data_8PC7
#
_model_server_result.job_id            HjayC1FBhnu_7kPkfSC_0g 
_model_server_result.datetime_utc      '2025-01-17 14:58:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8pc7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":401}' 
#
_entry.id    8PC7 
#
_exptl.entry_id    8PC7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          111.93 
_cell.angle_gamma         90 
_cell.entry_id            8PC7 
_cell.length_a            56.755 
_cell.length_b            189.39 
_cell.length_c            75.954 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8PC7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,O 1 1 
B,G,H,P 1 2 
C,I,J,K,L,Q 2 1 
D,M,N,R 2 3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 1_455 x-1,y,z 1 0 0 0 1 0 0 0 1 -56.755 0 0 
3 'crystal symmetry operation' 1_655 x+1,y,z 1 0 0 0 1 0 0 0 1 56.755 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 J N N 
? 4 K N N 
? 4 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OG SER 211 A SER 192 1_555 F P01 ZK8 . A ZK8 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.63 ? 
covale ? covale2 B OG SER 211 B SER 192 1_555 H P01 ZK8 . B ZK8 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.629 ? 
covale ? covale3 C OG SER 211 C SER 192 1_555 L P01 ZK8 . C ZK8 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.663 ? 
covale ? covale4 D OG SER 211 D SER 192 1_555 N P01 ZK8 . D ZK8 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.634 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     8PC7 
_atom_sites.fract_transf_matrix[1][1]    0.01762 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007092 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00528 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014192 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 PEG A 1 401 401 PEG PEG . 
F 3 ZK8 A 1 402 192 ZK8 141 . 
G 2 PEG B 1 401 401 PEG PEG . 
H 3 ZK8 B 1 402 192 ZK8 141 . 
I 2 PEG C 1 401 401 PEG PEG . 
J 4 GOL C 1 402 501 GOL GOL . 
K 4 GOL C 1 403 601 GOL GOL . 
L 3 ZK8 C 1 404 192 ZK8 141 . 
M 4 GOL D 1 401 401 GOL GOL . 
N 3 ZK8 D 1 402 192 ZK8 141 . 
O 5 HOH A 1 501 1 HOH HOH . 
O 5 HOH A 2 502 11 HOH HOH . 
O 5 HOH A 3 503 78 HOH HOH . 
O 5 HOH A 4 504 47 HOH HOH . 
O 5 HOH A 5 505 41 HOH HOH . 
O 5 HOH A 6 506 82 HOH HOH . 
O 5 HOH A 7 507 38 HOH HOH . 
O 5 HOH A 8 508 31 HOH HOH . 
O 5 HOH A 9 509 9 HOH HOH . 
O 5 HOH A 10 510 21 HOH HOH . 
O 5 HOH A 11 511 3 HOH HOH . 
O 5 HOH A 12 512 7 HOH HOH . 
O 5 HOH A 13 513 15 HOH HOH . 
O 5 HOH A 14 514 2 HOH HOH . 
O 5 HOH A 15 515 5 HOH HOH . 
O 5 HOH A 16 516 35 HOH HOH . 
O 5 HOH A 17 517 46 HOH HOH . 
O 5 HOH A 18 518 30 HOH HOH . 
O 5 HOH A 19 519 37 HOH HOH . 
O 5 HOH A 20 520 34 HOH HOH . 
O 5 HOH A 21 521 12 HOH HOH . 
O 5 HOH A 22 522 77 HOH HOH . 
O 5 HOH A 23 523 43 HOH HOH . 
O 5 HOH A 24 524 121 HOH HOH . 
O 5 HOH A 25 525 76 HOH HOH . 
O 5 HOH A 26 526 42 HOH HOH . 
O 5 HOH A 27 527 20 HOH HOH . 
O 5 HOH A 28 528 40 HOH HOH . 
O 5 HOH A 29 529 32 HOH HOH . 
O 5 HOH A 30 530 124 HOH HOH . 
O 5 HOH A 31 531 80 HOH HOH . 
O 5 HOH A 32 532 33 HOH HOH . 
O 5 HOH A 33 533 45 HOH HOH . 
O 5 HOH A 34 534 29 HOH HOH . 
O 5 HOH A 35 535 25 HOH HOH . 
O 5 HOH A 36 536 22 HOH HOH . 
O 5 HOH A 37 537 102 HOH HOH . 
O 5 HOH A 38 538 81 HOH HOH . 
O 5 HOH A 39 539 79 HOH HOH . 
O 5 HOH A 40 540 83 HOH HOH . 
O 5 HOH A 41 541 36 HOH HOH . 
O 5 HOH A 42 542 39 HOH HOH . 
P 5 HOH B 1 501 84 HOH HOH . 
P 5 HOH B 2 502 89 HOH HOH . 
P 5 HOH B 3 503 8 HOH HOH . 
P 5 HOH B 4 504 44 HOH HOH . 
P 5 HOH B 5 505 86 HOH HOH . 
P 5 HOH B 6 506 13 HOH HOH . 
P 5 HOH B 7 507 51 HOH HOH . 
P 5 HOH B 8 508 48 HOH HOH . 
P 5 HOH B 9 509 4 HOH HOH . 
P 5 HOH B 10 510 88 HOH HOH . 
P 5 HOH B 11 511 52 HOH HOH . 
P 5 HOH B 12 512 28 HOH HOH . 
P 5 HOH B 13 513 6 HOH HOH . 
P 5 HOH B 14 514 50 HOH HOH . 
P 5 HOH B 15 515 10 HOH HOH . 
P 5 HOH B 16 516 23 HOH HOH . 
P 5 HOH B 17 517 19 HOH HOH . 
P 5 HOH B 18 518 74 HOH HOH . 
P 5 HOH B 19 519 14 HOH HOH . 
P 5 HOH B 20 520 103 HOH HOH . 
P 5 HOH B 21 521 75 HOH HOH . 
P 5 HOH B 22 522 104 HOH HOH . 
P 5 HOH B 23 523 24 HOH HOH . 
P 5 HOH B 24 524 49 HOH HOH . 
P 5 HOH B 25 525 105 HOH HOH . 
P 5 HOH B 26 526 27 HOH HOH . 
P 5 HOH B 27 527 26 HOH HOH . 
P 5 HOH B 28 528 85 HOH HOH . 
P 5 HOH B 29 529 90 HOH HOH . 
P 5 HOH B 30 530 18 HOH HOH . 
Q 5 HOH C 1 501 94 HOH HOH . 
Q 5 HOH C 2 502 17 HOH HOH . 
Q 5 HOH C 3 503 55 HOH HOH . 
Q 5 HOH C 4 504 53 HOH HOH . 
Q 5 HOH C 5 505 59 HOH HOH . 
Q 5 HOH C 6 506 60 HOH HOH . 
Q 5 HOH C 7 507 72 HOH HOH . 
Q 5 HOH C 8 508 63 HOH HOH . 
Q 5 HOH C 9 509 111 HOH HOH . 
Q 5 HOH C 10 510 87 HOH HOH . 
Q 5 HOH C 11 511 58 HOH HOH . 
Q 5 HOH C 12 512 107 HOH HOH . 
Q 5 HOH C 13 513 97 HOH HOH . 
Q 5 HOH C 14 514 73 HOH HOH . 
Q 5 HOH C 15 515 56 HOH HOH . 
Q 5 HOH C 16 516 95 HOH HOH . 
Q 5 HOH C 17 517 93 HOH HOH . 
Q 5 HOH C 18 518 62 HOH HOH . 
Q 5 HOH C 19 519 110 HOH HOH . 
Q 5 HOH C 20 520 106 HOH HOH . 
Q 5 HOH C 21 521 57 HOH HOH . 
Q 5 HOH C 22 522 109 HOH HOH . 
Q 5 HOH C 23 523 64 HOH HOH . 
Q 5 HOH C 24 524 54 HOH HOH . 
Q 5 HOH C 25 525 108 HOH HOH . 
Q 5 HOH C 26 526 96 HOH HOH . 
R 5 HOH D 1 501 101 HOH HOH . 
R 5 HOH D 2 502 68 HOH HOH . 
R 5 HOH D 3 503 16 HOH HOH . 
R 5 HOH D 4 504 118 HOH HOH . 
R 5 HOH D 5 505 100 HOH HOH . 
R 5 HOH D 6 506 70 HOH HOH . 
R 5 HOH D 7 507 114 HOH HOH . 
R 5 HOH D 8 508 67 HOH HOH . 
R 5 HOH D 9 509 69 HOH HOH . 
R 5 HOH D 10 510 113 HOH HOH . 
R 5 HOH D 11 511 119 HOH HOH . 
R 5 HOH D 12 512 98 HOH HOH . 
R 5 HOH D 13 513 117 HOH HOH . 
R 5 HOH D 14 514 65 HOH HOH . 
R 5 HOH D 15 515 71 HOH HOH . 
R 5 HOH D 16 516 115 HOH HOH . 
R 5 HOH D 17 517 66 HOH HOH . 
R 5 HOH D 18 518 112 HOH HOH . 
R 5 HOH D 19 519 123 HOH HOH . 
R 5 HOH D 20 520 122 HOH HOH . 
R 5 HOH D 21 521 116 HOH HOH . 
R 5 HOH D 22 522 99 HOH HOH . 
R 5 HOH D 23 523 61 HOH HOH . 
R 5 HOH D 24 524 91 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . M 4 -55.706 -29.208 68.587 1 55.28 ? C1 GOL 401 D 1 
HETATM 2 O O1 GOL . . . M 4 -55.941 -29.045 69.982 1 57.04 ? O1 GOL 401 D 1 
HETATM 3 C C2 GOL . . . M 4 -56.818 -28.586 67.772 1 55.64 ? C2 GOL 401 D 1 
HETATM 4 O O2 GOL . . . M 4 -58.049 -29.248 68.06 1 56.12 ? O2 GOL 401 D 1 
HETATM 5 C C3 GOL . . . M 4 -56.564 -28.615 66.28 1 54.38 ? C3 GOL 401 D 1 
HETATM 6 O O3 GOL . . . M 4 -55.365 -27.931 65.927 1 52.58 ? O3 GOL 401 D 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    52 
_model_server_stats.query_time_ms           414 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           6 
#