data_8P65
#
_model_server_result.job_id            dzP4WstyvT7OFKVA6swm4g 
_model_server_result.datetime_utc      '2024-10-10 09:33:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8p65 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Y","auth_seq_id":301}' 
#
_entry.id    8P65 
#
_exptl.entry_id    8P65 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              618.503 
_entity.id                          13 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'HEME C' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    22-meric 
_pdbx_struct_assembly.oligomeric_count      22 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 13 Y N N 
? 13 CA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 H SG CYS 24 H CYS 24 1_555 H SG CYS 30 H CYS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
disulf ? disulf3 H SG CYS 40 H CYS 40 1_555 H SG CYS 54 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 S SG CYS 24 U CYS 24 1_555 S SG CYS 68 U CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf5 S SG CYS 40 U CYS 40 1_555 S SG CYS 54 U CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
metalc ? metalc1 C NE2 HIS 97 C HIS 97 1_555 X FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.724 ? 
metalc ? metalc2 C NE2 HIS 182 C HIS 182 1_555 W FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
metalc ? metalc3 C NE2 HIS 196 C HIS 196 1_555 X FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? 
metalc ? metalc4 D NE2 HIS 41 D HIS 41 1_555 Y FE HEC . D HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? 
metalc ? metalc5 E SG CYS 139 E CYS 139 1_555 Z FE1 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc6 E ND1 HIS 141 E HIS 141 1_555 Z FE2 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? 
metalc ? metalc7 E SG CYS 158 E CYS 158 1_555 Z FE1 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc8 E ND1 HIS 161 E HIS 161 1_555 Z FE2 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? 
metalc ? metalc9 N NE2 HIS 97 P HIS 97 1_555 BA FE HEM . P HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? 
metalc ? metalc10 N NE2 HIS 182 P HIS 182 1_555 AA FE HEM . P HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
metalc ? metalc11 N NE2 HIS 196 P HIS 196 1_555 BA FE HEM . P HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? 
metalc ? metalc12 O NE2 HIS 41 Q HIS 41 1_555 CA FE HEC . Q HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? 
metalc ? metalc13 P SG CYS 139 R CYS 139 1_555 DA FE1 FES . R FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc14 P SG CYS 144 R CYS 144 1_555 DA FE2 FES . R FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc15 P SG CYS 160 R CYS 160 1_555 DA FE2 FES . R FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? 
metalc ? metalc16 P NE2 HIS 161 R HIS 161 1_555 DA FE1 FES . R FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? 
#
_chem_comp.formula           'C34 H34 Fe N4 O4' 
_chem_comp.formula_weight    618.503 
_chem_comp.id                HEC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'HEME C' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE NA HEC sing 133 n n 
FE NB HEC sing 134 n n 
FE NC HEC sing 135 n n 
FE ND HEC sing 136 n n 
CHA C1A HEC doub 137 n n 
CHA C4D HEC sing 138 n n 
CHA HHA HEC sing 139 n n 
CHB C4A HEC doub 140 n n 
CHB C1B HEC sing 141 n n 
CHB HHB HEC sing 142 n n 
CHC C4B HEC doub 143 n n 
CHC C1C HEC sing 144 n n 
CHC HHC HEC sing 145 n n 
CHD C4C HEC doub 146 n n 
CHD C1D HEC sing 147 n n 
CHD HHD HEC sing 148 n n 
NA C1A HEC sing 149 n y 
NA C4A HEC sing 150 n y 
C1A C2A HEC sing 151 n y 
C2A C3A HEC doub 152 n y 
C2A CAA HEC sing 153 n n 
C3A C4A HEC sing 154 n y 
C3A CMA HEC sing 155 n n 
CMA HMA1 HEC sing 156 n n 
CMA HMA2 HEC sing 157 n n 
CMA HMA3 HEC sing 158 n n 
CAA CBA HEC sing 159 n n 
CAA HAA1 HEC sing 160 n n 
CAA HAA2 HEC sing 161 n n 
CBA CGA HEC sing 162 n n 
CBA HBA1 HEC sing 163 n n 
CBA HBA2 HEC sing 164 n n 
CGA O1A HEC doub 165 n n 
CGA O2A HEC sing 166 n n 
O2A H2A HEC sing 167 n n 
NB C1B HEC sing 168 n y 
NB C4B HEC sing 169 n y 
C1B C2B HEC doub 170 n y 
C2B C3B HEC sing 171 n y 
C2B CMB HEC sing 172 n n 
C3B C4B HEC sing 173 n y 
C3B CAB HEC doub 174 e n 
CMB HMB1 HEC sing 175 n n 
CMB HMB2 HEC sing 176 n n 
CMB HMB3 HEC sing 177 n n 
CAB CBB HEC sing 178 n n 
CAB HAB HEC sing 179 n n 
CBB HBB1 HEC sing 180 n n 
CBB HBB2 HEC sing 181 n n 
CBB HBB3 HEC sing 182 n n 
NC C1C HEC sing 183 n y 
NC C4C HEC sing 184 n y 
C1C C2C HEC doub 185 n y 
C2C C3C HEC sing 186 n y 
C2C CMC HEC sing 187 n n 
C3C C4C HEC sing 188 n y 
C3C CAC HEC doub 189 e n 
CMC HMC1 HEC sing 190 n n 
CMC HMC2 HEC sing 191 n n 
CMC HMC3 HEC sing 192 n n 
CAC CBC HEC sing 193 n n 
CAC HAC HEC sing 194 n n 
CBC HBC1 HEC sing 195 n n 
CBC HBC2 HEC sing 196 n n 
CBC HBC3 HEC sing 197 n n 
ND C1D HEC sing 198 n y 
ND C4D HEC sing 199 n y 
C1D C2D HEC doub 200 n y 
C2D C3D HEC sing 201 n y 
C2D CMD HEC sing 202 n n 
C3D C4D HEC doub 203 n y 
C3D CAD HEC sing 204 n n 
CMD HMD1 HEC sing 205 n n 
CMD HMD2 HEC sing 206 n n 
CMD HMD3 HEC sing 207 n n 
CAD CBD HEC sing 208 n n 
CAD HAD1 HEC sing 209 n n 
CAD HAD2 HEC sing 210 n n 
CBD CGD HEC sing 211 n n 
CBD HBD1 HEC sing 212 n n 
CBD HBD2 HEC sing 213 n n 
CGD O1D HEC doub 214 n n 
CGD O2D HEC sing 215 n n 
O2D H2D HEC sing 216 n n 
#
_atom_sites.entry_id                     8P65 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
W 12 HEM C 1 401 1 HEM HEM . 
X 12 HEM C 1 402 2 HEM HEM . 
Y 13 HEC D 1 301 1 HEC HEC . 
Z 14 FES E 1 201 1 FES FES . 
AA 12 HEM P 1 401 1 HEM HEM . 
BA 12 HEM P 1 402 2 HEM HEM . 
CA 13 HEC Q 1 301 1 HEC HEC . 
DA 14 FES R 1 201 1 FES FES . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE HEC . . . Y 13 234.908 240.712 159.828 1 96.03 ? FE HEC 301 D 1 
HETATM 2 C CHA HEC . . . Y 13 237.058 238.883 161.727 1 68.85 ? CHA HEC 301 D 1 
HETATM 3 C CHB HEC . . . Y 13 234.288 242.76 162.561 1 65.59 ? CHB HEC 301 D 1 
HETATM 4 C CHC HEC . . . Y 13 233.18 242.882 157.837 1 71.47 ? CHC HEC 301 D 1 
HETATM 5 C CHD HEC . . . Y 13 235.439 238.674 157.111 1 71.45 ? CHD HEC 301 D 1 
HETATM 6 N NA HEC . . . Y 13 235.545 240.814 161.782 1 72.37 ? NA HEC 301 D 1 
HETATM 7 C C1A HEC . . . Y 13 236.438 239.936 162.356 1 72.92 ? C1A HEC 301 D 1 
HETATM 8 C C2A HEC . . . Y 13 236.613 240.315 163.741 1 68.89 ? C2A HEC 301 D 1 
HETATM 9 C C3A HEC . . . Y 13 235.85 241.381 163.98 1 64.35 ? C3A HEC 301 D 1 
HETATM 10 C C4A HEC . . . Y 13 235.169 241.723 162.75 1 69.71 ? C4A HEC 301 D 1 
HETATM 11 C CMA HEC . . . Y 13 235.715 242.124 165.325 1 66.79 ? CMA HEC 301 D 1 
HETATM 12 C CAA HEC . . . Y 13 237.512 239.582 164.756 1 66.9 ? CAA HEC 301 D 1 
HETATM 13 C CBA HEC . . . Y 13 238.808 240.335 165.014 1 68.6 ? CBA HEC 301 D 1 
HETATM 14 C CGA HEC . . . Y 13 239.553 239.599 166.093 1 74.75 ? CGA HEC 301 D 1 
HETATM 15 O O1A HEC . . . Y 13 239.072 238.519 166.518 1 72.52 ? O1A HEC 301 D 1 
HETATM 16 O O2A HEC . . . Y 13 240.623 240.091 166.531 1 80.47 ? O2A HEC 301 D 1 
HETATM 17 N NB HEC . . . Y 13 233.945 242.475 160.144 1 62.87 ? NB HEC 301 D 1 
HETATM 18 C C1B HEC . . . Y 13 233.777 243.141 161.343 1 63.52 ? C1B HEC 301 D 1 
HETATM 19 C C2B HEC . . . Y 13 232.97 244.314 161.101 1 62.87 ? C2B HEC 301 D 1 
HETATM 20 C C3B HEC . . . Y 13 232.665 244.339 159.801 1 66.7 ? C3B HEC 301 D 1 
HETATM 21 C C4B HEC . . . Y 13 233.273 243.191 159.174 1 71.45 ? C4B HEC 301 D 1 
HETATM 22 C CMB HEC . . . Y 13 232.549 245.324 162.187 1 73.62 ? CMB HEC 301 D 1 
HETATM 23 C CAB HEC . . . Y 13 231.835 245.39 159.039 1 65.11 ? CAB HEC 301 D 1 
HETATM 24 C CBB HEC . . . Y 13 232.618 246.713 158.963 1 69.88 ? CBB HEC 301 D 1 
HETATM 25 N NC HEC . . . Y 13 234.389 240.757 157.848 1 74.15 ? NC HEC 301 D 1 
HETATM 26 C C1C HEC . . . Y 13 233.698 241.77 157.221 1 66.94 ? C1C HEC 301 D 1 
HETATM 27 C C2C HEC . . . Y 13 233.737 241.53 155.794 1 71.24 ? C2C HEC 301 D 1 
HETATM 28 C C3C HEC . . . Y 13 234.232 240.304 155.611 1 67.97 ? C3C HEC 301 D 1 
HETATM 29 C C4C HEC . . . Y 13 234.736 239.834 156.884 1 72.1 ? C4C HEC 301 D 1 
HETATM 30 C CMC HEC . . . Y 13 232.922 242.332 154.758 1 77.66 ? CMC HEC 301 D 1 
HETATM 31 C CAC HEC . . . Y 13 234.401 239.579 154.259 1 69.71 ? CAC HEC 301 D 1 
HETATM 32 C CBC HEC . . . Y 13 235.486 240.283 153.418 1 79.03 ? CBC HEC 301 D 1 
HETATM 33 N ND HEC . . . Y 13 236.033 239.022 159.479 1 78.76 ? ND HEC 301 D 1 
HETATM 34 C C1D HEC . . . Y 13 236.166 238.391 158.245 1 72.28 ? C1D HEC 301 D 1 
HETATM 35 C C2D HEC . . . Y 13 237.196 237.384 158.342 1 72.28 ? C2D HEC 301 D 1 
HETATM 36 C C3D HEC . . . Y 13 237.695 237.456 159.79 1 72.55 ? C3D HEC 301 D 1 
HETATM 37 C C4D HEC . . . Y 13 236.92 238.498 160.414 1 69.98 ? C4D HEC 301 D 1 
HETATM 38 C CMD HEC . . . Y 13 237.677 236.441 157.222 1 74.22 ? CMD HEC 301 D 1 
HETATM 39 C CAD HEC . . . Y 13 238.794 236.611 160.463 1 70.36 ? CAD HEC 301 D 1 
HETATM 40 C CBD HEC . . . Y 13 240.146 237.267 160.221 1 68.16 ? CBD HEC 301 D 1 
HETATM 41 C CGD HEC . . . Y 13 241.208 236.469 160.924 1 77.2 ? CGD HEC 301 D 1 
HETATM 42 O O1D HEC . . . Y 13 240.857 235.689 161.844 1 76.21 ? O1D HEC 301 D 1 
HETATM 43 O O2D HEC . . . Y 13 242.405 236.616 160.569 1 78.04 ? O2D HEC 301 D 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    39 
_model_server_stats.query_time_ms           265 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           43 
#