data_8PCF # _model_server_result.job_id O38cxeE4CdPkv9dt8wVBDw _model_server_result.datetime_utc '2024-11-23 06:09:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pcf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 8PCF # _exptl.entry_id 8PCF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.84 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BORATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8PCF _cell.length_a 41.84 _cell.length_b 41.84 _cell.length_c 233.28 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PCF _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 45 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 70 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id B _struct_conn.ptnr2_label_comp_id BO4 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id BO4 _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id B _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.422 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'B H4 O4 -1' _chem_comp.formula_weight 78.84 _chem_comp.id BO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'BORATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag B O1 BO4 sing 70 n n B O2 BO4 sing 71 n n B O3 BO4 sing 72 n n B O4 BO4 sing 73 n n O1 HO1 BO4 sing 74 n n O2 HO2 BO4 sing 75 n n O3 HO3 BO4 sing 76 n n O4 HO4 BO4 sing 77 n n # _atom_sites.entry_id 8PCF _atom_sites.fract_transf_matrix[1][1] 0.023901 _atom_sites.fract_transf_matrix[1][2] 0.013799 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027598 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004287 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BO4 A 1 301 302 BO4 BAB . C 3 SO4 A 1 302 1 SO4 SO4 . D 4 HOH A 1 401 366 HOH HOH . D 4 HOH A 2 402 224 HOH HOH . D 4 HOH A 3 403 337 HOH HOH . D 4 HOH A 4 404 44 HOH HOH . D 4 HOH A 5 405 361 HOH HOH . D 4 HOH A 6 406 69 HOH HOH . D 4 HOH A 7 407 153 HOH HOH . D 4 HOH A 8 408 118 HOH HOH . D 4 HOH A 9 409 50 HOH HOH . D 4 HOH A 10 410 328 HOH HOH . D 4 HOH A 11 411 191 HOH HOH . D 4 HOH A 12 412 353 HOH HOH . D 4 HOH A 13 413 80 HOH HOH . D 4 HOH A 14 414 251 HOH HOH . D 4 HOH A 15 415 174 HOH HOH . D 4 HOH A 16 416 340 HOH HOH . D 4 HOH A 17 417 181 HOH HOH . D 4 HOH A 18 418 51 HOH HOH . D 4 HOH A 19 419 175 HOH HOH . D 4 HOH A 20 420 252 HOH HOH . D 4 HOH A 21 421 92 HOH HOH . D 4 HOH A 22 422 57 HOH HOH . D 4 HOH A 23 423 303 HOH HOH . D 4 HOH A 24 424 10 HOH HOH . D 4 HOH A 25 425 318 HOH HOH . D 4 HOH A 26 426 45 HOH HOH . D 4 HOH A 27 427 214 HOH HOH . D 4 HOH A 28 428 238 HOH HOH . D 4 HOH A 29 429 348 HOH HOH . D 4 HOH A 30 430 338 HOH HOH . D 4 HOH A 31 431 216 HOH HOH . D 4 HOH A 32 432 208 HOH HOH . D 4 HOH A 33 433 210 HOH HOH . D 4 HOH A 34 434 198 HOH HOH . D 4 HOH A 35 435 178 HOH HOH . D 4 HOH A 36 436 1 HOH HOH . D 4 HOH A 37 437 207 HOH HOH . D 4 HOH A 38 438 48 HOH HOH . D 4 HOH A 39 439 63 HOH HOH . D 4 HOH A 40 440 53 HOH HOH . D 4 HOH A 41 441 82 HOH HOH . D 4 HOH A 42 442 309 HOH HOH . D 4 HOH A 43 443 289 HOH HOH . D 4 HOH A 44 444 65 HOH HOH . D 4 HOH A 45 445 30 HOH HOH . D 4 HOH A 46 446 93 HOH HOH . D 4 HOH A 47 447 173 HOH HOH . D 4 HOH A 48 448 13 HOH HOH . D 4 HOH A 49 449 70 HOH HOH . D 4 HOH A 50 450 46 HOH HOH . D 4 HOH A 51 451 32 HOH HOH . D 4 HOH A 52 452 9 HOH HOH . D 4 HOH A 53 453 94 HOH HOH . D 4 HOH A 54 454 76 HOH HOH . D 4 HOH A 55 455 339 HOH HOH . D 4 HOH A 56 456 29 HOH HOH . D 4 HOH A 57 457 273 HOH HOH . D 4 HOH A 58 458 8 HOH HOH . D 4 HOH A 59 459 36 HOH HOH . D 4 HOH A 60 460 21 HOH HOH . D 4 HOH A 61 461 18 HOH HOH . D 4 HOH A 62 462 281 HOH HOH . D 4 HOH A 63 463 35 HOH HOH . D 4 HOH A 64 464 351 HOH HOH . D 4 HOH A 65 465 4 HOH HOH . D 4 HOH A 66 466 84 HOH HOH . D 4 HOH A 67 467 5 HOH HOH . D 4 HOH A 68 468 347 HOH HOH . D 4 HOH A 69 469 344 HOH HOH . D 4 HOH A 70 470 3 HOH HOH . D 4 HOH A 71 471 33 HOH HOH . D 4 HOH A 72 472 95 HOH HOH . D 4 HOH A 73 473 79 HOH HOH . D 4 HOH A 74 474 182 HOH HOH . D 4 HOH A 75 475 179 HOH HOH . D 4 HOH A 76 476 349 HOH HOH . D 4 HOH A 77 477 177 HOH HOH . D 4 HOH A 78 478 183 HOH HOH . D 4 HOH A 79 479 276 HOH HOH . D 4 HOH A 80 480 2 HOH HOH . D 4 HOH A 81 481 28 HOH HOH . D 4 HOH A 82 482 22 HOH HOH . D 4 HOH A 83 483 16 HOH HOH . D 4 HOH A 84 484 148 HOH HOH . D 4 HOH A 85 485 110 HOH HOH . D 4 HOH A 86 486 260 HOH HOH . D 4 HOH A 87 487 185 HOH HOH . D 4 HOH A 88 488 220 HOH HOH . D 4 HOH A 89 489 232 HOH HOH . D 4 HOH A 90 490 241 HOH HOH . D 4 HOH A 91 491 6 HOH HOH . D 4 HOH A 92 492 55 HOH HOH . D 4 HOH A 93 493 87 HOH HOH . D 4 HOH A 94 494 164 HOH HOH . D 4 HOH A 95 495 219 HOH HOH . D 4 HOH A 96 496 7 HOH HOH . D 4 HOH A 97 497 83 HOH HOH . D 4 HOH A 98 498 60 HOH HOH . D 4 HOH A 99 499 71 HOH HOH . D 4 HOH A 100 500 247 HOH HOH . D 4 HOH A 101 501 34 HOH HOH . D 4 HOH A 102 502 27 HOH HOH . D 4 HOH A 103 503 26 HOH HOH . D 4 HOH A 104 504 11 HOH HOH . D 4 HOH A 105 505 206 HOH HOH . D 4 HOH A 106 506 38 HOH HOH . D 4 HOH A 107 507 58 HOH HOH . D 4 HOH A 108 508 165 HOH HOH . D 4 HOH A 109 509 67 HOH HOH . D 4 HOH A 110 510 176 HOH HOH . D 4 HOH A 111 511 187 HOH HOH . D 4 HOH A 112 512 156 HOH HOH . D 4 HOH A 113 513 24 HOH HOH . D 4 HOH A 114 514 259 HOH HOH . D 4 HOH A 115 515 272 HOH HOH . D 4 HOH A 116 516 213 HOH HOH . D 4 HOH A 117 517 25 HOH HOH . D 4 HOH A 118 518 85 HOH HOH . D 4 HOH A 119 519 258 HOH HOH . D 4 HOH A 120 520 336 HOH HOH . D 4 HOH A 121 521 310 HOH HOH . D 4 HOH A 122 522 15 HOH HOH . D 4 HOH A 123 523 39 HOH HOH . D 4 HOH A 124 524 17 HOH HOH . D 4 HOH A 125 525 12 HOH HOH . D 4 HOH A 126 526 72 HOH HOH . D 4 HOH A 127 527 41 HOH HOH . D 4 HOH A 128 528 274 HOH HOH . D 4 HOH A 129 529 180 HOH HOH . D 4 HOH A 130 530 154 HOH HOH . D 4 HOH A 131 531 42 HOH HOH . D 4 HOH A 132 532 56 HOH HOH . D 4 HOH A 133 533 147 HOH HOH . D 4 HOH A 134 534 159 HOH HOH . D 4 HOH A 135 535 194 HOH HOH . D 4 HOH A 136 536 266 HOH HOH . D 4 HOH A 137 537 81 HOH HOH . D 4 HOH A 138 538 61 HOH HOH . D 4 HOH A 139 539 261 HOH HOH . D 4 HOH A 140 540 280 HOH HOH . D 4 HOH A 141 541 186 HOH HOH . D 4 HOH A 142 542 74 HOH HOH . D 4 HOH A 143 543 47 HOH HOH . D 4 HOH A 144 544 184 HOH HOH . D 4 HOH A 145 545 327 HOH HOH . D 4 HOH A 146 546 23 HOH HOH . D 4 HOH A 147 547 268 HOH HOH . D 4 HOH A 148 548 226 HOH HOH . D 4 HOH A 149 549 64 HOH HOH . D 4 HOH A 150 550 242 HOH HOH . D 4 HOH A 151 551 288 HOH HOH . D 4 HOH A 152 552 122 HOH HOH . D 4 HOH A 153 553 255 HOH HOH . D 4 HOH A 154 554 364 HOH HOH . D 4 HOH A 155 555 123 HOH HOH . D 4 HOH A 156 556 278 HOH HOH . D 4 HOH A 157 557 37 HOH HOH . D 4 HOH A 158 558 14 HOH HOH . D 4 HOH A 159 559 31 HOH HOH . D 4 HOH A 160 560 315 HOH HOH . D 4 HOH A 161 561 19 HOH HOH . D 4 HOH A 162 562 296 HOH HOH . D 4 HOH A 163 563 253 HOH HOH . D 4 HOH A 164 564 54 HOH HOH . D 4 HOH A 165 565 99 HOH HOH . D 4 HOH A 166 566 350 HOH HOH . D 4 HOH A 167 567 257 HOH HOH . D 4 HOH A 168 568 275 HOH HOH . D 4 HOH A 169 569 40 HOH HOH . D 4 HOH A 170 570 283 HOH HOH . D 4 HOH A 171 571 20 HOH HOH . D 4 HOH A 172 572 203 HOH HOH . D 4 HOH A 173 573 233 HOH HOH . D 4 HOH A 174 574 342 HOH HOH . D 4 HOH A 175 575 133 HOH HOH . D 4 HOH A 176 576 209 HOH HOH . D 4 HOH A 177 577 117 HOH HOH . D 4 HOH A 178 578 262 HOH HOH . D 4 HOH A 179 579 234 HOH HOH . D 4 HOH A 180 580 113 HOH HOH . D 4 HOH A 181 581 151 HOH HOH . D 4 HOH A 182 582 330 HOH HOH . D 4 HOH A 183 583 196 HOH HOH . D 4 HOH A 184 584 264 HOH HOH . D 4 HOH A 185 585 135 HOH HOH . D 4 HOH A 186 586 352 HOH HOH . D 4 HOH A 187 587 248 HOH HOH . D 4 HOH A 188 588 317 HOH HOH . D 4 HOH A 189 589 201 HOH HOH . D 4 HOH A 190 590 279 HOH HOH . D 4 HOH A 191 591 265 HOH HOH . D 4 HOH A 192 592 149 HOH HOH . D 4 HOH A 193 593 300 HOH HOH . D 4 HOH A 194 594 114 HOH HOH . D 4 HOH A 195 595 199 HOH HOH . D 4 HOH A 196 596 246 HOH HOH . D 4 HOH A 197 597 230 HOH HOH . D 4 HOH A 198 598 190 HOH HOH . D 4 HOH A 199 599 256 HOH HOH . D 4 HOH A 200 600 287 HOH HOH . D 4 HOH A 201 601 228 HOH HOH . D 4 HOH A 202 602 200 HOH HOH . D 4 HOH A 203 603 311 HOH HOH . D 4 HOH A 204 604 365 HOH HOH . D 4 HOH A 205 605 105 HOH HOH . D 4 HOH A 206 606 271 HOH HOH . D 4 HOH A 207 607 229 HOH HOH . D 4 HOH A 208 608 109 HOH HOH . D 4 HOH A 209 609 211 HOH HOH . D 4 HOH A 210 610 155 HOH HOH . D 4 HOH A 211 611 305 HOH HOH . D 4 HOH A 212 612 326 HOH HOH . D 4 HOH A 213 613 225 HOH HOH . D 4 HOH A 214 614 293 HOH HOH . D 4 HOH A 215 615 227 HOH HOH . D 4 HOH A 216 616 221 HOH HOH . D 4 HOH A 217 617 197 HOH HOH . D 4 HOH A 218 618 204 HOH HOH . D 4 HOH A 219 619 193 HOH HOH . D 4 HOH A 220 620 218 HOH HOH . D 4 HOH A 221 621 49 HOH HOH . D 4 HOH A 222 622 205 HOH HOH . D 4 HOH A 223 623 239 HOH HOH . D 4 HOH A 224 624 363 HOH HOH . D 4 HOH A 225 625 215 HOH HOH . D 4 HOH A 226 626 334 HOH HOH . D 4 HOH A 227 627 301 HOH HOH . D 4 HOH A 228 628 160 HOH HOH . D 4 HOH A 229 629 73 HOH HOH . D 4 HOH A 230 630 254 HOH HOH . D 4 HOH A 231 631 282 HOH HOH . D 4 HOH A 232 632 195 HOH HOH . D 4 HOH A 233 633 294 HOH HOH . D 4 HOH A 234 634 236 HOH HOH . D 4 HOH A 235 635 322 HOH HOH . D 4 HOH A 236 636 78 HOH HOH . D 4 HOH A 237 637 291 HOH HOH . D 4 HOH A 238 638 66 HOH HOH . D 4 HOH A 239 639 189 HOH HOH . D 4 HOH A 240 640 286 HOH HOH . D 4 HOH A 241 641 127 HOH HOH . D 4 HOH A 242 642 104 HOH HOH . D 4 HOH A 243 643 304 HOH HOH . D 4 HOH A 244 644 240 HOH HOH . D 4 HOH A 245 645 152 HOH HOH . D 4 HOH A 246 646 298 HOH HOH . D 4 HOH A 247 647 212 HOH HOH . D 4 HOH A 248 648 297 HOH HOH . D 4 HOH A 249 649 188 HOH HOH . D 4 HOH A 250 650 299 HOH HOH . D 4 HOH A 251 651 314 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 B B BO4 . B . B 2 0.831 2.975 -19.402 0.36 26.76 ? B BO4 301 A 1 HETATM 2 O O1 BO4 . B . B 2 1.632 1.962 -19.785 0.36 26.17 ? O1 BO4 301 A 1 HETATM 3 O O2 BO4 . B . B 2 0.172 3.465 -20.47 0.36 39.13 ? O2 BO4 301 A 1 HETATM 4 O O3 BO4 . B . B 2 1.558 3.952 -18.823 0.36 21.31 ? O3 BO4 301 A 1 HETATM 5 H HO1 BO4 . B . B 2 2.501 2.102 -19.446 0.36 31.4 ? HO1 BO4 301 A 1 HETATM 6 H HO2 BO4 . B . B 2 0.341 4.389 -20.547 0.36 46.96 ? HO2 BO4 301 A 1 HETATM 7 H HO3 BO4 . B . B 2 1.534 3.848 -17.887 0.36 25.57 ? HO3 BO4 301 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #