data_8P9H # _model_server_result.job_id rMYjYZw4cmxiLcGZQjgjoQ _model_server_result.datetime_utc '2024-10-19 03:38:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8p9h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 8P9H # _exptl.entry_id 8P9H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8P9H _cell.length_a 42.617 _cell.length_b 52.499 _cell.length_c 56.944 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8P9H _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8P9H _atom_sites.fract_transf_matrix[1][1] 0.023465 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019048 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017561 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 X9C A 1 201 201 X9C 437 . C 3 EDO A 1 202 301 EDO EDO . D 3 EDO A 1 203 401 EDO EDO . E 3 EDO A 1 204 501 EDO EDO . F 3 EDO A 1 205 601 EDO EDO . G 3 EDO A 1 206 701 EDO EDO . H 4 HOH A 1 301 199 HOH HOH . H 4 HOH A 2 302 89 HOH HOH . H 4 HOH A 3 303 233 HOH HOH . H 4 HOH A 4 304 214 HOH HOH . H 4 HOH A 5 305 85 HOH HOH . H 4 HOH A 6 306 129 HOH HOH . H 4 HOH A 7 307 61 HOH HOH . H 4 HOH A 8 308 118 HOH HOH . H 4 HOH A 9 309 84 HOH HOH . H 4 HOH A 10 310 66 HOH HOH . H 4 HOH A 11 311 133 HOH HOH . H 4 HOH A 12 312 63 HOH HOH . H 4 HOH A 13 313 198 HOH HOH . H 4 HOH A 14 314 73 HOH HOH . H 4 HOH A 15 315 143 HOH HOH . H 4 HOH A 16 316 3 HOH HOH . H 4 HOH A 17 317 58 HOH HOH . H 4 HOH A 18 318 135 HOH HOH . H 4 HOH A 19 319 8 HOH HOH . H 4 HOH A 20 320 163 HOH HOH . H 4 HOH A 21 321 216 HOH HOH . H 4 HOH A 22 322 74 HOH HOH . H 4 HOH A 23 323 197 HOH HOH . H 4 HOH A 24 324 91 HOH HOH . H 4 HOH A 25 325 194 HOH HOH . H 4 HOH A 26 326 117 HOH HOH . H 4 HOH A 27 327 59 HOH HOH . H 4 HOH A 28 328 32 HOH HOH . H 4 HOH A 29 329 222 HOH HOH . H 4 HOH A 30 330 13 HOH HOH . H 4 HOH A 31 331 88 HOH HOH . H 4 HOH A 32 332 126 HOH HOH . H 4 HOH A 33 333 44 HOH HOH . H 4 HOH A 34 334 36 HOH HOH . H 4 HOH A 35 335 15 HOH HOH . H 4 HOH A 36 336 25 HOH HOH . H 4 HOH A 37 337 53 HOH HOH . H 4 HOH A 38 338 125 HOH HOH . H 4 HOH A 39 339 10 HOH HOH . H 4 HOH A 40 340 72 HOH HOH . H 4 HOH A 41 341 64 HOH HOH . H 4 HOH A 42 342 26 HOH HOH . H 4 HOH A 43 343 42 HOH HOH . H 4 HOH A 44 344 187 HOH HOH . H 4 HOH A 45 345 165 HOH HOH . H 4 HOH A 46 346 52 HOH HOH . H 4 HOH A 47 347 55 HOH HOH . H 4 HOH A 48 348 50 HOH HOH . H 4 HOH A 49 349 147 HOH HOH . H 4 HOH A 50 350 119 HOH HOH . H 4 HOH A 51 351 49 HOH HOH . H 4 HOH A 52 352 47 HOH HOH . H 4 HOH A 53 353 87 HOH HOH . H 4 HOH A 54 354 4 HOH HOH . H 4 HOH A 55 355 7 HOH HOH . H 4 HOH A 56 356 23 HOH HOH . H 4 HOH A 57 357 94 HOH HOH . H 4 HOH A 58 358 54 HOH HOH . H 4 HOH A 59 359 103 HOH HOH . H 4 HOH A 60 360 102 HOH HOH . H 4 HOH A 61 361 2 HOH HOH . H 4 HOH A 62 362 9 HOH HOH . H 4 HOH A 63 363 1 HOH HOH . H 4 HOH A 64 364 130 HOH HOH . H 4 HOH A 65 365 29 HOH HOH . H 4 HOH A 66 366 16 HOH HOH . H 4 HOH A 67 367 45 HOH HOH . H 4 HOH A 68 368 107 HOH HOH . H 4 HOH A 69 369 189 HOH HOH . H 4 HOH A 70 370 17 HOH HOH . H 4 HOH A 71 371 168 HOH HOH . H 4 HOH A 72 372 258 HOH HOH . H 4 HOH A 73 373 68 HOH HOH . H 4 HOH A 74 374 171 HOH HOH . H 4 HOH A 75 375 46 HOH HOH . H 4 HOH A 76 376 207 HOH HOH . H 4 HOH A 77 377 28 HOH HOH . H 4 HOH A 78 378 178 HOH HOH . H 4 HOH A 79 379 19 HOH HOH . H 4 HOH A 80 380 115 HOH HOH . H 4 HOH A 81 381 153 HOH HOH . H 4 HOH A 82 382 111 HOH HOH . H 4 HOH A 83 383 67 HOH HOH . H 4 HOH A 84 384 154 HOH HOH . H 4 HOH A 85 385 60 HOH HOH . H 4 HOH A 86 386 201 HOH HOH . H 4 HOH A 87 387 41 HOH HOH . H 4 HOH A 88 388 18 HOH HOH . H 4 HOH A 89 389 21 HOH HOH . H 4 HOH A 90 390 152 HOH HOH . H 4 HOH A 91 391 37 HOH HOH . H 4 HOH A 92 392 6 HOH HOH . H 4 HOH A 93 393 96 HOH HOH . H 4 HOH A 94 394 20 HOH HOH . H 4 HOH A 95 395 156 HOH HOH . H 4 HOH A 96 396 228 HOH HOH . H 4 HOH A 97 397 122 HOH HOH . H 4 HOH A 98 398 62 HOH HOH . H 4 HOH A 99 399 254 HOH HOH . H 4 HOH A 100 400 79 HOH HOH . H 4 HOH A 101 401 75 HOH HOH . H 4 HOH A 102 402 226 HOH HOH . H 4 HOH A 103 403 114 HOH HOH . H 4 HOH A 104 404 65 HOH HOH . H 4 HOH A 105 405 108 HOH HOH . H 4 HOH A 106 406 82 HOH HOH . H 4 HOH A 107 407 157 HOH HOH . H 4 HOH A 108 408 97 HOH HOH . H 4 HOH A 109 409 210 HOH HOH . H 4 HOH A 110 410 76 HOH HOH . H 4 HOH A 111 411 51 HOH HOH . H 4 HOH A 112 412 38 HOH HOH . H 4 HOH A 113 413 158 HOH HOH . H 4 HOH A 114 414 180 HOH HOH . H 4 HOH A 115 415 183 HOH HOH . H 4 HOH A 116 416 204 HOH HOH . H 4 HOH A 117 417 218 HOH HOH . H 4 HOH A 118 418 81 HOH HOH . H 4 HOH A 119 419 138 HOH HOH . H 4 HOH A 120 420 227 HOH HOH . H 4 HOH A 121 421 217 HOH HOH . H 4 HOH A 122 422 172 HOH HOH . H 4 HOH A 123 423 177 HOH HOH . H 4 HOH A 124 424 202 HOH HOH . H 4 HOH A 125 425 57 HOH HOH . H 4 HOH A 126 426 121 HOH HOH . H 4 HOH A 127 427 185 HOH HOH . H 4 HOH A 128 428 236 HOH HOH . H 4 HOH A 129 429 110 HOH HOH . H 4 HOH A 130 430 139 HOH HOH . H 4 HOH A 131 431 106 HOH HOH . H 4 HOH A 132 432 219 HOH HOH . H 4 HOH A 133 433 131 HOH HOH . H 4 HOH A 134 434 186 HOH HOH . H 4 HOH A 135 435 90 HOH HOH . H 4 HOH A 136 436 35 HOH HOH . H 4 HOH A 137 437 239 HOH HOH . H 4 HOH A 138 438 137 HOH HOH . H 4 HOH A 139 439 93 HOH HOH . H 4 HOH A 140 440 48 HOH HOH . H 4 HOH A 141 441 109 HOH HOH . H 4 HOH A 142 442 259 HOH HOH . H 4 HOH A 143 443 100 HOH HOH . H 4 HOH A 144 444 56 HOH HOH . H 4 HOH A 145 445 99 HOH HOH . H 4 HOH A 146 446 95 HOH HOH . H 4 HOH A 147 447 223 HOH HOH . H 4 HOH A 148 448 104 HOH HOH . H 4 HOH A 149 449 92 HOH HOH . H 4 HOH A 150 450 244 HOH HOH . H 4 HOH A 151 451 80 HOH HOH . H 4 HOH A 152 452 257 HOH HOH . H 4 HOH A 153 453 241 HOH HOH . H 4 HOH A 154 454 128 HOH HOH . H 4 HOH A 155 455 132 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 3 4.076 13.797 -13.714 1 40.07 ? C1 EDO 205 A 1 HETATM 2 O O1 EDO . . . F 3 3.141 14.736 -13.167 1 40.2 ? O1 EDO 205 A 1 HETATM 3 C C2 EDO . . . F 3 4.994 14.521 -14.683 1 39.88 ? C2 EDO 205 A 1 HETATM 4 O O2 EDO . . . F 3 4.188 15.1 -15.713 1 39.46 ? O2 EDO 205 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #