data_8P4Z
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_model_server_result.job_id            ObFhkMFwliiZ5gwQOVN3dA 
_model_server_result.datetime_utc      '2024-10-19 05:27:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8p4z 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
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_entry.id    8P4Z 
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_exptl.entry_id    8P4Z 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
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_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8P4Z 
_cell.length_a            188.17 
_cell.length_b            188.17 
_cell.length_c            188.17 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 8P4Z 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        213 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 3 2' 
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loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
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loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,O 1 1 
B,G,H,I,J,K,L,M,N,P 2 1 
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_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 N N N 
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_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
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loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 166 n n 
C1 C2 GOL sing 167 n n 
C1 H11 GOL sing 168 n n 
C1 H12 GOL sing 169 n n 
O1 HO1 GOL sing 170 n n 
C2 O2 GOL sing 171 n n 
C2 C3 GOL sing 172 n n 
C2 H2 GOL sing 173 n n 
O2 HO2 GOL sing 174 n n 
C3 O3 GOL sing 175 n n 
C3 H31 GOL sing 176 n n 
C3 H32 GOL sing 177 n n 
O3 HO3 GOL sing 178 n n 
#
_atom_sites.entry_id                     8P4Z 
_atom_sites.fract_transf_matrix[1][1]    0.005314 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005314 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005314 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 WZ8 A 1 401 401 WZ8 LDC . 
D 3 GOL A 1 402 403 GOL GOL . 
E 3 GOL A 1 403 404 GOL GOL . 
F 4 PGE A 1 404 405 PGE PGE . 
G 2 WZ8 B 1 401 401 WZ8 LDC . 
H 3 GOL B 1 402 402 GOL GOL . 
I 3 GOL B 1 403 405 GOL GOL . 
J 3 GOL B 1 404 406 GOL GOL . 
K 3 GOL B 1 405 408 GOL GOL . 
L 3 GOL B 1 406 409 GOL GOL . 
M 5 1PE B 1 407 410 1PE 1PE . 
N 3 GOL B 1 408 411 GOL GOL . 
O 6 HOH A 1 501 2 HOH HOH . 
O 6 HOH A 2 502 9 HOH HOH . 
O 6 HOH A 3 503 7 HOH HOH . 
O 6 HOH A 4 504 4 HOH HOH . 
P 6 HOH B 1 501 12 HOH HOH . 
P 6 HOH B 2 502 6 HOH HOH . 
P 6 HOH B 3 503 17 HOH HOH . 
P 6 HOH B 4 504 26 HOH HOH . 
P 6 HOH B 5 505 11 HOH HOH . 
P 6 HOH B 6 506 24 HOH HOH . 
P 6 HOH B 7 507 15 HOH HOH . 
P 6 HOH B 8 508 3 HOH HOH . 
P 6 HOH B 9 509 27 HOH HOH . 
P 6 HOH B 10 510 25 HOH HOH . 
P 6 HOH B 11 511 19 HOH HOH . 
P 6 HOH B 12 512 1 HOH HOH . 
P 6 HOH B 13 513 14 HOH HOH . 
P 6 HOH B 14 514 18 HOH HOH . 
P 6 HOH B 15 515 13 HOH HOH . 
P 6 HOH B 16 516 5 HOH HOH . 
P 6 HOH B 17 517 22 HOH HOH . 
P 6 HOH B 18 518 10 HOH HOH . 
P 6 HOH B 19 519 8 HOH HOH . 
P 6 HOH B 20 520 16 HOH HOH . 
P 6 HOH B 21 521 21 HOH HOH . 
P 6 HOH B 22 522 20 HOH HOH . 
P 6 HOH B 23 523 23 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 -30.529 13.734 41.409 1 151.1 ? C1 GOL 402 A 1 
HETATM 2 O O1 GOL . . . D 3 -30.88 14.985 40.836 1 151.14 ? O1 GOL 402 A 1 
HETATM 3 C C2 GOL . . . D 3 -29.094 13.746 41.884 1 151.2 ? C2 GOL 402 A 1 
HETATM 4 O O2 GOL . . . D 3 -28.819 12.547 42.615 1 151.3 ? O2 GOL 402 A 1 
HETATM 5 C C3 GOL . . . D 3 -28.108 13.917 40.748 1 151.08 ? C3 GOL 402 A 1 
HETATM 6 O O3 GOL . . . D 3 -26.803 14.214 41.233 1 151.01 ? O3 GOL 402 A 1 
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_model_server_stats.io_time_ms              69 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
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