data_8PBO # _model_server_result.job_id rIohHhnrEsPYWGVvmdtioQ _model_server_result.datetime_utc '2024-11-23 21:38:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pbo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 8PBO # _exptl.entry_id 8PBO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.859 _cell.angle_gamma 90 _cell.entry_id 8PBO _cell.length_a 93.413 _cell.length_b 60.611 _cell.length_c 117.945 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PBO _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,M 1 1 B,K,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 K N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8PBO _atom_sites.fract_transf_matrix[1][1] 0.010705 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002444 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016499 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008697 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 Y5I A 1 501 501 Y5I 705 . D 3 GOL A 1 502 502 GOL GOL . E 3 GOL A 1 503 504 GOL GOL . F 3 GOL A 1 504 505 GOL GOL . G 4 SO4 A 1 505 1 SO4 SO4 . H 4 SO4 A 1 506 2 SO4 SO4 . I 4 SO4 A 1 507 4 SO4 SO4 . J 4 SO4 A 1 508 5 SO4 SO4 . K 3 GOL B 1 501 501 GOL GOL . L 4 SO4 B 1 502 3 SO4 SO4 . M 5 HOH A 1 601 130 HOH HOH . M 5 HOH A 2 602 154 HOH HOH . M 5 HOH A 3 603 92 HOH HOH . M 5 HOH A 4 604 97 HOH HOH . M 5 HOH A 5 605 176 HOH HOH . M 5 HOH A 6 606 81 HOH HOH . M 5 HOH A 7 607 115 HOH HOH . M 5 HOH A 8 608 43 HOH HOH . M 5 HOH A 9 609 47 HOH HOH . M 5 HOH A 10 610 165 HOH HOH . M 5 HOH A 11 611 146 HOH HOH . M 5 HOH A 12 612 169 HOH HOH . M 5 HOH A 13 613 31 HOH HOH . M 5 HOH A 14 614 7 HOH HOH . M 5 HOH A 15 615 120 HOH HOH . M 5 HOH A 16 616 62 HOH HOH . M 5 HOH A 17 617 2 HOH HOH . M 5 HOH A 18 618 37 HOH HOH . M 5 HOH A 19 619 15 HOH HOH . M 5 HOH A 20 620 9 HOH HOH . M 5 HOH A 21 621 147 HOH HOH . M 5 HOH A 22 622 60 HOH HOH . M 5 HOH A 23 623 136 HOH HOH . M 5 HOH A 24 624 40 HOH HOH . M 5 HOH A 25 625 88 HOH HOH . M 5 HOH A 26 626 153 HOH HOH . M 5 HOH A 27 627 28 HOH HOH . M 5 HOH A 28 628 174 HOH HOH . M 5 HOH A 29 629 19 HOH HOH . M 5 HOH A 30 630 161 HOH HOH . M 5 HOH A 31 631 29 HOH HOH . M 5 HOH A 32 632 131 HOH HOH . M 5 HOH A 33 633 16 HOH HOH . M 5 HOH A 34 634 52 HOH HOH . M 5 HOH A 35 635 85 HOH HOH . M 5 HOH A 36 636 61 HOH HOH . M 5 HOH A 37 637 27 HOH HOH . M 5 HOH A 38 638 35 HOH HOH . M 5 HOH A 39 639 73 HOH HOH . M 5 HOH A 40 640 14 HOH HOH . M 5 HOH A 41 641 11 HOH HOH . M 5 HOH A 42 642 1 HOH HOH . M 5 HOH A 43 643 23 HOH HOH . M 5 HOH A 44 644 93 HOH HOH . M 5 HOH A 45 645 46 HOH HOH . M 5 HOH A 46 646 144 HOH HOH . M 5 HOH A 47 647 66 HOH HOH . M 5 HOH A 48 648 125 HOH HOH . M 5 HOH A 49 649 12 HOH HOH . M 5 HOH A 50 650 83 HOH HOH . M 5 HOH A 51 651 96 HOH HOH . M 5 HOH A 52 652 95 HOH HOH . M 5 HOH A 53 653 134 HOH HOH . M 5 HOH A 54 654 172 HOH HOH . M 5 HOH A 55 655 107 HOH HOH . M 5 HOH A 56 656 5 HOH HOH . M 5 HOH A 57 657 78 HOH HOH . M 5 HOH A 58 658 105 HOH HOH . M 5 HOH A 59 659 148 HOH HOH . M 5 HOH A 60 660 89 HOH HOH . M 5 HOH A 61 661 30 HOH HOH . M 5 HOH A 62 662 72 HOH HOH . M 5 HOH A 63 663 150 HOH HOH . M 5 HOH A 64 664 76 HOH HOH . M 5 HOH A 65 665 10 HOH HOH . M 5 HOH A 66 666 22 HOH HOH . M 5 HOH A 67 667 113 HOH HOH . M 5 HOH A 68 668 3 HOH HOH . M 5 HOH A 69 669 177 HOH HOH . M 5 HOH A 70 670 36 HOH HOH . M 5 HOH A 71 671 103 HOH HOH . M 5 HOH A 72 672 65 HOH HOH . M 5 HOH A 73 673 58 HOH HOH . M 5 HOH A 74 674 141 HOH HOH . M 5 HOH A 75 675 20 HOH HOH . M 5 HOH A 76 676 164 HOH HOH . M 5 HOH A 77 677 118 HOH HOH . M 5 HOH A 78 678 6 HOH HOH . M 5 HOH A 79 679 50 HOH HOH . M 5 HOH A 80 680 44 HOH HOH . M 5 HOH A 81 681 69 HOH HOH . M 5 HOH A 82 682 79 HOH HOH . M 5 HOH A 83 683 82 HOH HOH . M 5 HOH A 84 684 159 HOH HOH . M 5 HOH A 85 685 108 HOH HOH . M 5 HOH A 86 686 104 HOH HOH . M 5 HOH A 87 687 70 HOH HOH . M 5 HOH A 88 688 126 HOH HOH . M 5 HOH A 89 689 84 HOH HOH . M 5 HOH A 90 690 99 HOH HOH . M 5 HOH A 91 691 80 HOH HOH . M 5 HOH A 92 692 101 HOH HOH . M 5 HOH A 93 693 170 HOH HOH . M 5 HOH A 94 694 129 HOH HOH . M 5 HOH A 95 695 137 HOH HOH . M 5 HOH A 96 696 157 HOH HOH . M 5 HOH A 97 697 67 HOH HOH . M 5 HOH A 98 698 100 HOH HOH . M 5 HOH A 99 699 56 HOH HOH . M 5 HOH A 100 700 135 HOH HOH . M 5 HOH A 101 701 68 HOH HOH . M 5 HOH A 102 702 178 HOH HOH . M 5 HOH A 103 703 98 HOH HOH . M 5 HOH A 104 704 91 HOH HOH . M 5 HOH A 105 705 173 HOH HOH . M 5 HOH A 106 706 139 HOH HOH . M 5 HOH A 107 707 49 HOH HOH . M 5 HOH A 108 708 90 HOH HOH . M 5 HOH A 109 709 86 HOH HOH . N 5 HOH B 1 601 149 HOH HOH . N 5 HOH B 2 602 71 HOH HOH . N 5 HOH B 3 603 155 HOH HOH . N 5 HOH B 4 604 158 HOH HOH . N 5 HOH B 5 605 26 HOH HOH . N 5 HOH B 6 606 109 HOH HOH . N 5 HOH B 7 607 41 HOH HOH . N 5 HOH B 8 608 64 HOH HOH . N 5 HOH B 9 609 55 HOH HOH . N 5 HOH B 10 610 48 HOH HOH . N 5 HOH B 11 611 57 HOH HOH . N 5 HOH B 12 612 4 HOH HOH . N 5 HOH B 13 613 94 HOH HOH . N 5 HOH B 14 614 128 HOH HOH . N 5 HOH B 15 615 13 HOH HOH . N 5 HOH B 16 616 106 HOH HOH . N 5 HOH B 17 617 171 HOH HOH . N 5 HOH B 18 618 140 HOH HOH . N 5 HOH B 19 619 53 HOH HOH . N 5 HOH B 20 620 143 HOH HOH . N 5 HOH B 21 621 111 HOH HOH . N 5 HOH B 22 622 21 HOH HOH . N 5 HOH B 23 623 117 HOH HOH . N 5 HOH B 24 624 54 HOH HOH . N 5 HOH B 25 625 114 HOH HOH . N 5 HOH B 26 626 18 HOH HOH . N 5 HOH B 27 627 8 HOH HOH . N 5 HOH B 28 628 59 HOH HOH . N 5 HOH B 29 629 122 HOH HOH . N 5 HOH B 30 630 75 HOH HOH . N 5 HOH B 31 631 38 HOH HOH . N 5 HOH B 32 632 112 HOH HOH . N 5 HOH B 33 633 116 HOH HOH . N 5 HOH B 34 634 42 HOH HOH . N 5 HOH B 35 635 63 HOH HOH . N 5 HOH B 36 636 17 HOH HOH . N 5 HOH B 37 637 119 HOH HOH . N 5 HOH B 38 638 156 HOH HOH . N 5 HOH B 39 639 133 HOH HOH . N 5 HOH B 40 640 121 HOH HOH . N 5 HOH B 41 641 24 HOH HOH . N 5 HOH B 42 642 51 HOH HOH . N 5 HOH B 43 643 151 HOH HOH . N 5 HOH B 44 644 25 HOH HOH . N 5 HOH B 45 645 142 HOH HOH . N 5 HOH B 46 646 33 HOH HOH . N 5 HOH B 47 647 74 HOH HOH . N 5 HOH B 48 648 145 HOH HOH . N 5 HOH B 49 649 39 HOH HOH . N 5 HOH B 50 650 152 HOH HOH . N 5 HOH B 51 651 32 HOH HOH . N 5 HOH B 52 652 34 HOH HOH . N 5 HOH B 53 653 163 HOH HOH . N 5 HOH B 54 654 77 HOH HOH . N 5 HOH B 55 655 160 HOH HOH . N 5 HOH B 56 656 167 HOH HOH . N 5 HOH B 57 657 162 HOH HOH . N 5 HOH B 58 658 45 HOH HOH . N 5 HOH B 59 659 127 HOH HOH . N 5 HOH B 60 660 175 HOH HOH . N 5 HOH B 61 661 110 HOH HOH . N 5 HOH B 62 662 124 HOH HOH . N 5 HOH B 63 663 132 HOH HOH . N 5 HOH B 64 664 123 HOH HOH . N 5 HOH B 65 665 138 HOH HOH . N 5 HOH B 66 666 102 HOH HOH . N 5 HOH B 67 667 166 HOH HOH . N 5 HOH B 68 668 87 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 13.803 23.8 -2.882 1 66.93 0 C1 GOL 502 A 1 HETATM 2 O O1 GOL . . . D 3 13.561 24.663 -3.99 1 86.21 0 O1 GOL 502 A 1 HETATM 3 C C2 GOL . . . D 3 14.976 22.933 -3.229 1 67.3 0 C2 GOL 502 A 1 HETATM 4 O O2 GOL . . . D 3 15.98 23.824 -3.692 1 66.03 0 O2 GOL 502 A 1 HETATM 5 C C3 GOL . . . D 3 15.523 22.068 -2.117 1 62.55 0 C3 GOL 502 A 1 HETATM 6 O O3 GOL . . . D 3 16.827 21.549 -2.399 1 63.02 0 O3 GOL 502 A 1 HETATM 7 H H11 GOL . . . D 3 13.008 23.24 -2.707 1 70.46 0 H11 GOL 502 A 1 HETATM 8 H H12 GOL . . . D 3 14.007 24.335 -2.076 1 70.39 0 H12 GOL 502 A 1 HETATM 9 H HO1 GOL . . . D 3 12.768 25.083 -3.687 0 79.32 0 HO1 GOL 502 A 1 HETATM 10 H H2 GOL . . . D 3 14.712 22.343 -3.975 1 66.69 0 H2 GOL 502 A 1 HETATM 11 H HO2 GOL . . . D 3 16.741 23.601 -3.354 0 55.94 0 HO2 GOL 502 A 1 HETATM 12 H H31 GOL . . . D 3 14.904 21.313 -1.965 1 63.3 0 H31 GOL 502 A 1 HETATM 13 H H32 GOL . . . D 3 15.563 22.602 -1.287 1 62.73 0 H32 GOL 502 A 1 HETATM 14 H HO3 GOL . . . D 3 17.069 21.813 -3.165 1 63.57 0 HO3 GOL 502 A 1 # _model_server_stats.io_time_ms 105 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #