data_8PBS # _model_server_result.job_id zxOPBqCojx95RmyBB07CQA _model_server_result.datetime_utc '2024-11-28 05:28:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pbs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1904}' # _entry.id 8PBS # _exptl.entry_id 8PBS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8PBS _cell.length_a 80.252 _cell.length_b 159.316 _cell.length_c 60.822 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PBS _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_554 -x,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 0 -30.411 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 237 A CYS 1696 1_555 A SG CYS 237 A CYS 1696 3_454 ? A ? ? A ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 237 A CYS 1696 1_555 A SG CYS 237 A CYS 1696 3_454 ? B ? ? B ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A C LEU 96 A LEU 1555 1_555 A N KCX 97 A KCX 1556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C KCX 97 A KCX 1556 1_555 A N LEU 98 A LEU 1557 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 A NE2 HIS 12 A HIS 1471 1_555 C ZN ZN . A ZN 1902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.926 ? metalc ? metalc2 A NE2 HIS 14 A HIS 1473 1_555 C ZN ZN . A ZN 1902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc3 A O GLU 65 A GLU 1524 1_555 G ZN ZN . A ZN 1906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc4 A ND1 HIS 131 A HIS 1590 1_555 D ZN ZN . A ZN 1903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc5 A NE2 HIS 155 A HIS 1614 1_555 D ZN ZN . A ZN 1903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc6 A OD1 ASP 227 A ASP 1686 1_555 C ZN ZN . A ZN 1902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc7 A ND1 HIS 231 A HIS 1690 1_555 F ZN ZN . A ZN 1905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc8 A OE1 GLU 235 A GLU 1694 1_555 F ZN ZN . A ZN 1905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc9 A NE2 HIS 275 A HIS 1734 1_555 E ZN ZN . A ZN 1904 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc10 A ND1 HIS 282 A HIS 1741 1_555 E ZN ZN . A ZN 1904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc11 A OD1 ASP 294 A ASP 1753 1_555 H ZN ZN . A ZN 1907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? metalc ? metalc12 A NE2 HIS 297 A HIS 1756 1_555 H ZN ZN . A ZN 1907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc13 A O GLY 345 A GLY 1804 1_555 G ZN ZN . A ZN 1906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc14 A O GLY 347 A GLY 1806 1_555 G ZN ZN . A ZN 1906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc15 C ZN ZN . A ZN 1902 1_555 L O HOH . A HOH 2036 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? metalc ? metalc16 D ZN ZN . A ZN 1903 1_555 L O HOH . A HOH 2036 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc17 E ZN ZN . A ZN 1904 1_555 K O2 FMT . A FMT 1910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc18 E ZN ZN . A ZN 1904 1_555 L O HOH . A HOH 2050 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc19 F ZN ZN . A ZN 1905 1_555 L O HOH . A HOH 2049 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8PBS _atom_sites.fract_transf_matrix[1][1] 0.012461 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006277 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016441 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 1901 1901 GOL GOL . C 3 ZN A 1 1902 1 ZN ZN . D 3 ZN A 1 1903 2 ZN ZN . E 3 ZN A 1 1904 3 ZN ZN . F 3 ZN A 1 1905 4 ZN ZN . G 3 ZN A 1 1906 5 ZN ZN . H 3 ZN A 1 1907 6 ZN ZN . I 4 FMT A 1 1908 4 FMT FMT . J 4 FMT A 1 1909 5 FMT FMT . K 4 FMT A 1 1910 6 FMT FMT . L 5 HOH A 1 2001 9 HOH HOH . L 5 HOH A 2 2002 41 HOH HOH . L 5 HOH A 3 2003 63 HOH HOH . L 5 HOH A 4 2004 59 HOH HOH . L 5 HOH A 5 2005 6 HOH HOH . L 5 HOH A 6 2006 42 HOH HOH . L 5 HOH A 7 2007 29 HOH HOH . L 5 HOH A 8 2008 45 HOH HOH . L 5 HOH A 9 2009 78 HOH HOH . L 5 HOH A 10 2010 48 HOH HOH . L 5 HOH A 11 2011 10 HOH HOH . L 5 HOH A 12 2012 47 HOH HOH . L 5 HOH A 13 2013 5 HOH HOH . L 5 HOH A 14 2014 16 HOH HOH . L 5 HOH A 15 2015 60 HOH HOH . L 5 HOH A 16 2016 49 HOH HOH . L 5 HOH A 17 2017 4 HOH HOH . L 5 HOH A 18 2018 61 HOH HOH . L 5 HOH A 19 2019 14 HOH HOH . L 5 HOH A 20 2020 79 HOH HOH . L 5 HOH A 21 2021 72 HOH HOH . L 5 HOH A 22 2022 1 HOH HOH . L 5 HOH A 23 2023 12 HOH HOH . L 5 HOH A 24 2024 23 HOH HOH . L 5 HOH A 25 2025 62 HOH HOH . L 5 HOH A 26 2026 18 HOH HOH . L 5 HOH A 27 2027 76 HOH HOH . L 5 HOH A 28 2028 11 HOH HOH . L 5 HOH A 29 2029 3 HOH HOH . L 5 HOH A 30 2030 44 HOH HOH . L 5 HOH A 31 2031 19 HOH HOH . L 5 HOH A 32 2032 32 HOH HOH . L 5 HOH A 33 2033 28 HOH HOH . L 5 HOH A 34 2034 15 HOH HOH . L 5 HOH A 35 2035 39 HOH HOH . L 5 HOH A 36 2036 52 HOH HOH . L 5 HOH A 37 2037 2 HOH HOH . L 5 HOH A 38 2038 21 HOH HOH . L 5 HOH A 39 2039 82 HOH HOH . L 5 HOH A 40 2040 65 HOH HOH . L 5 HOH A 41 2041 43 HOH HOH . L 5 HOH A 42 2042 13 HOH HOH . L 5 HOH A 43 2043 40 HOH HOH . L 5 HOH A 44 2044 46 HOH HOH . L 5 HOH A 45 2045 81 HOH HOH . L 5 HOH A 46 2046 80 HOH HOH . L 5 HOH A 47 2047 8 HOH HOH . L 5 HOH A 48 2048 74 HOH HOH . L 5 HOH A 49 2049 77 HOH HOH . L 5 HOH A 50 2050 34 HOH HOH . L 5 HOH A 51 2051 20 HOH HOH . L 5 HOH A 52 2052 56 HOH HOH . L 5 HOH A 53 2053 27 HOH HOH . L 5 HOH A 54 2054 75 HOH HOH . L 5 HOH A 55 2055 31 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 0.877 _atom_site.Cartn_y -24.49 _atom_site.Cartn_z -7.837 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 30.7 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1904 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #