data_8P65
#
_model_server_result.job_id            EdMHeQ6946Wz7FTFD-Q8Og 
_model_server_result.datetime_utc      '2024-10-10 09:23:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8p65 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"BA","auth_seq_id":402}' 
#
_entry.id    8P65 
#
_exptl.entry_id    8P65 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          12 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    22-meric 
_pdbx_struct_assembly.oligomeric_count      22 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 12 W N N 
? 12 X N N 
? 12 AA N N 
? 12 BA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 H SG CYS 24 H CYS 24 1_555 H SG CYS 30 H CYS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
disulf ? disulf3 H SG CYS 40 H CYS 40 1_555 H SG CYS 54 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 S SG CYS 24 U CYS 24 1_555 S SG CYS 68 U CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf5 S SG CYS 40 U CYS 40 1_555 S SG CYS 54 U CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
metalc ? metalc1 C NE2 HIS 97 C HIS 97 1_555 X FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.724 ? 
metalc ? metalc2 C NE2 HIS 182 C HIS 182 1_555 W FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
metalc ? metalc3 C NE2 HIS 196 C HIS 196 1_555 X FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? 
metalc ? metalc4 D NE2 HIS 41 D HIS 41 1_555 Y FE HEC . D HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? 
metalc ? metalc5 E SG CYS 139 E CYS 139 1_555 Z FE1 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc6 E ND1 HIS 141 E HIS 141 1_555 Z FE2 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? 
metalc ? metalc7 E SG CYS 158 E CYS 158 1_555 Z FE1 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc8 E ND1 HIS 161 E HIS 161 1_555 Z FE2 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? 
metalc ? metalc9 N NE2 HIS 97 P HIS 97 1_555 BA FE HEM . P HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? 
metalc ? metalc10 N NE2 HIS 182 P HIS 182 1_555 AA FE HEM . P HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
metalc ? metalc11 N NE2 HIS 196 P HIS 196 1_555 BA FE HEM . P HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? 
metalc ? metalc12 O NE2 HIS 41 Q HIS 41 1_555 CA FE HEC . Q HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? 
metalc ? metalc13 P SG CYS 139 R CYS 139 1_555 DA FE1 FES . R FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc14 P SG CYS 144 R CYS 144 1_555 DA FE2 FES . R FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc15 P SG CYS 160 R CYS 160 1_555 DA FE2 FES . R FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? 
metalc ? metalc16 P NE2 HIS 161 R HIS 161 1_555 DA FE1 FES . R FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 217 n n 
CHA C4D HEM doub 218 n n 
CHA HHA HEM sing 219 n n 
CHB C4A HEM sing 220 n n 
CHB C1B HEM doub 221 n n 
CHB HHB HEM sing 222 n n 
CHC C4B HEM sing 223 n n 
CHC C1C HEM doub 224 n n 
CHC HHC HEM sing 225 n n 
CHD C4C HEM doub 226 n n 
CHD C1D HEM sing 227 n n 
CHD HHD HEM sing 228 n n 
C1A C2A HEM doub 229 n y 
C1A NA HEM sing 230 n y 
C2A C3A HEM sing 231 n y 
C2A CAA HEM sing 232 n n 
C3A C4A HEM doub 233 n y 
C3A CMA HEM sing 234 n n 
C4A NA HEM sing 235 n y 
CMA HMA HEM sing 236 n n 
CMA HMAA HEM sing 237 n n 
CMA HMAB HEM sing 238 n n 
CAA CBA HEM sing 239 n n 
CAA HAA HEM sing 240 n n 
CAA HAAA HEM sing 241 n n 
CBA CGA HEM sing 242 n n 
CBA HBA HEM sing 243 n n 
CBA HBAA HEM sing 244 n n 
CGA O1A HEM doub 245 n n 
CGA O2A HEM sing 246 n n 
C1B C2B HEM sing 247 n n 
C1B NB HEM sing 248 n n 
C2B C3B HEM doub 249 n n 
C2B CMB HEM sing 250 n n 
C3B C4B HEM sing 251 n n 
C3B CAB HEM sing 252 n n 
C4B NB HEM doub 253 n n 
CMB HMB HEM sing 254 n n 
CMB HMBA HEM sing 255 n n 
CMB HMBB HEM sing 256 n n 
CAB CBB HEM doub 257 n n 
CAB HAB HEM sing 258 n n 
CBB HBB HEM sing 259 n n 
CBB HBBA HEM sing 260 n n 
C1C C2C HEM sing 261 n y 
C1C NC HEM sing 262 n y 
C2C C3C HEM doub 263 n y 
C2C CMC HEM sing 264 n n 
C3C C4C HEM sing 265 n y 
C3C CAC HEM sing 266 n n 
C4C NC HEM sing 267 n y 
CMC HMC HEM sing 268 n n 
CMC HMCA HEM sing 269 n n 
CMC HMCB HEM sing 270 n n 
CAC CBC HEM doub 271 n n 
CAC HAC HEM sing 272 n n 
CBC HBC HEM sing 273 n n 
CBC HBCA HEM sing 274 n n 
C1D C2D HEM sing 275 n n 
C1D ND HEM doub 276 n n 
C2D C3D HEM doub 277 n n 
C2D CMD HEM sing 278 n n 
C3D C4D HEM sing 279 n n 
C3D CAD HEM sing 280 n n 
C4D ND HEM sing 281 n n 
CMD HMD HEM sing 282 n n 
CMD HMDA HEM sing 283 n n 
CMD HMDB HEM sing 284 n n 
CAD CBD HEM sing 285 n n 
CAD HAD HEM sing 286 n n 
CAD HADA HEM sing 287 n n 
CBD CGD HEM sing 288 n n 
CBD HBD HEM sing 289 n n 
CBD HBDA HEM sing 290 n n 
CGD O1D HEM doub 291 n n 
CGD O2D HEM sing 292 n n 
O2A H2A HEM sing 293 n n 
O2D H2D HEM sing 294 n n 
FE NA HEM sing 295 n n 
FE NB HEM sing 296 n n 
FE NC HEM sing 297 n n 
FE ND HEM sing 298 n n 
#
_atom_sites.entry_id                     8P65 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
W 12 HEM C 1 401 1 HEM HEM . 
X 12 HEM C 1 402 2 HEM HEM . 
Y 13 HEC D 1 301 1 HEC HEC . 
Z 14 FES E 1 201 1 FES FES . 
AA 12 HEM P 1 401 1 HEM HEM . 
BA 12 HEM P 1 402 2 HEM HEM . 
CA 13 HEC Q 1 301 1 HEC HEC . 
DA 14 FES R 1 201 1 FES FES . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . BA 12 206.785 208.986 212.674 1 57.07 ? CHA HEM 402 P 1 
HETATM 2 C CHB HEM . . . BA 12 209.714 209.509 208.853 1 55.07 ? CHB HEM 402 P 1 
HETATM 3 C CHC HEM . . . BA 12 205.974 210.957 206.179 1 62.1 ? CHC HEM 402 P 1 
HETATM 4 C CHD HEM . . . BA 12 203.179 210.954 210.137 1 61.4 ? CHD HEM 402 P 1 
HETATM 5 C C1A HEM . . . BA 12 207.851 208.87 211.817 1 63.04 ? C1A HEM 402 P 1 
HETATM 6 C C2A HEM . . . BA 12 209.032 208.071 212.046 1 66.24 ? C2A HEM 402 P 1 
HETATM 7 C C3A HEM . . . BA 12 209.835 208.218 210.994 1 64.87 ? C3A HEM 402 P 1 
HETATM 8 C C4A HEM . . . BA 12 209.196 209.113 210.061 1 62.47 ? C4A HEM 402 P 1 
HETATM 9 C CMA HEM . . . BA 12 211.213 207.565 210.784 1 64.04 ? CMA HEM 402 P 1 
HETATM 10 C CAA HEM . . . BA 12 209.298 207.206 213.294 1 64.7 ? CAA HEM 402 P 1 
HETATM 11 C CBA HEM . . . BA 12 209.144 205.745 212.895 1 62.96 ? CBA HEM 402 P 1 
HETATM 12 C CGA HEM . . . BA 12 208.03 205.125 213.685 1 70.54 ? CGA HEM 402 P 1 
HETATM 13 O O1A HEM . . . BA 12 207.474 204.102 213.215 1 75.83 ? O1A HEM 402 P 1 
HETATM 14 O O2A HEM . . . BA 12 207.694 205.663 214.769 1 72.16 ? O2A HEM 402 P 1 
HETATM 15 C C1B HEM . . . BA 12 208.965 209.932 207.785 1 54.94 ? C1B HEM 402 P 1 
HETATM 16 C C2B HEM . . . BA 12 209.453 210.169 206.445 1 59.69 ? C2B HEM 402 P 1 
HETATM 17 C C3B HEM . . . BA 12 208.413 210.574 205.695 1 62.55 ? C3B HEM 402 P 1 
HETATM 18 C C4B HEM . . . BA 12 207.246 210.6 206.553 1 65.73 ? C4B HEM 402 P 1 
HETATM 19 C CMB HEM . . . BA 12 210.93 209.964 206.041 1 62.99 ? CMB HEM 402 P 1 
HETATM 20 C CAB HEM . . . BA 12 208.35 210.963 204.196 1 60.14 ? CAB HEM 402 P 1 
HETATM 21 C CBB HEM . . . BA 12 209.398 210.975 203.365 1 59.48 ? CBB HEM 402 P 1 
HETATM 22 C C1C HEM . . . BA 12 204.873 210.957 207.002 1 63.16 ? C1C HEM 402 P 1 
HETATM 23 C C2C HEM . . . BA 12 203.499 210.96 206.568 1 68.52 ? C2C HEM 402 P 1 
HETATM 24 C C3C HEM . . . BA 12 202.712 210.959 207.641 1 66.69 ? C3C HEM 402 P 1 
HETATM 25 C C4C HEM . . . BA 12 203.565 210.957 208.816 1 67.7 ? C4C HEM 402 P 1 
HETATM 26 C CMC HEM . . . BA 12 203.021 210.961 205.105 1 67.04 ? CMC HEM 402 P 1 
HETATM 27 C CAC HEM . . . BA 12 201.172 210.962 207.563 1 56.21 ? CAC HEM 402 P 1 
HETATM 28 C CBC HEM . . . BA 12 200.4 211.023 208.645 1 60.94 ? CBC HEM 402 P 1 
HETATM 29 C C1D HEM . . . BA 12 203.872 210.348 211.159 1 67.32 ? C1D HEM 402 P 1 
HETATM 30 C C2D HEM . . . BA 12 203.339 209.938 212.439 1 64.14 ? C2D HEM 402 P 1 
HETATM 31 C C3D HEM . . . BA 12 204.318 209.386 213.152 1 60.9 ? C3D HEM 402 P 1 
HETATM 32 C C4D HEM . . . BA 12 205.528 209.436 212.345 1 62.33 ? C4D HEM 402 P 1 
HETATM 33 C CMD HEM . . . BA 12 201.88 210.101 212.908 1 62.33 ? CMD HEM 402 P 1 
HETATM 34 C CAD HEM . . . BA 12 204.115 208.838 214.586 1 59.36 ? CAD HEM 402 P 1 
HETATM 35 C CBD HEM . . . BA 12 204.892 207.556 214.87 1 63.82 ? CBD HEM 402 P 1 
HETATM 36 C CGD HEM . . . BA 12 204.456 206.983 216.191 1 60.4 ? CGD HEM 402 P 1 
HETATM 37 O O1D HEM . . . BA 12 203.321 207.29 216.63 1 69.97 ? O1D HEM 402 P 1 
HETATM 38 O O2D HEM . . . BA 12 205.24 206.213 216.8 1 66.42 ? O2D HEM 402 P 1 
HETATM 39 N NA HEM . . . BA 12 207.981 209.495 210.593 1 69.28 ? NA HEM 402 P 1 
HETATM 40 N NB HEM . . . BA 12 207.617 210.204 207.818 1 62.04 ? NB HEM 402 P 1 
HETATM 41 N NC HEM . . . BA 12 204.877 210.954 208.383 1 71.75 ? NC HEM 402 P 1 
HETATM 42 N ND HEM . . . BA 12 205.213 210.027 211.137 1 73.76 ? ND HEM 402 P 1 
HETATM 43 FE FE HEM . . . BA 12 206.45 210.279 209.504 1 89.31 ? FE HEM 402 P 1 
#
_model_server_stats.io_time_ms              68 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    39 
_model_server_stats.query_time_ms           261 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#