data_8PBS
#
_model_server_result.job_id            z-LObuUhbn-EyXKFiaDjdA 
_model_server_result.datetime_utc      '2024-11-24 12:41:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8pbs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":1910}' 
#
_entry.id    8PBS 
#
_exptl.entry_id    8PBS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              46.025 
_entity.id                          4 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            'FORMIC ACID' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8PBS 
_cell.length_a            80.252 
_cell.length_b            159.316 
_cell.length_c            60.822 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8PBS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    'C 2c 2' 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_554 -x,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 0 -30.411 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 I N N 
? 4 J N N 
? 4 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 237 A CYS 1696 1_555 A SG CYS 237 A CYS 1696 3_454 ? A ? ? A ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 237 A CYS 1696 1_555 A SG CYS 237 A CYS 1696 3_454 ? B ? ? B ? ? ? ? ? ? ? 2.031 ? 
covale ? covale1 A C LEU 96 A LEU 1555 1_555 A N KCX 97 A KCX 1556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 A C KCX 97 A KCX 1556 1_555 A N LEU 98 A LEU 1557 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
metalc ? metalc1 A NE2 HIS 12 A HIS 1471 1_555 C ZN ZN . A ZN 1902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.926 ? 
metalc ? metalc2 A NE2 HIS 14 A HIS 1473 1_555 C ZN ZN . A ZN 1902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? 
metalc ? metalc3 A O GLU 65 A GLU 1524 1_555 G ZN ZN . A ZN 1906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? 
metalc ? metalc4 A ND1 HIS 131 A HIS 1590 1_555 D ZN ZN . A ZN 1903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
metalc ? metalc5 A NE2 HIS 155 A HIS 1614 1_555 D ZN ZN . A ZN 1903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
metalc ? metalc6 A OD1 ASP 227 A ASP 1686 1_555 C ZN ZN . A ZN 1902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? 
metalc ? metalc7 A ND1 HIS 231 A HIS 1690 1_555 F ZN ZN . A ZN 1905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
metalc ? metalc8 A OE1 GLU 235 A GLU 1694 1_555 F ZN ZN . A ZN 1905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? 
metalc ? metalc9 A NE2 HIS 275 A HIS 1734 1_555 E ZN ZN . A ZN 1904 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
metalc ? metalc10 A ND1 HIS 282 A HIS 1741 1_555 E ZN ZN . A ZN 1904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
metalc ? metalc11 A OD1 ASP 294 A ASP 1753 1_555 H ZN ZN . A ZN 1907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? 
metalc ? metalc12 A NE2 HIS 297 A HIS 1756 1_555 H ZN ZN . A ZN 1907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
metalc ? metalc13 A O GLY 345 A GLY 1804 1_555 G ZN ZN . A ZN 1906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? 
metalc ? metalc14 A O GLY 347 A GLY 1806 1_555 G ZN ZN . A ZN 1906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? 
metalc ? metalc15 C ZN ZN . A ZN 1902 1_555 L O HOH . A HOH 2036 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? 
metalc ? metalc16 D ZN ZN . A ZN 1903 1_555 L O HOH . A HOH 2036 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc17 E ZN ZN . A ZN 1904 1_555 K O2 FMT . A FMT 1910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? 
metalc ? metalc18 E ZN ZN . A ZN 1904 1_555 L O HOH . A HOH 2050 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc19 F ZN ZN . A ZN 1905 1_555 L O HOH . A HOH 2049 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? 
#
_chem_comp.formula           'C H2 O2' 
_chem_comp.formula_weight    46.025 
_chem_comp.id                FMT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FORMIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O1 FMT doub 83 n n 
C O2 FMT sing 84 n n 
C H FMT sing 85 n n 
O2 HO2 FMT sing 86 n n 
#
_atom_sites.entry_id                     8PBS 
_atom_sites.fract_transf_matrix[1][1]    0.012461 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006277 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016441 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 1901 1901 GOL GOL . 
C 3 ZN A 1 1902 1 ZN ZN . 
D 3 ZN A 1 1903 2 ZN ZN . 
E 3 ZN A 1 1904 3 ZN ZN . 
F 3 ZN A 1 1905 4 ZN ZN . 
G 3 ZN A 1 1906 5 ZN ZN . 
H 3 ZN A 1 1907 6 ZN ZN . 
I 4 FMT A 1 1908 4 FMT FMT . 
J 4 FMT A 1 1909 5 FMT FMT . 
K 4 FMT A 1 1910 6 FMT FMT . 
L 5 HOH A 1 2001 9 HOH HOH . 
L 5 HOH A 2 2002 41 HOH HOH . 
L 5 HOH A 3 2003 63 HOH HOH . 
L 5 HOH A 4 2004 59 HOH HOH . 
L 5 HOH A 5 2005 6 HOH HOH . 
L 5 HOH A 6 2006 42 HOH HOH . 
L 5 HOH A 7 2007 29 HOH HOH . 
L 5 HOH A 8 2008 45 HOH HOH . 
L 5 HOH A 9 2009 78 HOH HOH . 
L 5 HOH A 10 2010 48 HOH HOH . 
L 5 HOH A 11 2011 10 HOH HOH . 
L 5 HOH A 12 2012 47 HOH HOH . 
L 5 HOH A 13 2013 5 HOH HOH . 
L 5 HOH A 14 2014 16 HOH HOH . 
L 5 HOH A 15 2015 60 HOH HOH . 
L 5 HOH A 16 2016 49 HOH HOH . 
L 5 HOH A 17 2017 4 HOH HOH . 
L 5 HOH A 18 2018 61 HOH HOH . 
L 5 HOH A 19 2019 14 HOH HOH . 
L 5 HOH A 20 2020 79 HOH HOH . 
L 5 HOH A 21 2021 72 HOH HOH . 
L 5 HOH A 22 2022 1 HOH HOH . 
L 5 HOH A 23 2023 12 HOH HOH . 
L 5 HOH A 24 2024 23 HOH HOH . 
L 5 HOH A 25 2025 62 HOH HOH . 
L 5 HOH A 26 2026 18 HOH HOH . 
L 5 HOH A 27 2027 76 HOH HOH . 
L 5 HOH A 28 2028 11 HOH HOH . 
L 5 HOH A 29 2029 3 HOH HOH . 
L 5 HOH A 30 2030 44 HOH HOH . 
L 5 HOH A 31 2031 19 HOH HOH . 
L 5 HOH A 32 2032 32 HOH HOH . 
L 5 HOH A 33 2033 28 HOH HOH . 
L 5 HOH A 34 2034 15 HOH HOH . 
L 5 HOH A 35 2035 39 HOH HOH . 
L 5 HOH A 36 2036 52 HOH HOH . 
L 5 HOH A 37 2037 2 HOH HOH . 
L 5 HOH A 38 2038 21 HOH HOH . 
L 5 HOH A 39 2039 82 HOH HOH . 
L 5 HOH A 40 2040 65 HOH HOH . 
L 5 HOH A 41 2041 43 HOH HOH . 
L 5 HOH A 42 2042 13 HOH HOH . 
L 5 HOH A 43 2043 40 HOH HOH . 
L 5 HOH A 44 2044 46 HOH HOH . 
L 5 HOH A 45 2045 81 HOH HOH . 
L 5 HOH A 46 2046 80 HOH HOH . 
L 5 HOH A 47 2047 8 HOH HOH . 
L 5 HOH A 48 2048 74 HOH HOH . 
L 5 HOH A 49 2049 77 HOH HOH . 
L 5 HOH A 50 2050 34 HOH HOH . 
L 5 HOH A 51 2051 20 HOH HOH . 
L 5 HOH A 52 2052 56 HOH HOH . 
L 5 HOH A 53 2053 27 HOH HOH . 
L 5 HOH A 54 2054 75 HOH HOH . 
L 5 HOH A 55 2055 31 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C FMT . . . K 4 0.26 -27.047 -6.832 1 38.44 ? C FMT 1910 A 1 
HETATM 2 O O1 FMT . . . K 4 -0.271 -27.944 -6.175 1 43.12 ? O1 FMT 1910 A 1 
HETATM 3 O O2 FMT . . . K 4 -0.18 -26.695 -7.928 1 37.97 ? O2 FMT 1910 A 1 
HETATM 4 H H FMT . . . K 4 1.161 -26.555 -6.469 1 46.21 ? H FMT 1910 A 1 
HETATM 5 H HO2 FMT . . . K 4 -0.977 -27.129 -8.299 1 45.65 ? HO2 FMT 1910 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           5 
#