data_8P5T # _model_server_result.job_id ZhWXT3e-8oZ4h9u7kcV7cw _model_server_result.datetime_utc '2024-10-19 07:35:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8p5t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":1302}' # _entry.id 8P5T # _exptl.entry_id 8P5T _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 809.571 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETYL COENZYME *A' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8P5T _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8P5T _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 K N N ? 3 N N N ? 3 Q N N ? 3 T N N ? 3 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 647 A ASP 645 1_555 G MG MG . A MG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc2 A OD1 ASN 680 A ASN 678 1_555 G MG MG . A MG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc3 A O ILE 682 A ILE 680 1_555 G MG MG . A MG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc4 G MG MG . A MG 1301 1_555 I O2B TPP . A TPP 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc5 G MG MG . A MG 1301 1_555 I O1A TPP . A TPP 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc6 B OD1 ASP 647 B ASP 645 1_555 J MG MG . B MG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc7 B OD1 ASN 680 B ASN 678 1_555 J MG MG . B MG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc8 B O ILE 682 B ILE 680 1_555 J MG MG . B MG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc9 J MG MG . B MG 1301 1_555 L O2A TPP . B TPP 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc10 J MG MG . B MG 1301 1_555 L O2B TPP . B TPP 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc11 C OD1 ASP 647 C ASP 645 1_555 M MG MG . C MG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc12 C OD1 ASN 680 C ASN 678 1_555 M MG MG . C MG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc13 C O ILE 682 C ILE 680 1_555 M MG MG . C MG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc14 M MG MG . C MG 1301 1_555 O O2B TPP . C TPP 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc15 M MG MG . C MG 1301 1_555 O O1A TPP . C TPP 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc16 D OD1 ASP 647 D ASP 645 1_555 P MG MG . D MG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc17 D OD1 ASN 680 D ASN 678 1_555 P MG MG . D MG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc18 D O ILE 682 D ILE 680 1_555 P MG MG . D MG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc19 P MG MG . D MG 1301 1_555 R O2A TPP . D TPP 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc20 P MG MG . D MG 1301 1_555 R O2B TPP . D TPP 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc21 E OD1 ASP 647 E ASP 645 1_555 S MG MG . E MG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc22 E OD1 ASN 680 E ASN 678 1_555 S MG MG . E MG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc23 E O ILE 682 E ILE 680 1_555 S MG MG . E MG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc24 S MG MG . E MG 1301 1_555 U O2B TPP . E TPP 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc25 S MG MG . E MG 1301 1_555 U O1A TPP . E TPP 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc26 F OD1 ASP 647 F ASP 645 1_555 V MG MG . F MG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc27 F OD1 ASN 680 F ASN 678 1_555 V MG MG . F MG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc28 F O ILE 682 F ILE 680 1_555 V MG MG . F MG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc29 V MG MG . F MG 1301 1_555 X O2B TPP . F TPP 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc30 V MG MG . F MG 1301 1_555 X O2A TPP . F TPP 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? # _chem_comp.formula 'C23 H38 N7 O17 P3 S' _chem_comp.formula_weight 809.571 _chem_comp.id ACO _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETYL COENZYME *A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A ACO sing 1 n y N1A C6A ACO doub 2 n y C2A N3A ACO doub 3 n y C2A H2A ACO sing 4 n n N3A C4A ACO sing 5 n y C4A C5A ACO doub 6 n y C4A N9A ACO sing 7 n y C5A C6A ACO sing 8 n y C5A N7A ACO sing 9 n y C6A N6A ACO sing 10 n n N6A H61A ACO sing 11 n n N6A H62A ACO sing 12 n n N7A C8A ACO doub 13 n y C8A N9A ACO sing 14 n y C8A H8A ACO sing 15 n n N9A C1B ACO sing 16 n n C1B C2B ACO sing 17 n n C1B O4B ACO sing 18 n n C1B H1B ACO sing 19 n n C2B O2B ACO sing 20 n n C2B C3B ACO sing 21 n n C2B H2B ACO sing 22 n n O2B HO2A ACO sing 23 n n C3B O3B ACO sing 24 n n C3B C4B ACO sing 25 n n C3B H3B ACO sing 26 n n O3B P3B ACO sing 27 n n P3B O7A ACO doub 28 n n P3B O8A ACO sing 29 n n P3B O9A ACO sing 30 n n O8A HOA8 ACO sing 31 n n O9A HOA9 ACO sing 32 n n C4B O4B ACO sing 33 n n C4B C5B ACO sing 34 n n C4B H4B ACO sing 35 n n C5B O5B ACO sing 36 n n C5B H51A ACO sing 37 n n C5B H52A ACO sing 38 n n O5B P1A ACO sing 39 n n P1A O1A ACO doub 40 n n P1A O2A ACO sing 41 n n P1A O3A ACO sing 42 n n O2A HOA2 ACO sing 43 n n O3A P2A ACO sing 44 n n P2A O4A ACO doub 45 n n P2A O5A ACO sing 46 n n P2A O6A ACO sing 47 n n O5A HOA5 ACO sing 48 n n O6A CCP ACO sing 49 n n CBP CCP ACO sing 50 n n CBP CDP ACO sing 51 n n CBP CEP ACO sing 52 n n CBP CAP ACO sing 53 n n CCP H121 ACO sing 54 n n CCP H122 ACO sing 55 n n CDP H131 ACO sing 56 n n CDP H132 ACO sing 57 n n CDP H133 ACO sing 58 n n CEP H141 ACO sing 59 n n CEP H142 ACO sing 60 n n CEP H143 ACO sing 61 n n CAP OAP ACO sing 62 n n CAP C9P ACO sing 63 n n CAP H10 ACO sing 64 n n OAP HO1 ACO sing 65 n n C9P O9P ACO doub 66 n n C9P N8P ACO sing 67 n n N8P C7P ACO sing 68 n n N8P HN8 ACO sing 69 n n C7P C6P ACO sing 70 n n C7P H71 ACO sing 71 n n C7P H72 ACO sing 72 n n C6P C5P ACO sing 73 n n C6P H61 ACO sing 74 n n C6P H62 ACO sing 75 n n C5P O5P ACO doub 76 n n C5P N4P ACO sing 77 n n N4P C3P ACO sing 78 n n N4P HN4 ACO sing 79 n n C3P C2P ACO sing 80 n n C3P H31 ACO sing 81 n n C3P H32 ACO sing 82 n n C2P S1P ACO sing 83 n n C2P H21 ACO sing 84 n n C2P H22 ACO sing 85 n n S1P C ACO sing 86 n n C O ACO doub 87 n n C CH3 ACO sing 88 n n CH3 HH31 ACO sing 89 n n CH3 HH32 ACO sing 90 n n CH3 HH33 ACO sing 91 n n # _atom_sites.entry_id 8P5T _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 MG A 1 1301 3 MG MG . H 3 ACO A 1 1302 1401 ACO ACO . I 4 TPP A 1 1303 1501 TPP TPP . J 2 MG B 1 1301 6 MG MG . K 3 ACO B 1 1302 1401 ACO ACO . L 4 TPP B 1 1303 1501 TPP TPP . M 2 MG C 1 1301 2 MG MG . N 3 ACO C 1 1302 1401 ACO ACO . O 4 TPP C 1 1303 1501 TPP TPP . P 2 MG D 1 1301 4 MG MG . Q 3 ACO D 1 1302 1401 ACO ACO . R 4 TPP D 1 1303 1501 TPP TPP . S 2 MG E 1 1301 1 MG MG . T 3 ACO E 1 1302 1401 ACO ACO . U 4 TPP E 1 1303 1501 TPP TPP . V 2 MG F 1 1301 5 MG MG . W 3 ACO F 1 1302 1401 ACO ACO . X 4 TPP F 1 1303 1501 TPP TPP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A ACO . . . Q 3 95.171 228.033 151.952 1 57.36 ? N1A ACO 1302 D 1 HETATM 2 C C2A ACO . . . Q 3 95.364 229.148 151.241 1 57.65 ? C2A ACO 1302 D 1 HETATM 3 N N3A ACO . . . Q 3 94.475 230.077 150.885 1 57.15 ? N3A ACO 1302 D 1 HETATM 4 C C4A ACO . . . Q 3 93.258 229.777 151.34 1 52.17 ? C4A ACO 1302 D 1 HETATM 5 C C5A ACO . . . Q 3 92.904 228.666 152.085 1 53.77 ? C5A ACO 1302 D 1 HETATM 6 C C6A ACO . . . Q 3 93.929 227.756 152.398 1 55.17 ? C6A ACO 1302 D 1 HETATM 7 N N6A ACO . . . Q 3 93.741 226.637 153.105 1 59.73 ? N6A ACO 1302 D 1 HETATM 8 N N7A ACO . . . Q 3 91.548 228.681 152.372 1 60.18 ? N7A ACO 1302 D 1 HETATM 9 C C8A ACO . . . Q 3 91.123 229.781 151.803 1 59.22 ? C8A ACO 1302 D 1 HETATM 10 N N9A ACO . . . Q 3 92.103 230.492 151.162 1 52.81 ? N9A ACO 1302 D 1 HETATM 11 C C1B ACO . . . Q 3 91.949 231.735 150.423 1 50.89 ? C1B ACO 1302 D 1 HETATM 12 C C2B ACO . . . Q 3 91.594 231.529 148.965 1 54.23 ? C2B ACO 1302 D 1 HETATM 13 O O2B ACO . . . Q 3 92.781 231.306 148.209 1 60.92 ? O2B ACO 1302 D 1 HETATM 14 C C3B ACO . . . Q 3 90.953 232.873 148.652 1 54.12 ? C3B ACO 1302 D 1 HETATM 15 O O3B ACO . . . Q 3 91.917 233.876 148.266 1 58.59 ? O3B ACO 1302 D 1 HETATM 16 P P3B ACO . . . Q 3 91.497 235.101 147.282 1 51.45 ? P3B ACO 1302 D 1 HETATM 17 O O7A ACO . . . Q 3 91.153 236.246 148.206 1 61.27 ? O7A ACO 1302 D 1 HETATM 18 O O8A ACO . . . Q 3 92.736 235.361 146.451 1 59.12 ? O8A ACO 1302 D 1 HETATM 19 O O9A ACO . . . Q 3 90.32 234.643 146.447 1 60.9 ? O9A ACO 1302 D 1 HETATM 20 C C4B ACO . . . Q 3 90.243 233.242 149.952 1 51.67 ? C4B ACO 1302 D 1 HETATM 21 O O4B ACO . . . Q 3 90.875 232.459 150.982 1 53.51 ? O4B ACO 1302 D 1 HETATM 22 C C5B ACO . . . Q 3 88.752 233.01 149.973 1 55.33 ? C5B ACO 1302 D 1 HETATM 23 O O5B ACO . . . Q 3 88.441 231.636 150.307 1 53.29 ? O5B ACO 1302 D 1 HETATM 24 P P1A ACO . . . Q 3 87.24 230.863 149.589 1 41.73 ? P1A ACO 1302 D 1 HETATM 25 O O1A ACO . . . Q 3 87.814 229.657 148.963 1 53.54 ? O1A ACO 1302 D 1 HETATM 26 O O2A ACO . . . Q 3 86.445 231.796 148.758 1 49.67 ? O2A ACO 1302 D 1 HETATM 27 O O3A ACO . . . Q 3 86.35 230.389 150.83 1 49.57 ? O3A ACO 1302 D 1 HETATM 28 P P2A ACO . . . Q 3 85.337 231.105 151.84 1 44.09 ? P2A ACO 1302 D 1 HETATM 29 O O4A ACO . . . Q 3 83.983 230.572 151.592 1 52.59 ? O4A ACO 1302 D 1 HETATM 30 O O5A ACO . . . Q 3 85.567 232.566 151.798 1 55.42 ? O5A ACO 1302 D 1 HETATM 31 O O6A ACO . . . Q 3 85.813 230.527 153.244 1 59.95 ? O6A ACO 1302 D 1 HETATM 32 C CBP ACO . . . Q 3 87.58 230.878 154.874 1 73.37 ? CBP ACO 1302 D 1 HETATM 33 C CCP ACO . . . Q 3 87.201 230.268 153.529 1 70.08 ? CCP ACO 1302 D 1 HETATM 34 C CDP ACO . . . Q 3 87.611 232.406 154.727 1 80.73 ? CDP ACO 1302 D 1 HETATM 35 C CEP ACO . . . Q 3 88.969 230.364 155.28 1 76.8 ? CEP ACO 1302 D 1 HETATM 36 C CAP ACO . . . Q 3 86.533 230.473 155.943 1 78.87 ? CAP ACO 1302 D 1 HETATM 37 O OAP ACO . . . Q 3 86.415 229.06 155.998 1 82.69 ? OAP ACO 1302 D 1 HETATM 38 C C9P ACO . . . Q 3 86.823 231.008 157.338 1 84.24 ? C9P ACO 1302 D 1 HETATM 39 O O9P ACO . . . Q 3 86.612 232.188 157.611 1 89.87 ? O9P ACO 1302 D 1 HETATM 40 N N8P ACO . . . Q 3 87.293 230.126 158.222 1 91.97 ? N8P ACO 1302 D 1 HETATM 41 C C7P ACO . . . Q 3 87.638 230.485 159.59 1 94.03 ? C7P ACO 1302 D 1 HETATM 42 C C6P ACO . . . Q 3 89.017 231.106 159.671 1 93.18 ? C6P ACO 1302 D 1 HETATM 43 C C5P ACO . . . Q 3 90.122 230.088 159.51 1 88.46 ? C5P ACO 1302 D 1 HETATM 44 O O5P ACO . . . Q 3 89.943 228.896 159.748 1 92.41 ? O5P ACO 1302 D 1 HETATM 45 N N4P ACO . . . Q 3 91.287 230.57 159.081 1 85.18 ? N4P ACO 1302 D 1 HETATM 46 C C3P ACO . . . Q 3 92.502 229.773 159.024 1 82.61 ? C3P ACO 1302 D 1 HETATM 47 C C2P ACO . . . Q 3 92.616 228.882 157.802 1 82.83 ? C2P ACO 1302 D 1 HETATM 48 S S1P ACO . . . Q 3 94.343 228.336 157.62 1 84.05 ? S1P ACO 1302 D 1 HETATM 49 C C ACO . . . Q 3 94.351 226.593 157.31 1 89.37 ? C ACO 1302 D 1 HETATM 50 O O ACO . . . Q 3 95.172 226.061 156.614 1 93.09 ? O ACO 1302 D 1 HETATM 51 C CH3 ACO . . . Q 3 93.25 225.863 158.019 1 92.54 ? CH3 ACO 1302 D 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 190 _model_server_stats.query_time_ms 585 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 51 #