data_8P9L # _model_server_result.job_id S6LCo8UIRTPtoE7Ik3Q7xQ _model_server_result.datetime_utc '2025-01-25 13:45:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8p9l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 8P9L # _exptl.entry_id 8P9L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 435.477 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-(2-azanyl-5-phenyl-phenyl)-5-(6-methyl-7-oxidanylidene-1~{H}-pyrrolo[2,3-c]pyridin-4-yl)pyridine-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8P9L _cell.length_a 42.232 _cell.length_b 52.397 _cell.length_c 54.984 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8P9L _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C26 H21 N5 O2' _chem_comp.formula_weight 435.477 _chem_comp.id XA3 _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-(2-azanyl-5-phenyl-phenyl)-5-(6-methyl-7-oxidanylidene-1~{H}-pyrrolo[2,3-c]pyridin-4-yl)pyridine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C25 N4 XA3 sing 385 n n N4 C24 XA3 sing 386 n n N4 C XA3 sing 387 n n O C XA3 doub 388 n n C24 C5 XA3 doub 389 n n C23 C22 XA3 doub 390 n y C23 C6 XA3 sing 391 n y C C1 XA3 sing 392 n n C22 C8 XA3 sing 393 n y C5 C6 XA3 sing 394 n n C5 C2 XA3 sing 395 n n C6 C7 XA3 doub 396 n y C1 C2 XA3 doub 397 n y C1 N XA3 sing 398 n y O1 C9 XA3 doub 399 n n C2 C3 XA3 sing 400 n y C8 C9 XA3 sing 401 n n C8 N1 XA3 doub 402 n y N C4 XA3 sing 403 n y C9 N2 XA3 sing 404 n n C7 N1 XA3 sing 405 n y C3 C4 XA3 doub 406 n y N3 C21 XA3 sing 407 n n N2 C10 XA3 sing 408 n n C21 C10 XA3 doub 409 n y C21 C20 XA3 sing 410 n y C10 C11 XA3 sing 411 n y C20 C19 XA3 doub 412 n y C11 C12 XA3 doub 413 n y C19 C12 XA3 sing 414 n y C12 C13 XA3 sing 415 n n C13 C18 XA3 doub 416 n y C13 C14 XA3 sing 417 n y C18 C17 XA3 sing 418 n y C14 C15 XA3 doub 419 n y C17 C16 XA3 doub 420 n y C15 C16 XA3 sing 421 n y C4 H1 XA3 sing 422 n n N H2 XA3 sing 423 n n C11 H3 XA3 sing 424 n n C14 H4 XA3 sing 425 n n C15 H5 XA3 sing 426 n n C16 H6 XA3 sing 427 n n C17 H7 XA3 sing 428 n n C18 H8 XA3 sing 429 n n C19 H9 XA3 sing 430 n n C20 H10 XA3 sing 431 n n C22 H11 XA3 sing 432 n n C23 H12 XA3 sing 433 n n C24 H13 XA3 sing 434 n n C25 H14 XA3 sing 435 n n C25 H15 XA3 sing 436 n n C25 H16 XA3 sing 437 n n C3 H17 XA3 sing 438 n n C7 H18 XA3 sing 439 n n N2 H19 XA3 sing 440 n n N3 H20 XA3 sing 441 n n N3 H21 XA3 sing 442 n n # _atom_sites.entry_id 8P9L _atom_sites.fract_transf_matrix[1][1] 0.023679 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019085 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018187 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 XA3 A 1 201 201 XA3 512 . C 3 EDO A 1 202 301 EDO EDO . D 3 EDO A 1 203 501 EDO EDO . E 3 EDO A 1 204 601 EDO EDO . F 3 EDO A 1 205 801 EDO EDO . G 4 HOH A 1 301 78 HOH HOH . G 4 HOH A 2 302 133 HOH HOH . G 4 HOH A 3 303 3 HOH HOH . G 4 HOH A 4 304 101 HOH HOH . G 4 HOH A 5 305 193 HOH HOH . G 4 HOH A 6 306 178 HOH HOH . G 4 HOH A 7 307 118 HOH HOH . G 4 HOH A 8 308 165 HOH HOH . G 4 HOH A 9 309 10 HOH HOH . G 4 HOH A 10 310 24 HOH HOH . G 4 HOH A 11 311 37 HOH HOH . G 4 HOH A 12 312 126 HOH HOH . G 4 HOH A 13 313 195 HOH HOH . G 4 HOH A 14 314 187 HOH HOH . G 4 HOH A 15 315 136 HOH HOH . G 4 HOH A 16 316 56 HOH HOH . G 4 HOH A 17 317 29 HOH HOH . G 4 HOH A 18 318 28 HOH HOH . G 4 HOH A 19 319 8 HOH HOH . G 4 HOH A 20 320 43 HOH HOH . G 4 HOH A 21 321 146 HOH HOH . G 4 HOH A 22 322 26 HOH HOH . G 4 HOH A 23 323 111 HOH HOH . G 4 HOH A 24 324 132 HOH HOH . G 4 HOH A 25 325 22 HOH HOH . G 4 HOH A 26 326 86 HOH HOH . G 4 HOH A 27 327 155 HOH HOH . G 4 HOH A 28 328 163 HOH HOH . G 4 HOH A 29 329 79 HOH HOH . G 4 HOH A 30 330 77 HOH HOH . G 4 HOH A 31 331 44 HOH HOH . G 4 HOH A 32 332 7 HOH HOH . G 4 HOH A 33 333 5 HOH HOH . G 4 HOH A 34 334 140 HOH HOH . G 4 HOH A 35 335 42 HOH HOH . G 4 HOH A 36 336 13 HOH HOH . G 4 HOH A 37 337 34 HOH HOH . G 4 HOH A 38 338 49 HOH HOH . G 4 HOH A 39 339 2 HOH HOH . G 4 HOH A 40 340 1 HOH HOH . G 4 HOH A 41 341 21 HOH HOH . G 4 HOH A 42 342 54 HOH HOH . G 4 HOH A 43 343 48 HOH HOH . G 4 HOH A 44 344 61 HOH HOH . G 4 HOH A 45 345 128 HOH HOH . G 4 HOH A 46 346 70 HOH HOH . G 4 HOH A 47 347 18 HOH HOH . G 4 HOH A 48 348 14 HOH HOH . G 4 HOH A 49 349 15 HOH HOH . G 4 HOH A 50 350 105 HOH HOH . G 4 HOH A 51 351 129 HOH HOH . G 4 HOH A 52 352 122 HOH HOH . G 4 HOH A 53 353 60 HOH HOH . G 4 HOH A 54 354 99 HOH HOH . G 4 HOH A 55 355 125 HOH HOH . G 4 HOH A 56 356 62 HOH HOH . G 4 HOH A 57 357 47 HOH HOH . G 4 HOH A 58 358 104 HOH HOH . G 4 HOH A 59 359 89 HOH HOH . G 4 HOH A 60 360 200 HOH HOH . G 4 HOH A 61 361 168 HOH HOH . G 4 HOH A 62 362 95 HOH HOH . G 4 HOH A 63 363 213 HOH HOH . G 4 HOH A 64 364 75 HOH HOH . G 4 HOH A 65 365 74 HOH HOH . G 4 HOH A 66 366 55 HOH HOH . G 4 HOH A 67 367 109 HOH HOH . G 4 HOH A 68 368 205 HOH HOH . G 4 HOH A 69 369 64 HOH HOH . G 4 HOH A 70 370 171 HOH HOH . G 4 HOH A 71 371 9 HOH HOH . G 4 HOH A 72 372 33 HOH HOH . G 4 HOH A 73 373 36 HOH HOH . G 4 HOH A 74 374 91 HOH HOH . G 4 HOH A 75 375 98 HOH HOH . G 4 HOH A 76 376 83 HOH HOH . G 4 HOH A 77 377 113 HOH HOH . G 4 HOH A 78 378 175 HOH HOH . G 4 HOH A 79 379 211 HOH HOH . G 4 HOH A 80 380 39 HOH HOH . G 4 HOH A 81 381 41 HOH HOH . G 4 HOH A 82 382 51 HOH HOH . G 4 HOH A 83 383 46 HOH HOH . G 4 HOH A 84 384 73 HOH HOH . G 4 HOH A 85 385 20 HOH HOH . G 4 HOH A 86 386 96 HOH HOH . G 4 HOH A 87 387 156 HOH HOH . G 4 HOH A 88 388 11 HOH HOH . G 4 HOH A 89 389 114 HOH HOH . G 4 HOH A 90 390 135 HOH HOH . G 4 HOH A 91 391 169 HOH HOH . G 4 HOH A 92 392 107 HOH HOH . G 4 HOH A 93 393 158 HOH HOH . G 4 HOH A 94 394 210 HOH HOH . G 4 HOH A 95 395 194 HOH HOH . G 4 HOH A 96 396 112 HOH HOH . G 4 HOH A 97 397 176 HOH HOH . G 4 HOH A 98 398 142 HOH HOH . G 4 HOH A 99 399 110 HOH HOH . G 4 HOH A 100 400 59 HOH HOH . G 4 HOH A 101 401 117 HOH HOH . G 4 HOH A 102 402 189 HOH HOH . G 4 HOH A 103 403 130 HOH HOH . G 4 HOH A 104 404 209 HOH HOH . G 4 HOH A 105 405 131 HOH HOH . G 4 HOH A 106 406 82 HOH HOH . G 4 HOH A 107 407 161 HOH HOH . G 4 HOH A 108 408 134 HOH HOH . G 4 HOH A 109 409 150 HOH HOH . G 4 HOH A 110 410 174 HOH HOH . G 4 HOH A 111 411 212 HOH HOH . G 4 HOH A 112 412 164 HOH HOH . G 4 HOH A 113 413 87 HOH HOH . G 4 HOH A 114 414 166 HOH HOH . G 4 HOH A 115 415 173 HOH HOH . G 4 HOH A 116 416 31 HOH HOH . G 4 HOH A 117 417 106 HOH HOH . G 4 HOH A 118 418 58 HOH HOH . G 4 HOH A 119 419 80 HOH HOH . G 4 HOH A 120 420 121 HOH HOH . G 4 HOH A 121 421 103 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 XA3 . . . B 2 -15.771 14.132 -6.455 1 22.75 ? C1 XA3 201 A 1 HETATM 2 C C2 XA3 . . . B 2 -16.61 13.045 -6.176 1 22.59 ? C2 XA3 201 A 1 HETATM 3 C C4 XA3 . . . B 2 -17.331 14.809 -4.994 1 23.73 ? C4 XA3 201 A 1 HETATM 4 C C5 XA3 . . . B 2 -16.331 11.759 -6.783 1 20.93 ? C5 XA3 201 A 1 HETATM 5 C C6 XA3 . . . B 2 -17.136 10.54 -6.513 1 21.38 ? C6 XA3 201 A 1 HETATM 6 C C9 XA3 . . . B 2 -19.253 6.986 -5.555 1 22.88 ? C9 XA3 201 A 1 HETATM 7 C C10 XA3 . . . B 2 -20.22 5.813 -3.613 1 22.23 ? C10 XA3 201 A 1 HETATM 8 N N XA3 . . . B 2 -16.24 15.196 -5.721 1 23.38 ? N XA3 201 A 1 HETATM 9 C C XA3 . . . B 2 -14.669 14.044 -7.337 1 21.26 ? C XA3 201 A 1 HETATM 10 O O XA3 . . . B 2 -13.918 14.97 -7.625 1 21.27 ? O XA3 201 A 1 HETATM 11 C C11 XA3 . . . B 2 -19.491 5.286 -2.553 1 20.87 ? C11 XA3 201 A 1 HETATM 12 C C12 XA3 . . . B 2 -19.987 4.194 -1.836 1 21.69 ? C12 XA3 201 A 1 HETATM 13 C C13 XA3 . . . B 2 -19.219 3.656 -0.689 1 21.23 ? C13 XA3 201 A 1 HETATM 14 C C14 XA3 . . . B 2 -19.864 3.101 0.416 1 21.94 ? C14 XA3 201 A 1 HETATM 15 C C15 XA3 . . . B 2 -19.139 2.662 1.511 1 21.98 ? C15 XA3 201 A 1 HETATM 16 C C16 XA3 . . . B 2 -17.762 2.767 1.521 1 21.17 ? C16 XA3 201 A 1 HETATM 17 C C17 XA3 . . . B 2 -17.109 3.31 0.433 1 21.03 ? C17 XA3 201 A 1 HETATM 18 C C18 XA3 . . . B 2 -17.827 3.744 -0.667 1 20.65 ? C18 XA3 201 A 1 HETATM 19 C C19 XA3 . . . B 2 -21.214 3.651 -2.214 1 23.07 ? C19 XA3 201 A 1 HETATM 20 C C20 XA3 . . . B 2 -21.932 4.177 -3.271 1 23.09 ? C20 XA3 201 A 1 HETATM 21 C C21 XA3 . . . B 2 -21.454 5.269 -3.997 1 23.64 ? C21 XA3 201 A 1 HETATM 22 C C22 XA3 . . . B 2 -17.978 8.388 -7.19 1 21.94 ? C22 XA3 201 A 1 HETATM 23 C C23 XA3 . . . B 2 -17.288 9.552 -7.48 1 22.37 ? C23 XA3 201 A 1 HETATM 24 C C24 XA3 . . . B 2 -15.258 11.696 -7.611 1 20.91 ? C24 XA3 201 A 1 HETATM 25 C C25 XA3 . . . B 2 -13.325 12.621 -8.796 1 20.85 ? C25 XA3 201 A 1 HETATM 26 C C3 XA3 . . . B 2 -17.591 13.492 -5.248 1 23.74 ? C3 XA3 201 A 1 HETATM 27 C C7 XA3 . . . B 2 -17.714 10.308 -5.271 1 22.59 ? C7 XA3 201 A 1 HETATM 28 C C8 XA3 . . . B 2 -18.513 8.246 -5.914 1 21.85 ? C8 XA3 201 A 1 HETATM 29 N N1 XA3 . . . B 2 -18.39 9.189 -4.962 1 22.23 ? N1 XA3 201 A 1 HETATM 30 N N2 XA3 . . . B 2 -19.7 6.948 -4.281 1 22.63 ? N2 XA3 201 A 1 HETATM 31 N N3 XA3 . . . B 2 -22.178 5.808 -5.044 1 26.03 ? N3 XA3 201 A 1 HETATM 32 N N4 XA3 . . . B 2 -14.465 12.775 -7.895 1 20.43 ? N4 XA3 201 A 1 HETATM 33 O O1 XA3 . . . B 2 -19.339 6.047 -6.343 1 25.42 ? O1 XA3 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 33 #