data_8P5X # _model_server_result.job_id 1O2hEUNIhDrb2nvc6FTYFQ _model_server_result.datetime_utc '2024-10-20 01:29:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8p5x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":1301}' # _entry.id 8P5X # _exptl.entry_id 8P5X _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8P5X _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8P5X _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 N N N ? 4 P N N ? 4 Q N N ? 4 T N N ? 4 V N N ? 4 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 680 A ASN 678 1_555 N MG MG . A MG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc2 A O ILE 682 A ILE 680 1_555 N MG MG . A MG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc3 M O2A TPP . A TPP 1301 1_555 N MG MG . A MG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc4 M O3B TPP . A TPP 1301 1_555 N MG MG . A MG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.899 ? metalc ? metalc5 B OD1 ASN 680 B ASN 678 1_555 P MG MG . B MG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc6 B O ILE 682 B ILE 680 1_555 P MG MG . B MG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc7 O O1A TPP . B TPP 1301 1_555 P MG MG . B MG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc8 O O1B TPP . B TPP 1301 1_555 P MG MG . B MG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.862 ? metalc ? metalc9 C OD1 ASN 680 C ASN 678 1_555 Q MG MG . C MG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc10 C O ILE 682 C ILE 680 1_555 Q MG MG . C MG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc11 Q MG MG . C MG 1301 1_555 R O3B TPP . C TPP 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.882 ? metalc ? metalc12 Q MG MG . C MG 1301 1_555 R O2A TPP . C TPP 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc13 D OD1 ASN 680 D ASN 678 1_555 T MG MG . D MG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc14 D O ILE 682 D ILE 680 1_555 T MG MG . D MG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc15 S O1A TPP . D TPP 1301 1_555 T MG MG . D MG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc16 S O1B TPP . D TPP 1301 1_555 T MG MG . D MG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.855 ? metalc ? metalc17 E OD1 ASN 680 E ASN 678 1_555 V MG MG . E MG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc18 E O ILE 682 E ILE 680 1_555 V MG MG . E MG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc19 U O2A TPP . E TPP 1301 1_555 V MG MG . E MG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc20 U O3B TPP . E TPP 1301 1_555 V MG MG . E MG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.922 ? metalc ? metalc21 F OD1 ASN 680 F ASN 678 1_555 X MG MG . F MG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc22 F O ILE 682 F ILE 680 1_555 X MG MG . F MG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc23 W O1A TPP . F TPP 1301 1_555 X MG MG . F MG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc24 W O1B TPP . F TPP 1301 1_555 X MG MG . F MG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.938 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8P5X _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 3 TPP A 1 1301 1302 TPP TPP . N 4 MG A 1 1302 1303 MG MG . O 3 TPP B 1 1301 1302 TPP TPP . P 4 MG B 1 1302 1303 MG MG . Q 4 MG C 1 1301 1303 MG MG . R 3 TPP C 1 1302 1302 TPP TPP . S 3 TPP D 1 1301 1302 TPP TPP . T 4 MG D 1 1302 1303 MG MG . U 3 TPP E 1 1301 1302 TPP TPP . V 4 MG E 1 1302 1303 MG MG . W 3 TPP F 1 1301 1302 TPP TPP . X 4 MG F 1 1302 1303 MG MG . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id Q _atom_site.label_entity_id 4 _atom_site.Cartn_x 221.244 _atom_site.Cartn_y 188.831 _atom_site.Cartn_z 182.074 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 53.94 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1301 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 130 _model_server_stats.parse_time_ms 200 _model_server_stats.create_model_time_ms 68 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #