data_8P96
#
_model_server_result.job_id            t9zODxsxXJ8VCJyOI9wQNw 
_model_server_result.datetime_utc      '2024-11-13 08:19:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8p96 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":610}' 
#
_entry.id    8P96 
#
_exptl.entry_id    8P96 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              368.36 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'naphthalene-1,3,7-trisulfonic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8P96 
_cell.length_a            94.349 
_cell.length_b            94.349 
_cell.length_c            444.751 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8P96 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    'P 65 2 (x,y,z+1/12)' 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             S 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 185 A HIS 185 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc2 A ND1 HIS 187 A HIS 187 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc3 A OD2 ASP 189 A ASP 189 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? 
metalc ? metalc4 A NE2 HIS 190 A HIS 190 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc5 A NE2 HIS 253 A HIS 253 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc6 A OD2 ASP 284 A ASP 284 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? 
metalc ? metalc7 A OD2 ASP 284 A ASP 284 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc8 A NE2 HIS 343 A HIS 343 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc9 C ZN ZN . A ZN 401 1_555 E O12 3PE . A 3PE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? 
metalc ? metalc10 D ZN ZN . A ZN 402 1_555 E O14 3PE . A 3PE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
metalc ? metalc11 B NE2 HIS 185 B HIS 185 1_555 L ZN ZN . B ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc12 B ND1 HIS 187 B HIS 187 1_555 L ZN ZN . B ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc13 B OD2 ASP 189 B ASP 189 1_555 M ZN ZN . B ZN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc14 B NE2 HIS 190 B HIS 190 1_555 M ZN ZN . B ZN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc15 B NE2 HIS 253 B HIS 253 1_555 L ZN ZN . B ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc16 B OD2 ASP 284 B ASP 284 1_555 L ZN ZN . B ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? 
metalc ? metalc17 B OD2 ASP 284 B ASP 284 1_555 M ZN ZN . B ZN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
metalc ? metalc18 B NE2 HIS 343 B HIS 343 1_555 M ZN ZN . B ZN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc19 L ZN ZN . B ZN 603 1_555 N O12 3PE . B 3PE 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? 
metalc ? metalc20 M ZN ZN . B ZN 604 1_555 N O14 3PE . B 3PE 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
#
_chem_comp.formula           'C10 H8 O9 S3' 
_chem_comp.formula_weight    368.36 
_chem_comp.id                XBE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'naphthalene-1,3,7-trisulfonic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O12 S11 XBE doub 579 n n 
O14 S11 XBE doub 580 n n 
S11 C09 XBE sing 581 n n 
S11 O13 XBE sing 582 n n 
O16 S15 XBE doub 583 n n 
C09 C08 XBE doub 584 n y 
C09 C10 XBE sing 585 n y 
O17 S15 XBE doub 586 n n 
C08 C07 XBE sing 587 n y 
C10 C05 XBE doub 588 n y 
S15 C04 XBE sing 589 n n 
S15 O18 XBE sing 590 n n 
C07 C06 XBE doub 591 n y 
C05 C06 XBE sing 592 n y 
C05 C04 XBE sing 593 n y 
C06 C01 XBE sing 594 n y 
C04 C03 XBE doub 595 n y 
O22 S19 XBE doub 596 n n 
C01 C02 XBE doub 597 n y 
C03 C02 XBE sing 598 n y 
C02 S19 XBE sing 599 n n 
S19 O21 XBE doub 600 n n 
S19 O20 XBE sing 601 n n 
C10 H1 XBE sing 602 n n 
C01 H2 XBE sing 603 n n 
C03 H3 XBE sing 604 n n 
C07 H4 XBE sing 605 n n 
C08 H5 XBE sing 606 n n 
O13 H6 XBE sing 607 n n 
O18 H7 XBE sing 608 n n 
O20 H8 XBE sing 609 n n 
#
_atom_sites.entry_id                     8P96 
_atom_sites.fract_transf_matrix[1][1]    0.010599 
_atom_sites.fract_transf_matrix[1][2]    0.006119 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012239 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002248 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 401 401 ZN ZN . 
D 2 ZN A 1 402 402 ZN ZN . 
E 3 3PE A 1 403 503 3PE 3PE . 
F 4 DXC A 1 404 602 DXC DXC . 
G 4 DXC A 1 405 603 DXC DXC . 
H 4 DXC A 1 406 605 DXC DXC . 
I 4 DXC A 1 407 604 DXC DXC . 
J 4 DXC B 1 601 601 DXC DXC . 
K 4 DXC B 1 602 604 DXC DXC . 
L 2 ZN B 1 603 401 ZN ZN . 
M 2 ZN B 1 604 402 ZN ZN . 
N 3 3PE B 1 605 503 3PE 3PE . 
O 4 DXC B 1 606 601 DXC DXC . 
P 4 DXC B 1 607 602 DXC DXC . 
Q 4 DXC B 1 608 603 DXC DXC . 
R 4 DXC B 1 609 605 DXC DXC . 
S 5 XBE B 1 610 100 XBE N3S . 
T 6 HOH A 1 501 5 HOH HOH . 
T 6 HOH A 2 502 37 HOH HOH . 
T 6 HOH A 3 503 41 HOH HOH . 
T 6 HOH A 4 504 50 HOH HOH . 
T 6 HOH A 5 505 46 HOH HOH . 
T 6 HOH A 6 506 34 HOH HOH . 
T 6 HOH A 7 507 25 HOH HOH . 
T 6 HOH A 8 508 28 HOH HOH . 
T 6 HOH A 9 509 35 HOH HOH . 
T 6 HOH A 10 510 17 HOH HOH . 
T 6 HOH A 11 511 24 HOH HOH . 
T 6 HOH A 12 512 45 HOH HOH . 
T 6 HOH A 13 513 2 HOH HOH . 
T 6 HOH A 14 514 10 HOH HOH . 
T 6 HOH A 15 515 26 HOH HOH . 
T 6 HOH A 16 516 16 HOH HOH . 
T 6 HOH A 17 517 6 HOH HOH . 
T 6 HOH A 18 518 29 HOH HOH . 
T 6 HOH A 19 519 11 HOH HOH . 
T 6 HOH A 20 520 44 HOH HOH . 
U 6 HOH B 1 701 31 HOH HOH . 
U 6 HOH B 2 702 4 HOH HOH . 
U 6 HOH B 3 703 3 HOH HOH . 
U 6 HOH B 4 704 47 HOH HOH . 
U 6 HOH B 5 705 23 HOH HOH . 
U 6 HOH B 6 706 13 HOH HOH . 
U 6 HOH B 7 707 18 HOH HOH . 
U 6 HOH B 8 708 8 HOH HOH . 
U 6 HOH B 9 709 21 HOH HOH . 
U 6 HOH B 10 710 36 HOH HOH . 
U 6 HOH B 11 711 33 HOH HOH . 
U 6 HOH B 12 712 40 HOH HOH . 
U 6 HOH B 13 713 1 HOH HOH . 
U 6 HOH B 14 714 27 HOH HOH . 
U 6 HOH B 15 715 20 HOH HOH . 
U 6 HOH B 16 716 42 HOH HOH . 
U 6 HOH B 17 717 12 HOH HOH . 
U 6 HOH B 18 718 15 HOH HOH . 
U 6 HOH B 19 719 38 HOH HOH . 
U 6 HOH B 20 720 9 HOH HOH . 
U 6 HOH B 21 721 39 HOH HOH . 
U 6 HOH B 22 722 48 HOH HOH . 
U 6 HOH B 23 723 7 HOH HOH . 
U 6 HOH B 24 724 32 HOH HOH . 
U 6 HOH B 25 725 43 HOH HOH . 
U 6 HOH B 26 726 22 HOH HOH . 
U 6 HOH B 27 727 14 HOH HOH . 
U 6 HOH B 28 728 19 HOH HOH . 
U 6 HOH B 29 729 30 HOH HOH . 
U 6 HOH B 30 730 49 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 XBE . . . S 5 -4.154 25.902 188.865 1 110.13 ? C10 XBE 610 B 1 
HETATM 2 C C01 XBE . . . S 5 -7.382 27.159 190.146 1 116.51 ? C01 XBE 610 B 1 
HETATM 3 C C02 XBE . . . S 5 -8.042 25.966 190.404 1 115 ? C02 XBE 610 B 1 
HETATM 4 C C03 XBE . . . S 5 -7.422 24.754 190.151 1 114.59 ? C03 XBE 610 B 1 
HETATM 5 C C04 XBE . . . S 5 -6.136 24.719 189.646 1 119.28 ? C04 XBE 610 B 1 
HETATM 6 C C05 XBE . . . S 5 -5.457 25.923 189.38 1 116.02 ? C05 XBE 610 B 1 
HETATM 7 C C06 XBE . . . S 5 -6.071 27.128 189.629 1 116.09 ? C06 XBE 610 B 1 
HETATM 8 C C07 XBE . . . S 5 -5.389 28.332 189.363 1 113.18 ? C07 XBE 610 B 1 
HETATM 9 C C08 XBE . . . S 5 -4.097 28.304 188.852 1 110.82 ? C08 XBE 610 B 1 
HETATM 10 C C09 XBE . . . S 5 -3.483 27.081 188.602 1 110.32 ? C09 XBE 610 B 1 
HETATM 11 O O12 XBE . . . S 5 -1.714 25.984 186.812 1 108.4 ? O12 XBE 610 B 1 
HETATM 12 O O13 XBE . . . S 5 -0.835 26.612 189.031 1 119.08 -1 O13 XBE 610 B 1 
HETATM 13 O O14 XBE . . . S 5 -1.393 28.269 187.245 1 102.87 ? O14 XBE 610 B 1 
HETATM 14 O O16 XBE . . . S 5 -4.306 23.063 188.31 1 119.1 ? O16 XBE 610 B 1 
HETATM 15 O O17 XBE . . . S 5 -6.449 22.242 188.656 1 104.15 ? O17 XBE 610 B 1 
HETATM 16 O O18 XBE . . . S 5 -4.942 22.462 190.642 1 117.91 -1 O18 XBE 610 B 1 
HETATM 17 O O20 XBE . . . S 5 -9.871 26.942 192.192 1 108.51 -1 O20 XBE 610 B 1 
HETATM 18 O O21 XBE . . . S 5 -10.066 24.549 191.54 1 104.56 ? O21 XBE 610 B 1 
HETATM 19 O O22 XBE . . . S 5 -10.751 26.156 189.982 1 94.54 ? O22 XBE 610 B 1 
HETATM 20 S S11 XBE . . . S 5 -1.797 26.988 187.935 1 128.31 ? S11 XBE 610 B 1 
HETATM 21 S S15 XBE . . . S 5 -5.406 23.084 189.345 1 151.6 ? S15 XBE 610 B 1 
HETATM 22 S S19 XBE . . . S 5 -9.726 25.942 191.071 1 117.09 ? S19 XBE 610 B 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           22 
#