data_8PB8
#
_model_server_result.job_id            AblV1EeBVV1lHUeTSKTBEA 
_model_server_result.datetime_utc      '2024-11-22 04:04:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8pb8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":401}' 
#
_entry.id    8PB8 
#
_exptl.entry_id    8PB8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8PB8 
_cell.length_a            62.2 
_cell.length_b            62.2 
_cell.length_c            154.83 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8PB8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        78 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 F N N 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 321 n n 
N HN1 SAH sing 322 n n 
N HN2 SAH sing 323 n n 
CA CB SAH sing 324 n n 
CA C SAH sing 325 n n 
CA HA SAH sing 326 n n 
CB CG SAH sing 327 n n 
CB HB1 SAH sing 328 n n 
CB HB2 SAH sing 329 n n 
CG SD SAH sing 330 n n 
CG HG1 SAH sing 331 n n 
CG HG2 SAH sing 332 n n 
SD C5' SAH sing 333 n n 
C O SAH doub 334 n n 
C OXT SAH sing 335 n n 
OXT HXT SAH sing 336 n n 
C5' C4' SAH sing 337 n n 
C5' "H5'1" SAH sing 338 n n 
C5' "H5'2" SAH sing 339 n n 
C4' O4' SAH sing 340 n n 
C4' C3' SAH sing 341 n n 
C4' H4' SAH sing 342 n n 
O4' C1' SAH sing 343 n n 
C3' O3' SAH sing 344 n n 
C3' C2' SAH sing 345 n n 
C3' H3' SAH sing 346 n n 
O3' HO3' SAH sing 347 n n 
C2' O2' SAH sing 348 n n 
C2' C1' SAH sing 349 n n 
C2' H2' SAH sing 350 n n 
O2' HO2' SAH sing 351 n n 
C1' N9 SAH sing 352 n n 
C1' H1' SAH sing 353 n n 
N9 C8 SAH sing 354 n y 
N9 C4 SAH sing 355 n y 
C8 N7 SAH doub 356 n y 
C8 H8 SAH sing 357 n n 
N7 C5 SAH sing 358 n y 
C5 C6 SAH sing 359 n y 
C5 C4 SAH doub 360 n y 
C6 N6 SAH sing 361 n n 
C6 N1 SAH doub 362 n y 
N6 HN61 SAH sing 363 n n 
N6 HN62 SAH sing 364 n n 
N1 C2 SAH sing 365 n y 
C2 N3 SAH doub 366 n y 
C2 H2 SAH sing 367 n n 
N3 C4 SAH sing 368 n y 
#
_atom_sites.entry_id                     8PB8 
_atom_sites.fract_transf_matrix[1][1]    0.016077 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016077 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006459 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SAH A 1 401 401 SAH SAH . 
D 3 P6G A 1 402 501 P6G P6G . 
E 4 CL A 1 403 1 CL CL . 
F 2 SAH B 1 401 401 SAH SAH . 
G 3 P6G B 1 402 501 P6G P6G . 
H 5 HOH A 1 501 5 HOH HOH . 
H 5 HOH A 2 502 3 HOH HOH . 
H 5 HOH A 3 503 2 HOH HOH . 
H 5 HOH A 4 504 14 HOH HOH . 
H 5 HOH A 5 505 15 HOH HOH . 
H 5 HOH A 6 506 7 HOH HOH . 
H 5 HOH A 7 507 4 HOH HOH . 
H 5 HOH A 8 508 13 HOH HOH . 
H 5 HOH A 9 509 17 HOH HOH . 
H 5 HOH A 10 510 6 HOH HOH . 
H 5 HOH A 11 511 16 HOH HOH . 
I 5 HOH B 1 501 21 HOH HOH . 
I 5 HOH B 2 502 8 HOH HOH . 
I 5 HOH B 3 503 9 HOH HOH . 
I 5 HOH B 4 504 18 HOH HOH . 
I 5 HOH B 5 505 10 HOH HOH . 
I 5 HOH B 6 506 19 HOH HOH . 
I 5 HOH B 7 507 20 HOH HOH . 
I 5 HOH B 8 508 11 HOH HOH . 
I 5 HOH B 9 509 1 HOH HOH . 
I 5 HOH B 10 510 12 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . F 2 26.94 34.789 16.787 1 43.47 ? N SAH 401 B 1 
HETATM 2 C CA SAH . . . F 2 26.049 35.795 16.129 1 40.31 ? CA SAH 401 B 1 
HETATM 3 C CB SAH . . . F 2 26.751 37.142 15.884 1 42.88 ? CB SAH 401 B 1 
HETATM 4 C CG SAH . . . F 2 28.009 37.059 15.027 1 35.58 ? CG SAH 401 B 1 
HETATM 5 S SD SAH . . . F 2 28.747 38.643 14.537 1 49.93 ? SD SAH 401 B 1 
HETATM 6 C C SAH . . . F 2 25.489 35.318 14.764 1 41.98 ? C SAH 401 B 1 
HETATM 7 O O SAH . . . F 2 24.511 35.981 14.269 1 48.9 ? O SAH 401 B 1 
HETATM 8 O OXT SAH . . . F 2 26.03 34.348 14.193 1 40.54 ? OXT SAH 401 B 1 
HETATM 9 C C5' SAH . . . F 2 30.211 38.742 15.604 1 40.46 ? C5' SAH 401 B 1 
HETATM 10 C C4' SAH . . . F 2 29.823 39.072 17.033 1 41.15 ? C4' SAH 401 B 1 
HETATM 11 O O4' SAH . . . F 2 30.97 38.962 17.905 1 39.03 ? O4' SAH 401 B 1 
HETATM 12 C C3' SAH . . . F 2 29.324 40.52 17.138 1 46.04 ? C3' SAH 401 B 1 
HETATM 13 O O3' SAH . . . F 2 28.094 40.583 17.85 1 42.67 ? O3' SAH 401 B 1 
HETATM 14 C C2' SAH . . . F 2 30.445 41.233 17.906 1 42.08 ? C2' SAH 401 B 1 
HETATM 15 O O2' SAH . . . F 2 29.94 42.28 18.729 1 44.65 ? O2' SAH 401 B 1 
HETATM 16 C C1' SAH . . . F 2 30.997 40.092 18.749 1 43.22 ? C1' SAH 401 B 1 
HETATM 17 N N9 SAH . . . F 2 32.368 40.281 19.213 1 37.75 ? N9 SAH 401 B 1 
HETATM 18 C C8 SAH . . . F 2 33.374 40.967 18.585 1 37.04 ? C8 SAH 401 B 1 
HETATM 19 N N7 SAH . . . F 2 34.506 40.969 19.245 1 38.15 ? N7 SAH 401 B 1 
HETATM 20 C C5 SAH . . . F 2 34.226 40.232 20.387 1 34.96 ? C5 SAH 401 B 1 
HETATM 21 C C6 SAH . . . F 2 35.009 39.864 21.496 1 39.12 ? C6 SAH 401 B 1 
HETATM 22 N N6 SAH . . . F 2 36.29 40.203 21.648 1 35.26 ? N6 SAH 401 B 1 
HETATM 23 N N1 SAH . . . F 2 34.422 39.123 22.462 1 32.48 ? N1 SAH 401 B 1 
HETATM 24 C C2 SAH . . . F 2 33.139 38.78 22.318 1 31.01 ? C2 SAH 401 B 1 
HETATM 25 N N3 SAH . . . F 2 32.303 39.07 21.318 1 37.43 ? N3 SAH 401 B 1 
HETATM 26 C C4 SAH . . . F 2 32.908 39.803 20.378 1 35.18 ? C4 SAH 401 B 1 
HETATM 27 H H2 SAH . . . F 2 32.765 38.244 23.047 1 37.21 ? H2 SAH 401 B 1 
HETATM 28 H HN1 SAH . . . F 2 27.599 35.142 17.257 1 52.16 ? HN1 SAH 401 B 1 
HETATM 29 H HN2 SAH . . . F 2 27.341 34.239 16.226 1 52.16 ? HN2 SAH 401 B 1 
HETATM 30 H HA SAH . . . F 2 25.315 35.829 16.776 1 48.37 ? HA SAH 401 B 1 
HETATM 31 H HB1 SAH . . . F 2 26.972 37.532 16.755 1 51.45 ? HB1 SAH 401 B 1 
HETATM 32 H HB2 SAH . . . F 2 26.107 37.749 15.466 1 51.45 ? HB2 SAH 401 B 1 
HETATM 33 H HG1 SAH . . . F 2 27.789 36.565 14.212 1 42.7 ? HG1 SAH 401 B 1 
HETATM 34 H HG2 SAH . . . F 2 28.684 36.554 15.525 1 42.7 ? HG2 SAH 401 B 1 
HETATM 35 H "H5'1" SAH . . . F 2 30.798 39.433 15.236 1 48.55 ? "H5'1" SAH 401 B 1 
HETATM 36 H "H5'2" SAH . . . F 2 30.666 37.876 15.561 1 48.55 ? "H5'2" SAH 401 B 1 
HETATM 37 H H4' SAH . . . F 2 29.159 38.443 17.381 1 49.38 ? H4' SAH 401 B 1 
HETATM 38 H H3' SAH . . . F 2 29.17 40.923 16.26 1 55.25 ? H3' SAH 401 B 1 
HETATM 39 H HO3' SAH . . . F 2 28.188 40.053 18.508 1 51.21 ? HO3' SAH 401 B 1 
HETATM 40 H H2' SAH . . . F 2 31.115 41.602 17.294 1 50.5 ? H2' SAH 401 B 1 
HETATM 41 H HO2' SAH . . . F 2 29.276 41.957 19.15 1 53.58 ? HO2' SAH 401 B 1 
HETATM 42 H H1' SAH . . . F 2 30.462 39.923 19.551 1 51.87 ? H1' SAH 401 B 1 
HETATM 43 H H8 SAH . . . F 2 33.238 41.409 17.722 1 44.45 ? H8 SAH 401 B 1 
HETATM 44 H HN61 SAH . . . F 2 36.677 40.687 21.02 1 42.31 ? HN61 SAH 401 B 1 
HETATM 45 H HN62 SAH . . . F 2 36.716 39.933 22.374 1 42.31 ? HN62 SAH 401 B 1 
HETATM 46 H HN3 SAH . . . F 2 26.525 34.257 17.357 1 52.16 ? HN3 SAH 401 B 1 
#
_model_server_stats.io_time_ms              46 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           46 
#