data_8P4Y # _model_server_result.job_id rMDjGZwJKy2M7VEhoRGdSA _model_server_result.datetime_utc '2024-11-17 09:30:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8p4y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 8P4Y # _exptl.entry_id 8P4Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 97.25 _cell.angle_beta 105.76 _cell.angle_gamma 95.45 _cell.entry_id 8P4Y _cell.length_a 33.84 _cell.length_b 36.98 _cell.length_c 44.67 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8P4Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 169 A GLU 169 1_555 A N MEN 170 A MEN 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale2 A C MEN 170 A MEN 170 1_555 A N GLU 171 A GLU 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 104 n n C1 C2 GOL sing 105 n n C1 H11 GOL sing 106 n n C1 H12 GOL sing 107 n n O1 HO1 GOL sing 108 n n C2 O2 GOL sing 109 n n C2 C3 GOL sing 110 n n C2 H2 GOL sing 111 n n O2 HO2 GOL sing 112 n n C3 O3 GOL sing 113 n n C3 H31 GOL sing 114 n n C3 H32 GOL sing 115 n n O3 HO3 GOL sing 116 n n # _atom_sites.entry_id 8P4Y _atom_sites.fract_transf_matrix[1][1] 0.029551 _atom_sites.fract_transf_matrix[1][2] 0.002819 _atom_sites.fract_transf_matrix[1][3] 0.0089 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027164 _atom_sites.fract_transf_matrix[2][3] 0.004365 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023559 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 301 1 GOL GOL . C 2 GOL A 1 302 2 GOL GOL . D 2 GOL A 1 303 3 GOL GOL . E 3 HOH A 1 401 11 HOH HOH . E 3 HOH A 2 402 3 HOH HOH . E 3 HOH A 3 403 15 HOH HOH . E 3 HOH A 4 404 10 HOH HOH . E 3 HOH A 5 405 16 HOH HOH . E 3 HOH A 6 406 2 HOH HOH . E 3 HOH A 7 407 9 HOH HOH . E 3 HOH A 8 408 1 HOH HOH . E 3 HOH A 9 409 4 HOH HOH . E 3 HOH A 10 410 6 HOH HOH . E 3 HOH A 11 411 12 HOH HOH . E 3 HOH A 12 412 14 HOH HOH . E 3 HOH A 13 413 5 HOH HOH . E 3 HOH A 14 414 18 HOH HOH . E 3 HOH A 15 415 7 HOH HOH . E 3 HOH A 16 416 17 HOH HOH . E 3 HOH A 17 417 8 HOH HOH . E 3 HOH A 18 418 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 23.223 -13.045 40.896 1 99.14 ? C1 GOL 301 A 1 HETATM 2 O O1 GOL . . . B 2 22.282 -13.794 40.159 1 95.84 ? O1 GOL 301 A 1 HETATM 3 C C2 GOL . . . B 2 22.608 -12.725 42.289 1 100.13 ? C2 GOL 301 A 1 HETATM 4 O O2 GOL . . . B 2 23.582 -12.352 43.231 1 98.46 ? O2 GOL 301 A 1 HETATM 5 C C3 GOL . . . B 2 21.61 -11.579 42.02 1 100.56 ? C3 GOL 301 A 1 HETATM 6 O O3 GOL . . . B 2 20.527 -11.756 42.884 1 100.88 ? O3 GOL 301 A 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 363 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #