data_8P9C # _model_server_result.job_id vbU2Zpq95M64h0ePIkljRw _model_server_result.datetime_utc '2024-10-19 00:50:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8p9c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":302}' # _entry.id 8P9C # _exptl.entry_id 8P9C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.26 _cell.angle_gamma 90 _cell.entry_id 8P9C _cell.length_a 84.024 _cell.length_b 60.312 _cell.length_c 53.576 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8P9C _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 74.481295 0 52.7193 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 70 n n C1 C2 EDO sing 71 n n C1 H11 EDO sing 72 n n C1 H12 EDO sing 73 n n O1 HO1 EDO sing 74 n n C2 O2 EDO sing 75 n n C2 H21 EDO sing 76 n n C2 H22 EDO sing 77 n n O2 HO2 EDO sing 78 n n # _atom_sites.entry_id 8P9C _atom_sites.fract_transf_matrix[1][1] 0.011901 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002153 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01658 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018968 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 EDO C 1 301 301 EDO EDO . E 4 EDO C 1 302 302 EDO EDO . F 4 EDO C 1 303 303 EDO EDO . G 4 EDO C 1 304 304 EDO EDO . H 5 HOH A 1 501 110 HOH HOH . H 5 HOH A 2 502 159 HOH HOH . H 5 HOH A 3 503 30 HOH HOH . H 5 HOH A 4 504 57 HOH HOH . H 5 HOH A 5 505 21 HOH HOH . H 5 HOH A 6 506 75 HOH HOH . H 5 HOH A 7 507 63 HOH HOH . H 5 HOH A 8 508 152 HOH HOH . H 5 HOH A 9 509 41 HOH HOH . H 5 HOH A 10 510 157 HOH HOH . H 5 HOH A 11 511 72 HOH HOH . H 5 HOH A 12 512 92 HOH HOH . H 5 HOH A 13 513 89 HOH HOH . H 5 HOH A 14 514 58 HOH HOH . H 5 HOH A 15 515 139 HOH HOH . H 5 HOH A 16 516 105 HOH HOH . H 5 HOH A 17 517 53 HOH HOH . H 5 HOH A 18 518 20 HOH HOH . H 5 HOH A 19 519 161 HOH HOH . H 5 HOH A 20 520 183 HOH HOH . H 5 HOH A 21 521 154 HOH HOH . H 5 HOH A 22 522 18 HOH HOH . H 5 HOH A 23 523 33 HOH HOH . H 5 HOH A 24 524 2 HOH HOH . H 5 HOH A 25 525 186 HOH HOH . H 5 HOH A 26 526 23 HOH HOH . H 5 HOH A 27 527 47 HOH HOH . H 5 HOH A 28 528 135 HOH HOH . H 5 HOH A 29 529 165 HOH HOH . H 5 HOH A 30 530 19 HOH HOH . H 5 HOH A 31 531 74 HOH HOH . H 5 HOH A 32 532 153 HOH HOH . H 5 HOH A 33 533 52 HOH HOH . H 5 HOH A 34 534 22 HOH HOH . H 5 HOH A 35 535 91 HOH HOH . H 5 HOH A 36 536 70 HOH HOH . H 5 HOH A 37 537 149 HOH HOH . H 5 HOH A 38 538 73 HOH HOH . H 5 HOH A 39 539 142 HOH HOH . I 5 HOH B 1 401 76 HOH HOH . I 5 HOH B 2 402 87 HOH HOH . I 5 HOH B 3 403 171 HOH HOH . I 5 HOH B 4 404 185 HOH HOH . I 5 HOH B 5 405 116 HOH HOH . I 5 HOH B 6 406 119 HOH HOH . I 5 HOH B 7 407 36 HOH HOH . I 5 HOH B 8 408 13 HOH HOH . I 5 HOH B 9 409 163 HOH HOH . I 5 HOH B 10 410 32 HOH HOH . I 5 HOH B 11 411 10 HOH HOH . I 5 HOH B 12 412 16 HOH HOH . I 5 HOH B 13 413 155 HOH HOH . I 5 HOH B 14 414 156 HOH HOH . I 5 HOH B 15 415 60 HOH HOH . I 5 HOH B 16 416 54 HOH HOH . I 5 HOH B 17 417 64 HOH HOH . I 5 HOH B 18 418 5 HOH HOH . I 5 HOH B 19 419 172 HOH HOH . I 5 HOH B 20 420 11 HOH HOH . I 5 HOH B 21 421 38 HOH HOH . I 5 HOH B 22 422 118 HOH HOH . I 5 HOH B 23 423 98 HOH HOH . I 5 HOH B 24 424 164 HOH HOH . I 5 HOH B 25 425 78 HOH HOH . I 5 HOH B 26 426 184 HOH HOH . I 5 HOH B 27 427 66 HOH HOH . I 5 HOH B 28 428 123 HOH HOH . I 5 HOH B 29 429 99 HOH HOH . J 5 HOH C 1 401 131 HOH HOH . J 5 HOH C 2 402 170 HOH HOH . J 5 HOH C 3 403 175 HOH HOH . J 5 HOH C 4 404 107 HOH HOH . J 5 HOH C 5 405 86 HOH HOH . J 5 HOH C 6 406 103 HOH HOH . J 5 HOH C 7 407 132 HOH HOH . J 5 HOH C 8 408 48 HOH HOH . J 5 HOH C 9 409 12 HOH HOH . J 5 HOH C 10 410 115 HOH HOH . J 5 HOH C 11 411 51 HOH HOH . J 5 HOH C 12 412 169 HOH HOH . J 5 HOH C 13 413 94 HOH HOH . J 5 HOH C 14 414 56 HOH HOH . J 5 HOH C 15 415 95 HOH HOH . J 5 HOH C 16 416 83 HOH HOH . J 5 HOH C 17 417 81 HOH HOH . J 5 HOH C 18 418 134 HOH HOH . J 5 HOH C 19 419 129 HOH HOH . J 5 HOH C 20 420 90 HOH HOH . J 5 HOH C 21 421 151 HOH HOH . J 5 HOH C 22 422 77 HOH HOH . J 5 HOH C 23 423 96 HOH HOH . J 5 HOH C 24 424 49 HOH HOH . J 5 HOH C 25 425 179 HOH HOH . J 5 HOH C 26 426 17 HOH HOH . J 5 HOH C 27 427 31 HOH HOH . J 5 HOH C 28 428 122 HOH HOH . J 5 HOH C 29 429 82 HOH HOH . J 5 HOH C 30 430 46 HOH HOH . J 5 HOH C 31 431 128 HOH HOH . J 5 HOH C 32 432 85 HOH HOH . J 5 HOH C 33 433 37 HOH HOH . J 5 HOH C 34 434 71 HOH HOH . J 5 HOH C 35 435 168 HOH HOH . J 5 HOH C 36 436 102 HOH HOH . J 5 HOH C 37 437 29 HOH HOH . J 5 HOH C 38 438 7 HOH HOH . J 5 HOH C 39 439 69 HOH HOH . J 5 HOH C 40 440 14 HOH HOH . J 5 HOH C 41 441 109 HOH HOH . J 5 HOH C 42 442 180 HOH HOH . J 5 HOH C 43 443 39 HOH HOH . J 5 HOH C 44 444 1 HOH HOH . J 5 HOH C 45 445 43 HOH HOH . J 5 HOH C 46 446 100 HOH HOH . J 5 HOH C 47 447 9 HOH HOH . J 5 HOH C 48 448 111 HOH HOH . J 5 HOH C 49 449 176 HOH HOH . J 5 HOH C 50 450 28 HOH HOH . J 5 HOH C 51 451 35 HOH HOH . J 5 HOH C 52 452 45 HOH HOH . J 5 HOH C 53 453 166 HOH HOH . J 5 HOH C 54 454 24 HOH HOH . J 5 HOH C 55 455 148 HOH HOH . J 5 HOH C 56 456 42 HOH HOH . J 5 HOH C 57 457 62 HOH HOH . J 5 HOH C 58 458 181 HOH HOH . J 5 HOH C 59 459 67 HOH HOH . J 5 HOH C 60 460 44 HOH HOH . J 5 HOH C 61 461 59 HOH HOH . J 5 HOH C 62 462 88 HOH HOH . J 5 HOH C 63 463 84 HOH HOH . J 5 HOH C 64 464 4 HOH HOH . J 5 HOH C 65 465 6 HOH HOH . J 5 HOH C 66 466 15 HOH HOH . J 5 HOH C 67 467 112 HOH HOH . J 5 HOH C 68 468 140 HOH HOH . J 5 HOH C 69 469 61 HOH HOH . J 5 HOH C 70 470 25 HOH HOH . J 5 HOH C 71 471 40 HOH HOH . J 5 HOH C 72 472 79 HOH HOH . J 5 HOH C 73 473 113 HOH HOH . J 5 HOH C 74 474 26 HOH HOH . J 5 HOH C 75 475 145 HOH HOH . J 5 HOH C 76 476 160 HOH HOH . J 5 HOH C 77 477 68 HOH HOH . J 5 HOH C 78 478 34 HOH HOH . J 5 HOH C 79 479 178 HOH HOH . J 5 HOH C 80 480 124 HOH HOH . J 5 HOH C 81 481 147 HOH HOH . J 5 HOH C 82 482 167 HOH HOH . J 5 HOH C 83 483 120 HOH HOH . J 5 HOH C 84 484 93 HOH HOH . J 5 HOH C 85 485 141 HOH HOH . J 5 HOH C 86 486 27 HOH HOH . J 5 HOH C 87 487 182 HOH HOH . J 5 HOH C 88 488 177 HOH HOH . J 5 HOH C 89 489 65 HOH HOH . J 5 HOH C 90 490 97 HOH HOH . J 5 HOH C 91 491 137 HOH HOH . J 5 HOH C 92 492 55 HOH HOH . J 5 HOH C 93 493 80 HOH HOH . J 5 HOH C 94 494 158 HOH HOH . J 5 HOH C 95 495 146 HOH HOH . J 5 HOH C 96 496 150 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 4 12.118 18.652 -10.684 1 46.61 ? C1 EDO 302 C 1 HETATM 2 O O1 EDO . . . E 4 11.24 19.685 -11.073 1 51.2 ? O1 EDO 302 C 1 HETATM 3 C C2 EDO . . . E 4 12.033 17.447 -11.536 1 46.85 ? C2 EDO 302 C 1 HETATM 4 O O2 EDO . . . E 4 10.774 16.802 -11.502 1 49.95 ? O2 EDO 302 C 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #