.385 1.864 0.5 42.29 ? O1 WRX 201 A 1 HETATM 46 O O1 WRX . B . C 2 -9.63 15.362 1.912 0.5 42.29 ? O1 WRX 201 A 1 HETATM 47 N N2 WRX . A . C 2 -9.627 15.87 -3.247 0.5 37.11 ? N2 WRX 201 A 1 HETATM 48 N N2 WRX . B . C 2 -9.64 15.774 -3.207 0.5 37.11 ? N2 WRX 201 A 1 HETATM 49 C C9 WRX . A . C 2 -7.956 17.053 -4.626 0.5 32.8 ? C9 WRX 201 A 1 HETATM 50 C C9 WRX . B . C 2 -7.942 17.232 -4.257 0.5 32.8 ? C9 WRX 201 A 1 HETATM 51 C C11 WRX . A . C 2 -6.481 16.716 -2.609 0.5 40.97 ? C11 WRX 201 A 1 HETATM 52 C C11 WRX . B . C 2 -6.459 16.672 -2.296 0.5 40.97 ? C11 WRX 201 A 1 HETATM 53 C C12 WRX . A . C 2 -5.394 16.144 -1.968 0.5 40.44 ? C12 WRX 201 A 1 HETATM 54 C C12 WRX . B . C 2 -5.372 16.027 -1.725 0.5 40.44 ? C12 WRX 201 A 1 HETATM 55 F F2 WRX . A . C 2 -3.537 14.723 -2.057 0.5 49.2 ? F2 WRX 201 A 1 HETATM 56 F F2 WRX . B . C 2 -3.527 14.606 -1.972 0.5 49.2 ? F2 WRX 201 A 1 HETATM 57 C C14 WRX . A . C 2 -4.843 14.968 -3.98 0.5 39.05 ? C14 WRX 201 A 1 HETATM 58 C C14 WRX . B . C 2 -4.843 15.06 -3.853 0.5 39.05 ? C14 WRX 201 A 1 HETATM 59 C C16 WRX . A . C 2 -9.058 14.916 -5.442 0.5 37.2 ? C16 WRX 201 A 1 HETATM 60 C C16 WRX . B . C 2 -8.923 15.302 -5.546 0.5 37.2 ? C16 WRX 201 A 1 HETATM 61 C C18 WRX . A . C 2 -10.242 13.039 -7.75 0.5 43.92 ? C18 WRX 201 A 1 HETATM 62 C C18 WRX . B . C 2 -10.305 12.693 -7.044 0.5 43.92 ? C18 WRX 201 A 1 HETATM 63 C C19 WRX . A . C 2 -11.474 13.548 -8.061 0.5 35.33 ? C19 WRX 201 A 1 HETATM 64 C C19 WRX . B . C 2 -11.042 13.703 -7.615 0.5 35.33 ? C19 WRX 201 A 1 HETATM 65 N N4 WRX . A . C 2 -12.585 12.811 -8.162 0.5 40.57 ? N4 WRX 201 A 1 HETATM 66 N N4 WRX . B . C 2 -12.181 13.511 -8.293 0.5 40.57 ? N4 WRX 201 A 1 HETATM 67 O O2 WRX . A . C 2 -8.8 13.83 -4.924 0.5 39.88 ? O2 WRX 201 A 1 HETATM 68 O O2 WRX . B . C 2 -8.474 15.655 -6.635 0.5 39.88 ? O2 WRX 201 A 1 HETATM 69 O O3 WRX . A . C 2 -11.794 15.954 -3.75 0.5 29.31 ? O3 WRX 201 A 1 HETATM 70 O O3 WRX . B . C 2 -11.801 15.922 -3.733 0.5 29.31 ? O3 WRX 201 A 1 HETATM 71 C C23 WRX . A . C 2 -12.271 16.945 -1.126 0.5 32.65 ? C23 WRX 201 A 1 HETATM 72 C C23 WRX . B . C 2 -12.4 16.788 -1.103 0.5 32.65 ? C23 WRX 201 A 1 HETATM 73 C C25 WRX . A . C 2 -10.485 18.343 -0.075 0.5 35.1 ? C25 WRX 201 A 1 HETATM 74 C C25 WRX . B . C 2 -10.725 18.313 -0.054 0.5 35.1 ? C25 WRX 201 A 1 HETATM 75 O O4 WRX . A . C 2 -10.758 13.754 0.45 0.5 43.41 ? O4 WRX 201 A 1 HETATM 76 O O4 WRX . B . C 2 -10.766 13.714 0.471 0.5 43.41 ? O4 WRX 201 A 1 HETATM 77 C C27 WRX . A . C 2 -7.009 13.487 2.137 0.5 43.3 ? C27 WRX 201 A 1 HETATM 78 C C27 WRX . B . C 2 -7.018 13.465 2.144 0.5 43.3 ? C27 WRX 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 78 #