data_8P81 # _model_server_result.job_id xQbMkiQcQwAMBgUsGLMyxg _model_server_result.datetime_utc '2024-11-26 20:36:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8p81 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1101}' # _entry.id 8P81 # _exptl.entry_id 8P81 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 499.356 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description ~{N}-[[5,6-bis(chloranyl)-1~{H}-benzimidazol-2-yl]methyl]-9-(1-methylpyrazol-4-yl)-2-morpholin-4-yl-purin-6-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8P81 _cell.length_a 103.042 _cell.length_b 137.906 _cell.length_c 58.471 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8P81 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 180 A TYR 892 1_555 A N TPO 181 A TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C TPO 181 A TPO 893 1_555 A N ASN 182 A ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C21 H20 Cl2 N10 O' _chem_comp.formula_weight 499.356 _chem_comp.id RMF _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[[5,6-bis(chloranyl)-1~{H}-benzimidazol-2-yl]methyl]-9-(1-methylpyrazol-4-yl)-2-morpholin-4-yl-purin-6-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N7 C8 RMF doub 277 n y N7 N8 RMF sing 278 n y C10 N8 RMF sing 279 n n C8 C7 RMF sing 280 n y N8 C9 RMF sing 281 n y C7 C9 RMF doub 282 n y C7 N5 RMF sing 283 n n C6 N5 RMF sing 284 n y C6 N4 RMF doub 285 n y N5 C4 RMF sing 286 n y N4 C5 RMF sing 287 n y C4 C5 RMF doub 288 n y C4 N3 RMF sing 289 n y C5 C2 RMF sing 290 n y N3 C3 RMF doub 291 n y C2 N1 RMF sing 292 n n C2 N2 RMF doub 293 n y C3 N2 RMF sing 294 n y C3 N6 RMF sing 295 n n N1 C1 RMF sing 296 n n C14 N6 RMF sing 297 n n C14 C13 RMF sing 298 n n N6 C11 RMF sing 299 n n C1 C15 RMF sing 300 n n C13 O1 RMF sing 301 n n C11 C12 RMF sing 302 n n C15 N10 RMF doub 303 n y C15 N9 RMF sing 304 n y O1 C12 RMF sing 305 n n N10 C17 RMF sing 306 n y N9 C16 RMF sing 307 n y C17 C16 RMF doub 308 n y C17 C21 RMF sing 309 n y C16 C18 RMF sing 310 n y C21 C20 RMF doub 311 n y C18 C19 RMF doub 312 n y C20 C19 RMF sing 313 n y C20 CL2 RMF sing 314 n n C19 CL1 RMF sing 315 n n C6 H61 RMF sing 316 n n C8 H81 RMF sing 317 n n C10 H103 RMF sing 318 n n C10 H101 RMF sing 319 n n C10 H102 RMF sing 320 n n C1 H11 RMF sing 321 n n C1 H12 RMF sing 322 n n C9 H92 RMF sing 323 n n C11 H112 RMF sing 324 n n C11 H111 RMF sing 325 n n C12 H122 RMF sing 326 n n C12 H121 RMF sing 327 n n C13 H132 RMF sing 328 n n C13 H131 RMF sing 329 n n C14 H141 RMF sing 330 n n C14 H142 RMF sing 331 n n C18 H181 RMF sing 332 n n C21 H211 RMF sing 333 n n N1 H13 RMF sing 334 n n N9 H91 RMF sing 335 n n # _atom_sites.entry_id 8P81 _atom_sites.fract_transf_matrix[1][1] 0.009705 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007251 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017102 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 RMF A 1 1101 1101 RMF LIG . D 4 HOH A 1 1201 26 HOH HOH . D 4 HOH A 2 1202 22 HOH HOH . D 4 HOH A 3 1203 23 HOH HOH . D 4 HOH A 4 1204 39 HOH HOH . D 4 HOH A 5 1205 9 HOH HOH . D 4 HOH A 6 1206 1 HOH HOH . D 4 HOH A 7 1207 31 HOH HOH . D 4 HOH A 8 1208 30 HOH HOH . D 4 HOH A 9 1209 38 HOH HOH . D 4 HOH A 10 1210 43 HOH HOH . E 4 HOH B 1 301 40 HOH HOH . E 4 HOH B 2 302 2 HOH HOH . E 4 HOH B 3 303 4 HOH HOH . E 4 HOH B 4 304 12 HOH HOH . E 4 HOH B 5 305 15 HOH HOH . E 4 HOH B 6 306 11 HOH HOH . E 4 HOH B 7 307 24 HOH HOH . E 4 HOH B 8 308 36 HOH HOH . E 4 HOH B 9 309 41 HOH HOH . E 4 HOH B 10 310 28 HOH HOH . E 4 HOH B 11 311 29 HOH HOH . E 4 HOH B 12 312 37 HOH HOH . E 4 HOH B 13 313 42 HOH HOH . E 4 HOH B 14 314 35 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 RMF . . . C 3 13.928 24.998 18.167 0 51.7 ? C4 RMF 1101 A 1 HETATM 2 C C5 RMF . . . C 3 12.94 25.12 17.239 1 40.82 ? C5 RMF 1101 A 1 HETATM 3 C C6 RMF . . . C 3 14.814 25.787 16.324 1 42.75 ? C6 RMF 1101 A 1 HETATM 4 C C7 RMF . . . C 3 16.388 25.446 18.227 1 47.07 ? C7 RMF 1101 A 1 HETATM 5 C C8 RMF . . . C 3 17.604 25.862 17.671 1 56.05 ? C8 RMF 1101 A 1 HETATM 6 C C10 RMF . . . C 3 18.677 24.944 20.93 1 56.89 ? C10 RMF 1101 A 1 HETATM 7 C C1 RMF . . . C 3 9.41 24.013 16.671 0 61.46 ? C1 RMF 1101 A 1 HETATM 8 C C2 RMF . . . C 3 11.633 24.743 17.615 0 55.03 ? C2 RMF 1101 A 1 HETATM 9 C C3 RMF . . . C 3 12.392 24.186 19.712 1 59.8 ? C3 RMF 1101 A 1 HETATM 10 C C9 RMF . . . C 3 16.693 25.052 19.537 1 53.4 ? C9 RMF 1101 A 1 HETATM 11 O O1 RMF . . . C 3 11.766 22.342 23.588 1 70.98 ? O1 RMF 1101 A 1 HETATM 12 C C11 RMF . . . C 3 13.233 23.375 21.956 1 60.96 ? C11 RMF 1101 A 1 HETATM 13 C C12 RMF . . . C 3 12.796 23.251 23.415 1 66.13 ? C12 RMF 1101 A 1 HETATM 14 C C13 RMF . . . C 3 10.682 22.595 22.761 1 57.58 ? C13 RMF 1101 A 1 HETATM 15 C C14 RMF . . . C 3 11.075 22.688 21.288 1 47.95 ? C14 RMF 1101 A 1 HETATM 16 C C15 RMF . . . C 3 8.472 24.549 17.755 1 50.75 ? C15 RMF 1101 A 1 HETATM 17 C C16 RMF . . . C 3 7.143 25.886 18.872 1 64.03 ? C16 RMF 1101 A 1 HETATM 18 C C17 RMF . . . C 3 7.28 24.727 19.573 1 66.69 ? C17 RMF 1101 A 1 HETATM 19 C C18 RMF . . . C 3 6.322 26.933 19.374 1 60.79 ? C18 RMF 1101 A 1 HETATM 20 C C19 RMF . . . C 3 5.659 26.775 20.585 1 61.66 ? C19 RMF 1101 A 1 HETATM 21 C C20 RMF . . . C 3 5.797 25.591 21.305 1 70.74 ? C20 RMF 1101 A 1 HETATM 22 C C21 RMF . . . C 3 6.601 24.565 20.812 1 71.63 ? C21 RMF 1101 A 1 HETATM 23 N N1 RMF . . . C 3 10.583 24.876 16.611 1 52.77 ? N1 RMF 1101 A 1 HETATM 24 N N10 RMF . . . C 3 8.109 23.913 18.873 1 62.04 ? N10 RMF 1101 A 1 HETATM 25 N N2 RMF . . . C 3 11.4 24.286 18.845 1 48.46 ? N2 RMF 1101 A 1 HETATM 26 N N3 RMF . . . C 3 13.628 24.523 19.407 1 55.62 ? N3 RMF 1101 A 1 HETATM 27 N N4 RMF . . . C 3 13.505 25.609 16.105 1 55.73 ? N4 RMF 1101 A 1 HETATM 28 N N5 RMF . . . C 3 15.082 25.418 17.585 1 39.65 ? N5 RMF 1101 A 1 HETATM 29 N N6 RMF . . . C 3 12.122 23.684 21.054 1 60.35 ? N6 RMF 1101 A 1 HETATM 30 N N7 RMF . . . C 3 18.544 25.719 18.601 1 68.67 ? N7 RMF 1101 A 1 HETATM 31 N N8 RMF . . . C 3 17.974 25.235 19.703 1 56.67 ? N8 RMF 1101 A 1 HETATM 32 N N9 RMF . . . C 3 7.896 25.758 17.744 1 53.94 ? N9 RMF 1101 A 1 HETATM 33 CL CL1 RMF . . . C 3 4.631 28.096 21.211 1 114.42 ? CL1 RMF 1101 A 1 HETATM 34 CL CL2 RMF . . . C 3 4.944 25.388 22.862 1 86.02 ? CL2 RMF 1101 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 34 #