data_8P90
#
_model_server_result.job_id            fAKydSY1CrZVRIKuqG7fDA 
_model_server_result.datetime_utc      '2024-11-13 05:17:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8p90 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":602}' 
#
_entry.id    8P90 
#
_exptl.entry_id    8P90 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              392.572 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(3ALPHA,5BETA,12ALPHA)-3,12-DIHYDROXYCHOLAN-24-OIC ACID' 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8P90 
_cell.length_a            94.657 
_cell.length_b            94.657 
_cell.length_c            441.848 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8P90 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    'P 65 2 (x,y,z+1/12)' 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 L N N 
? 4 M N N 
? 4 Q N N 
? 4 R N N 
? 4 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 185 A HIS 185 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
metalc ? metalc2 A ND1 HIS 187 A HIS 187 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? 
metalc ? metalc3 A OD2 ASP 189 A ASP 189 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.78 ? 
metalc ? metalc4 A NE2 HIS 190 A HIS 190 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? 
metalc ? metalc5 A NE2 HIS 253 A HIS 253 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
metalc ? metalc6 A OD2 ASP 284 A ASP 284 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? 
metalc ? metalc7 A OD2 ASP 284 A ASP 284 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? 
metalc ? metalc8 A NE2 HIS 343 A HIS 343 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc9 C ZN ZN . A ZN 401 1_555 E O12 3PE . A 3PE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? 
metalc ? metalc10 D ZN ZN . A ZN 402 1_555 E O14 3PE . A 3PE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? 
metalc ? metalc11 B NE2 HIS 185 B HIS 185 1_555 N ZN ZN . B ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? 
metalc ? metalc12 B ND1 HIS 187 B HIS 187 1_555 N ZN ZN . B ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? 
metalc ? metalc13 B OD2 ASP 189 B ASP 189 1_555 O ZN ZN . B ZN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc14 B NE2 HIS 190 B HIS 190 1_555 O ZN ZN . B ZN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? 
metalc ? metalc15 B NE2 HIS 253 B HIS 253 1_555 N ZN ZN . B ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? 
metalc ? metalc16 B OD2 ASP 284 B ASP 284 1_555 O ZN ZN . B ZN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? 
metalc ? metalc17 B NE2 HIS 343 B HIS 343 1_555 O ZN ZN . B ZN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? 
metalc ? metalc18 N ZN ZN . B ZN 603 1_555 P O12 3PE . B 3PE 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? 
metalc ? metalc19 O ZN ZN . B ZN 604 1_555 P O14 3PE . B 3PE 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? 
#
_chem_comp.formula           'C24 H40 O4' 
_chem_comp.formula_weight    392.572 
_chem_comp.id                DXC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(3ALPHA,5BETA,12ALPHA)-3,12-DIHYDROXYCHOLAN-24-OIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'DEOXYCHOLIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 DXC sing 215 n n 
C1 C6 DXC sing 216 n n 
C1 O2 DXC sing 217 n n 
C1 H1 DXC sing 218 n n 
C2 C3 DXC sing 219 n n 
C2 H22 DXC sing 220 n n 
C2 H21 DXC sing 221 n n 
C3 C4 DXC sing 222 n n 
C3 C7 DXC sing 223 n n 
C3 H3 DXC sing 224 n n 
C4 C5 DXC sing 225 n n 
C4 C10 DXC sing 226 n n 
C4 C18 DXC sing 227 n n 
C5 C6 DXC sing 228 n n 
C5 H52 DXC sing 229 n n 
C5 H51 DXC sing 230 n n 
C6 H62 DXC sing 231 n n 
C6 H61 DXC sing 232 n n 
C7 C8 DXC sing 233 n n 
C7 H72 DXC sing 234 n n 
C7 H71 DXC sing 235 n n 
C8 C9 DXC sing 236 n n 
C8 H82 DXC sing 237 n n 
C8 H81 DXC sing 238 n n 
C9 C10 DXC sing 239 n n 
C9 C11 DXC sing 240 n n 
C9 H9 DXC sing 241 n n 
C10 C14 DXC sing 242 n n 
C10 H10 DXC sing 243 n n 
C11 C12 DXC sing 244 n n 
C11 C15 DXC sing 245 n n 
C11 H11 DXC sing 246 n n 
C12 C13 DXC sing 247 n n 
C12 C17 DXC sing 248 n n 
C12 C20 DXC sing 249 n n 
C13 C14 DXC sing 250 n n 
C13 O1 DXC sing 251 n n 
C13 H13 DXC sing 252 n n 
C14 H142 DXC sing 253 n n 
C14 H141 DXC sing 254 n n 
C15 C16 DXC sing 255 n n 
C15 H152 DXC sing 256 n n 
C15 H151 DXC sing 257 n n 
C16 C17 DXC sing 258 n n 
C16 H162 DXC sing 259 n n 
C16 H161 DXC sing 260 n n 
C17 C19 DXC sing 261 n n 
C17 H17 DXC sing 262 n n 
C18 H183 DXC sing 263 n n 
C18 H182 DXC sing 264 n n 
C18 H181 DXC sing 265 n n 
C19 C21 DXC sing 266 n n 
C19 C24 DXC sing 267 n n 
C19 H19 DXC sing 268 n n 
O1 H1O1 DXC sing 269 n n 
O2 H2 DXC sing 270 n n 
C20 H203 DXC sing 271 n n 
C20 H202 DXC sing 272 n n 
C20 H201 DXC sing 273 n n 
C21 C22 DXC sing 274 n n 
C21 H212 DXC sing 275 n n 
C21 H211 DXC sing 276 n n 
C22 C23 DXC sing 277 n n 
C22 H222 DXC sing 278 n n 
C22 H221 DXC sing 279 n n 
C23 O3 DXC doub 280 n n 
C23 O4 DXC sing 281 n n 
O4 HO4 DXC sing 282 n n 
C24 H243 DXC sing 283 n n 
C24 H242 DXC sing 284 n n 
C24 H241 DXC sing 285 n n 
#
_atom_sites.entry_id                     8P90 
_atom_sites.fract_transf_matrix[1][1]    0.010564 
_atom_sites.fract_transf_matrix[1][2]    0.006099 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012199 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002263 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 401 401 ZN ZN . 
D 2 ZN A 1 402 402 ZN ZN . 
E 3 3PE A 1 403 503 3PE 3PE . 
F 4 DXC A 1 404 602 DXC DXC . 
G 4 DXC A 1 405 603 DXC DXC . 
H 4 DXC A 1 406 605 DXC DXC . 
I 4 DXC A 1 407 601 DXC DXC . 
J 4 DXC A 1 408 604 DXC DXC . 
K 5 PLP A 1 409 100 PLP PLP . 
L 4 DXC B 1 601 601 DXC DXC . 
M 4 DXC B 1 602 604 DXC DXC . 
N 2 ZN B 1 603 401 ZN ZN . 
O 2 ZN B 1 604 402 ZN ZN . 
P 3 3PE B 1 605 503 3PE 3PE . 
Q 4 DXC B 1 606 602 DXC DXC . 
R 4 DXC B 1 607 603 DXC DXC . 
S 4 DXC B 1 608 605 DXC DXC . 
T 6 HOH A 1 501 21 HOH HOH . 
T 6 HOH A 2 502 17 HOH HOH . 
T 6 HOH A 3 503 11 HOH HOH . 
T 6 HOH A 4 504 1 HOH HOH . 
T 6 HOH A 5 505 16 HOH HOH . 
T 6 HOH A 6 506 27 HOH HOH . 
T 6 HOH A 7 507 2 HOH HOH . 
T 6 HOH A 8 508 7 HOH HOH . 
T 6 HOH A 9 509 24 HOH HOH . 
T 6 HOH A 10 510 12 HOH HOH . 
T 6 HOH A 11 511 3 HOH HOH . 
T 6 HOH A 12 512 10 HOH HOH . 
T 6 HOH A 13 513 6 HOH HOH . 
U 6 HOH B 1 701 23 HOH HOH . 
U 6 HOH B 2 702 13 HOH HOH . 
U 6 HOH B 3 703 22 HOH HOH . 
U 6 HOH B 4 704 15 HOH HOH . 
U 6 HOH B 5 705 26 HOH HOH . 
U 6 HOH B 6 706 29 HOH HOH . 
U 6 HOH B 7 707 4 HOH HOH . 
U 6 HOH B 8 708 5 HOH HOH . 
U 6 HOH B 9 709 14 HOH HOH . 
U 6 HOH B 10 710 18 HOH HOH . 
U 6 HOH B 11 711 20 HOH HOH . 
U 6 HOH B 12 712 28 HOH HOH . 
U 6 HOH B 13 713 9 HOH HOH . 
U 6 HOH B 14 714 19 HOH HOH . 
U 6 HOH B 15 715 30 HOH HOH . 
U 6 HOH B 16 716 25 HOH HOH . 
U 6 HOH B 17 717 8 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 DXC . . . M 4 -0.302 3.052 179.266 0.5 94.87 ? C1 DXC 602 B 1 
HETATM 2 C C2 DXC . . . M 4 -0.834 2.8 180.66 0.5 93.96 ? C2 DXC 602 B 1 
HETATM 3 C C3 DXC . . . M 4 -0.41 3.944 181.584 0.5 97.83 ? C3 DXC 602 B 1 
HETATM 4 C C4 DXC . . . M 4 1.127 4.031 181.702 0.5 98.24 ? C4 DXC 602 B 1 
HETATM 5 C C5 DXC . . . M 4 1.671 4.216 180.275 0.5 94.71 ? C5 DXC 602 B 1 
HETATM 6 C C6 DXC . . . M 4 1.214 3.153 179.293 0.5 95.35 ? C6 DXC 602 B 1 
HETATM 7 C C7 DXC . . . M 4 -1.077 3.812 182.948 0.5 95.73 ? C7 DXC 602 B 1 
HETATM 8 C C8 DXC . . . M 4 -0.609 2.546 183.642 0.5 95.34 ? C8 DXC 602 B 1 
HETATM 9 C C9 DXC . . . M 4 0.914 2.437 183.716 0.5 95.73 ? C9 DXC 602 B 1 
HETATM 10 C C10 DXC . . . M 4 1.637 2.73 182.388 0.5 96.8 ? C10 DXC 602 B 1 
HETATM 11 C C11 DXC . . . M 4 1.357 1.049 184.119 0.5 97.15 ? C11 DXC 602 B 1 
HETATM 12 C C12 DXC . . . M 4 2.806 1.089 184.631 0.5 93.45 ? C12 DXC 602 B 1 
HETATM 13 C C13 DXC . . . M 4 3.68 1.444 183.417 0.5 92.3 ? C13 DXC 602 B 1 
HETATM 14 C C14 DXC . . . M 4 3.155 2.648 182.608 0.5 92.02 ? C14 DXC 602 B 1 
HETATM 15 C C15 DXC . . . M 4 0.537 0.336 185.179 0.5 95.13 ? C15 DXC 602 B 1 
HETATM 16 C C16 DXC . . . M 4 1.533 -0.554 185.922 0.5 96.04 ? C16 DXC 602 B 1 
HETATM 17 C C17 DXC . . . M 4 2.924 -0.327 185.261 0.5 95.52 ? C17 DXC 602 B 1 
HETATM 18 C C18 DXC . . . M 4 1.496 5.306 182.467 0.5 97.29 ? C18 DXC 602 B 1 
HETATM 19 C C19 DXC . . . M 4 4.07 -0.709 186.212 0.5 96.52 ? C19 DXC 602 B 1 
HETATM 20 O O1 DXC . . . M 4 3.785 0.279 182.626 0.5 93.67 ? O1 DXC 602 B 1 
HETATM 21 O O2 DXC . . . M 4 -0.782 2.01 178.442 0.5 100.01 ? O2 DXC 602 B 1 
HETATM 22 C C20 DXC . . . M 4 3.063 2.142 185.712 0.5 95.84 ? C20 DXC 602 B 1 
HETATM 23 C C21 DXC . . . M 4 3.648 -1.974 186.972 0.5 95.74 ? C21 DXC 602 B 1 
HETATM 24 C C22 DXC . . . M 4 3.613 -3.259 186.15 0.5 96.55 ? C22 DXC 602 B 1 
HETATM 25 C C23 DXC . . . M 4 2.508 -4.265 186.551 0.5 98.39 ? C23 DXC 602 B 1 
HETATM 26 O O3 DXC . . . M 4 1.602 -3.858 187.309 0.5 99.45 ? O3 DXC 602 B 1 
HETATM 27 O O4 DXC . . . M 4 2.603 -5.424 186.084 0.5 96.69 ? O4 DXC 602 B 1 
HETATM 28 C C24 DXC . . . M 4 5.4 -0.932 185.502 0.5 93 ? C24 DXC 602 B 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           28 
#