data_8P4Z # _model_server_result.job_id bK4rNs0E2uvE62Z9W3-bhw _model_server_result.datetime_utc '2025-03-01 00:26:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8p4z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":407}' # _entry.id 8P4Z # _exptl.entry_id 8P4Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8P4Z _cell.length_a 188.17 _cell.length_b 188.17 _cell.length_c 188.17 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8P4Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 213 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,O 1 1 B,G,H,I,J,K,L,M,N,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id M _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 8P4Z _atom_sites.fract_transf_matrix[1][1] 0.005314 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005314 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005314 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 WZ8 A 1 401 401 WZ8 LDC . D 3 GOL A 1 402 403 GOL GOL . E 3 GOL A 1 403 404 GOL GOL . F 4 PGE A 1 404 405 PGE PGE . G 2 WZ8 B 1 401 401 WZ8 LDC . H 3 GOL B 1 402 402 GOL GOL . I 3 GOL B 1 403 405 GOL GOL . J 3 GOL B 1 404 406 GOL GOL . K 3 GOL B 1 405 408 GOL GOL . L 3 GOL B 1 406 409 GOL GOL . M 5 1PE B 1 407 410 1PE 1PE . N 3 GOL B 1 408 411 GOL GOL . O 6 HOH A 1 501 2 HOH HOH . O 6 HOH A 2 502 9 HOH HOH . O 6 HOH A 3 503 7 HOH HOH . O 6 HOH A 4 504 4 HOH HOH . P 6 HOH B 1 501 12 HOH HOH . P 6 HOH B 2 502 6 HOH HOH . P 6 HOH B 3 503 17 HOH HOH . P 6 HOH B 4 504 26 HOH HOH . P 6 HOH B 5 505 11 HOH HOH . P 6 HOH B 6 506 24 HOH HOH . P 6 HOH B 7 507 15 HOH HOH . P 6 HOH B 8 508 3 HOH HOH . P 6 HOH B 9 509 27 HOH HOH . P 6 HOH B 10 510 25 HOH HOH . P 6 HOH B 11 511 19 HOH HOH . P 6 HOH B 12 512 1 HOH HOH . P 6 HOH B 13 513 14 HOH HOH . P 6 HOH B 14 514 18 HOH HOH . P 6 HOH B 15 515 13 HOH HOH . P 6 HOH B 16 516 5 HOH HOH . P 6 HOH B 17 517 22 HOH HOH . P 6 HOH B 18 518 10 HOH HOH . P 6 HOH B 19 519 8 HOH HOH . P 6 HOH B 20 520 16 HOH HOH . P 6 HOH B 21 521 21 HOH HOH . P 6 HOH B 22 522 20 HOH HOH . P 6 HOH B 23 523 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . M 5 -15.613 22.697 61.983 1 120.09 ? OH2 1PE 407 B 1 HETATM 2 C C12 1PE . . . M 5 -14.504 22.516 61.112 1 120.27 ? C12 1PE 407 B 1 HETATM 3 C C22 1PE . . . M 5 -13.197 22.758 61.806 1 120.58 ? C22 1PE 407 B 1 HETATM 4 O OH3 1PE . . . M 5 -13.203 24.054 62.403 1 120.99 ? OH3 1PE 407 B 1 HETATM 5 C C13 1PE . . . M 5 -13.388 25.214 64.531 1 120.79 ? C13 1PE 407 B 1 HETATM 6 C C23 1PE . . . M 5 -12.798 24.052 63.775 1 121.06 ? C23 1PE 407 B 1 HETATM 7 O OH4 1PE . . . M 5 -13.183 25.052 65.934 1 120.49 ? OH4 1PE 407 B 1 HETATM 8 C C14 1PE . . . M 5 -13.854 25.574 68.167 1 120.75 ? C14 1PE 407 B 1 HETATM 9 C C24 1PE . . . M 5 -14.019 25.894 66.716 1 120.49 ? C24 1PE 407 B 1 HETATM 10 O OH5 1PE . . . M 5 -13.887 24.159 68.378 1 121.01 ? OH5 1PE 407 B 1 HETATM 11 C C15 1PE . . . M 5 -14.055 23.167 70.608 1 120.37 ? C15 1PE 407 B 1 HETATM 12 C C25 1PE . . . M 5 -13.159 23.72 69.532 1 120.7 ? C25 1PE 407 B 1 HETATM 13 O OH6 1PE . . . M 5 -15.127 22.406 70.056 1 120.26 ? OH6 1PE 407 B 1 HETATM 14 C C16 1PE . . . M 5 -16.703 20.616 70.374 1 119.46 ? C16 1PE 407 B 1 HETATM 15 C C26 1PE . . . M 5 -15.921 21.723 71.03 1 119.86 ? C26 1PE 407 B 1 HETATM 16 O OH7 1PE . . . M 5 -16.04 19.357 70.475 1 119.09 ? OH7 1PE 407 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 16 #