data_8P5Z # _model_server_result.job_id 1Ypnw7qXLGLiKfEvvhMIQA _model_server_result.datetime_utc '2024-12-22 01:19:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8p5z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":202}' # _entry.id 8P5Z # _exptl.entry_id 8P5Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 117.416 _cell.angle_gamma 90 _cell.entry_id 8P5Z _cell.length_a 103.95 _cell.length_b 51.892 _cell.length_c 93.367 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8P5Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E N01 X08 . A X08 201 1_555 F MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc2 E N08 X08 . A X08 201 1_555 F MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc3 H N01 X08 . B X08 201 1_555 J MN MN . B MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc4 H N08 X08 . B X08 201 1_555 J MN MN . B MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc5 K N01 X08 . C X08 201 1_555 L MN MN . C MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? metalc ? metalc6 K N08 X08 . C X08 201 1_555 L MN MN . C MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc7 O N01 X08 . D X08 201 1_555 P MN MN . D MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc8 O N08 X08 . D X08 201 1_555 P MN MN . D MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 8P5Z _atom_sites.fract_transf_matrix[1][1] 0.00962 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00499 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019271 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012066 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 X08 A 1 201 201 X08 ZX3 . F 3 MN A 1 202 1 MN MN . G 4 BR A 1 203 1 BR BR . H 2 X08 B 1 201 201 X08 ZX3 . I 5 GOL B 1 202 202 GOL GOL . J 3 MN B 1 203 2 MN MN . K 2 X08 C 1 201 201 X08 ZX3 . L 3 MN C 1 202 3 MN MN . M 4 BR C 1 203 2 BR BR . N 4 BR C 1 204 3 BR BR . O 2 X08 D 1 201 201 X08 ZX3 . P 3 MN D 1 202 4 MN MN . Q 4 BR D 1 203 4 BR BR . R 6 HOH A 1 301 28 HOH HOH . R 6 HOH A 2 302 41 HOH HOH . R 6 HOH A 3 303 176 HOH HOH . R 6 HOH A 4 304 133 HOH HOH . R 6 HOH A 5 305 166 HOH HOH . R 6 HOH A 6 306 96 HOH HOH . R 6 HOH A 7 307 6 HOH HOH . R 6 HOH A 8 308 53 HOH HOH . R 6 HOH A 9 309 31 HOH HOH . R 6 HOH A 10 310 171 HOH HOH . R 6 HOH A 11 311 13 HOH HOH . R 6 HOH A 12 312 43 HOH HOH . R 6 HOH A 13 313 4 HOH HOH . R 6 HOH A 14 314 119 HOH HOH . R 6 HOH A 15 315 93 HOH HOH . R 6 HOH A 16 316 42 HOH HOH . R 6 HOH A 17 317 37 HOH HOH . R 6 HOH A 18 318 32 HOH HOH . R 6 HOH A 19 319 95 HOH HOH . R 6 HOH A 20 320 1 HOH HOH . R 6 HOH A 21 321 180 HOH HOH . R 6 HOH A 22 322 122 HOH HOH . R 6 HOH A 23 323 85 HOH HOH . R 6 HOH A 24 324 38 HOH HOH . R 6 HOH A 25 325 36 HOH HOH . R 6 HOH A 26 326 14 HOH HOH . R 6 HOH A 27 327 84 HOH HOH . R 6 HOH A 28 328 35 HOH HOH . R 6 HOH A 29 329 141 HOH HOH . R 6 HOH A 30 330 174 HOH HOH . R 6 HOH A 31 331 5 HOH HOH . R 6 HOH A 32 332 170 HOH HOH . R 6 HOH A 33 333 188 HOH HOH . R 6 HOH A 34 334 187 HOH HOH . R 6 HOH A 35 335 50 HOH HOH . R 6 HOH A 36 336 82 HOH HOH . R 6 HOH A 37 337 177 HOH HOH . R 6 HOH A 38 338 30 HOH HOH . R 6 HOH A 39 339 126 HOH HOH . R 6 HOH A 40 340 103 HOH HOH . R 6 HOH A 41 341 46 HOH HOH . R 6 HOH A 42 342 44 HOH HOH . R 6 HOH A 43 343 175 HOH HOH . R 6 HOH A 44 344 34 HOH HOH . R 6 HOH A 45 345 146 HOH HOH . R 6 HOH A 46 346 12 HOH HOH . R 6 HOH A 47 347 29 HOH HOH . R 6 HOH A 48 348 10 HOH HOH . R 6 HOH A 49 349 104 HOH HOH . R 6 HOH A 50 350 79 HOH HOH . R 6 HOH A 51 351 194 HOH HOH . R 6 HOH A 52 352 153 HOH HOH . R 6 HOH A 53 353 179 HOH HOH . R 6 HOH A 54 354 189 HOH HOH . R 6 HOH A 55 355 156 HOH HOH . R 6 HOH A 56 356 109 HOH HOH . R 6 HOH A 57 357 214 HOH HOH . S 6 HOH B 1 301 135 HOH HOH . S 6 HOH B 2 302 201 HOH HOH . S 6 HOH B 3 303 40 HOH HOH . S 6 HOH B 4 304 198 HOH HOH . S 6 HOH B 5 305 9 HOH HOH . S 6 HOH B 6 306 158 HOH HOH . S 6 HOH B 7 307 49 HOH HOH . S 6 HOH B 8 308 51 HOH HOH . S 6 HOH B 9 309 193 HOH HOH . S 6 HOH B 10 310 98 HOH HOH . S 6 HOH B 11 311 52 HOH HOH . S 6 HOH B 12 312 23 HOH HOH . S 6 HOH B 13 313 144 HOH HOH . S 6 HOH B 14 314 58 HOH HOH . S 6 HOH B 15 315 118 HOH HOH . S 6 HOH B 16 316 94 HOH HOH . S 6 HOH B 17 317 102 HOH HOH . S 6 HOH B 18 318 47 HOH HOH . S 6 HOH B 19 319 97 HOH HOH . S 6 HOH B 20 320 186 HOH HOH . S 6 HOH B 21 321 7 HOH HOH . S 6 HOH B 22 322 91 HOH HOH . S 6 HOH B 23 323 200 HOH HOH . S 6 HOH B 24 324 45 HOH HOH . S 6 HOH B 25 325 48 HOH HOH . S 6 HOH B 26 326 39 HOH HOH . S 6 HOH B 27 327 101 HOH HOH . S 6 HOH B 28 328 61 HOH HOH . S 6 HOH B 29 329 15 HOH HOH . S 6 HOH B 30 330 92 HOH HOH . S 6 HOH B 31 331 150 HOH HOH . S 6 HOH B 32 332 145 HOH HOH . S 6 HOH B 33 333 162 HOH HOH . S 6 HOH B 34 334 172 HOH HOH . S 6 HOH B 35 335 142 HOH HOH . S 6 HOH B 36 336 130 HOH HOH . S 6 HOH B 37 337 99 HOH HOH . S 6 HOH B 38 338 199 HOH HOH . S 6 HOH B 39 339 90 HOH HOH . S 6 HOH B 40 340 197 HOH HOH . S 6 HOH B 41 341 8 HOH HOH . S 6 HOH B 42 342 212 HOH HOH . S 6 HOH B 43 343 190 HOH HOH . S 6 HOH B 44 344 57 HOH HOH . S 6 HOH B 45 345 163 HOH HOH . S 6 HOH B 46 346 155 HOH HOH . S 6 HOH B 47 347 195 HOH HOH . T 6 HOH C 1 301 192 HOH HOH . T 6 HOH C 2 302 128 HOH HOH . T 6 HOH C 3 303 65 HOH HOH . T 6 HOH C 4 304 16 HOH HOH . T 6 HOH C 5 305 125 HOH HOH . T 6 HOH C 6 306 169 HOH HOH . T 6 HOH C 7 307 136 HOH HOH . T 6 HOH C 8 308 114 HOH HOH . T 6 HOH C 9 309 107 HOH HOH . T 6 HOH C 10 310 139 HOH HOH . T 6 HOH C 11 311 112 HOH HOH . T 6 HOH C 12 312 178 HOH HOH . T 6 HOH C 13 313 164 HOH HOH . T 6 HOH C 14 314 18 HOH HOH . T 6 HOH C 15 315 21 HOH HOH . T 6 HOH C 16 316 3 HOH HOH . T 6 HOH C 17 317 203 HOH HOH . T 6 HOH C 18 318 143 HOH HOH . T 6 HOH C 19 319 148 HOH HOH . T 6 HOH C 20 320 160 HOH HOH . T 6 HOH C 21 321 64 HOH HOH . T 6 HOH C 22 322 22 HOH HOH . T 6 HOH C 23 323 68 HOH HOH . T 6 HOH C 24 324 181 HOH HOH . T 6 HOH C 25 325 120 HOH HOH . T 6 HOH C 26 326 67 HOH HOH . T 6 HOH C 27 327 183 HOH HOH . T 6 HOH C 28 328 66 HOH HOH . T 6 HOH C 29 329 59 HOH HOH . T 6 HOH C 30 330 69 HOH HOH . T 6 HOH C 31 331 159 HOH HOH . T 6 HOH C 32 332 129 HOH HOH . T 6 HOH C 33 333 80 HOH HOH . T 6 HOH C 34 334 165 HOH HOH . T 6 HOH C 35 335 147 HOH HOH . T 6 HOH C 36 336 27 HOH HOH . T 6 HOH C 37 337 127 HOH HOH . T 6 HOH C 38 338 149 HOH HOH . T 6 HOH C 39 339 116 HOH HOH . T 6 HOH C 40 340 137 HOH HOH . T 6 HOH C 41 341 151 HOH HOH . T 6 HOH C 42 342 202 HOH HOH . T 6 HOH C 43 343 117 HOH HOH . T 6 HOH C 44 344 121 HOH HOH . T 6 HOH C 45 345 72 HOH HOH . T 6 HOH C 46 346 184 HOH HOH . T 6 HOH C 47 347 208 HOH HOH . T 6 HOH C 48 348 173 HOH HOH . T 6 HOH C 49 349 26 HOH HOH . T 6 HOH C 50 350 204 HOH HOH . T 6 HOH C 51 351 161 HOH HOH . U 6 HOH D 1 301 78 HOH HOH . U 6 HOH D 2 302 213 HOH HOH . U 6 HOH D 3 303 25 HOH HOH . U 6 HOH D 4 304 2 HOH HOH . U 6 HOH D 5 305 63 HOH HOH . U 6 HOH D 6 306 88 HOH HOH . U 6 HOH D 7 307 71 HOH HOH . U 6 HOH D 8 308 56 HOH HOH . U 6 HOH D 9 309 77 HOH HOH . U 6 HOH D 10 310 17 HOH HOH . U 6 HOH D 11 311 154 HOH HOH . U 6 HOH D 12 312 111 HOH HOH . U 6 HOH D 13 313 157 HOH HOH . U 6 HOH D 14 314 131 HOH HOH . U 6 HOH D 15 315 89 HOH HOH . U 6 HOH D 16 316 55 HOH HOH . U 6 HOH D 17 317 74 HOH HOH . U 6 HOH D 18 318 152 HOH HOH . U 6 HOH D 19 319 182 HOH HOH . U 6 HOH D 20 320 83 HOH HOH . U 6 HOH D 21 321 105 HOH HOH . U 6 HOH D 22 322 113 HOH HOH . U 6 HOH D 23 323 138 HOH HOH . U 6 HOH D 24 324 54 HOH HOH . U 6 HOH D 25 325 19 HOH HOH . U 6 HOH D 26 326 209 HOH HOH . U 6 HOH D 27 327 86 HOH HOH . U 6 HOH D 28 328 106 HOH HOH . U 6 HOH D 29 329 20 HOH HOH . U 6 HOH D 30 330 134 HOH HOH . U 6 HOH D 31 331 167 HOH HOH . U 6 HOH D 32 332 73 HOH HOH . U 6 HOH D 33 333 123 HOH HOH . U 6 HOH D 34 334 115 HOH HOH . U 6 HOH D 35 335 124 HOH HOH . U 6 HOH D 36 336 62 HOH HOH . U 6 HOH D 37 337 81 HOH HOH . U 6 HOH D 38 338 100 HOH HOH . U 6 HOH D 39 339 185 HOH HOH . U 6 HOH D 40 340 24 HOH HOH . U 6 HOH D 41 341 60 HOH HOH . U 6 HOH D 42 342 210 HOH HOH . U 6 HOH D 43 343 196 HOH HOH . U 6 HOH D 44 344 76 HOH HOH . U 6 HOH D 45 345 110 HOH HOH . U 6 HOH D 46 346 70 HOH HOH . U 6 HOH D 47 347 140 HOH HOH . U 6 HOH D 48 348 87 HOH HOH . U 6 HOH D 49 349 11 HOH HOH . U 6 HOH D 50 350 132 HOH HOH . U 6 HOH D 51 351 75 HOH HOH . U 6 HOH D 52 352 191 HOH HOH . U 6 HOH D 53 353 211 HOH HOH . U 6 HOH D 54 354 33 HOH HOH . U 6 HOH D 55 355 108 HOH HOH . U 6 HOH D 56 356 168 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 5 -8.373 9.341 14.299 1 31.49 ? C1 GOL 202 B 1 HETATM 2 O O1 GOL . . . I 5 -9.51 9.783 13.598 1 53.37 ? O1 GOL 202 B 1 HETATM 3 C C2 GOL . . . I 5 -7.566 8.389 13.416 1 50.26 ? C2 GOL 202 B 1 HETATM 4 O O2 GOL . . . I 5 -6.202 8.821 13.423 1 50.9 ? O2 GOL 202 B 1 HETATM 5 C C3 GOL . . . I 5 -7.733 6.91 13.77 1 48.99 ? C3 GOL 202 B 1 HETATM 6 O O3 GOL . . . I 5 -7.124 6.214 12.676 1 56.95 ? O3 GOL 202 B 1 HETATM 7 H H11 GOL . . . I 5 -8.619 8.877 15.115 1 37.82 ? H11 GOL 202 B 1 HETATM 8 H H12 GOL . . . I 5 -7.806 10.084 14.557 1 37.82 ? H12 GOL 202 B 1 HETATM 9 H HO1 GOL . . . I 5 -10.049 9.126 13.53 1 64.08 ? HO1 GOL 202 B 1 HETATM 10 H H2 GOL . . . I 5 -7.952 8.453 12.529 1 60.34 ? H2 GOL 202 B 1 HETATM 11 H HO2 GOL . . . I 5 -5.999 9.009 14.23 1 61.11 ? HO2 GOL 202 B 1 HETATM 12 H H31 GOL . . . I 5 -8.673 6.691 13.869 1 58.82 ? H31 GOL 202 B 1 HETATM 13 H H32 GOL . . . I 5 -7.301 6.715 14.617 1 58.82 ? H32 GOL 202 B 1 HETATM 14 H HO3 GOL . . . I 5 -6.685 6.767 12.202 1 68.37 ? HO3 GOL 202 B 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 73 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 1237 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 14 #