data_8PCN
#
_model_server_result.job_id            R4WW2ydnSmYiCeg7TzBuZg 
_model_server_result.datetime_utc      '2024-11-13 09:45:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8pcn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    8PCN 
#
_exptl.entry_id    8PCN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              117.896 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(4~{S})-2-oxidanyl-1,3,2-dioxaborolan-4-yl]methanol' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8PCN 
_cell.length_a            41.84 
_cell.length_b            41.84 
_cell.length_c            233.28 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8PCN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    'P 32 2"' 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OG SER 45 A SER 70 1_555 B B YCH . A YCH 301 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.443 ? 
covale ? covale2 A OG SER 45 A SER 70 1_555 C B BO4 . A BO4 302 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.453 ? 
#
_chem_comp.formula           'C3 H7 B O4' 
_chem_comp.formula_weight    117.896 
_chem_comp.id                YCH 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(4~{S})-2-oxidanyl-1,3,2-dioxaborolan-4-yl]methanol' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O1 YCH sing 388 n n 
C C1 YCH sing 389 n n 
O1 B YCH sing 390 n n 
C2 C1 YCH sing 391 n n 
C2 O3 YCH sing 392 n n 
O2 B YCH sing 393 n n 
C1 O YCH sing 394 n n 
B O YCH sing 395 n n 
C1 H11 YCH sing 396 n n 
C2 H22 YCH sing 397 n n 
C2 H23 YCH sing 398 n n 
O2 H21 YCH sing 399 n n 
O3 H31 YCH sing 400 n n 
C HC3 YCH sing 401 n n 
C HC2 YCH sing 402 n n 
#
_atom_sites.entry_id                     8PCN 
_atom_sites.fract_transf_matrix[1][1]    0.023901 
_atom_sites.fract_transf_matrix[1][2]    0.013799 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.027598 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004287 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 YCH A 1 301 301 YCH GBE . 
C 3 BO4 A 1 302 302 BO4 BAB . 
D 4 SO4 A 1 303 1 SO4 SO4 . 
E 5 HOH A 1 401 175 HOH HOH . 
E 5 HOH A 2 402 328 HOH HOH . 
E 5 HOH A 3 403 10 HOH HOH . 
E 5 HOH A 4 404 69 HOH HOH . 
E 5 HOH A 5 405 348 HOH HOH . 
E 5 HOH A 6 406 181 HOH HOH . 
E 5 HOH A 7 407 361 HOH HOH . 
E 5 HOH A 8 408 337 HOH HOH . 
E 5 HOH A 9 409 214 HOH HOH . 
E 5 HOH A 10 410 92 HOH HOH . 
E 5 HOH A 11 411 118 HOH HOH . 
E 5 HOH A 12 412 2 HOH HOH . 
E 5 HOH A 13 413 153 HOH HOH . 
E 5 HOH A 14 414 53 HOH HOH . 
E 5 HOH A 15 415 255 HOH HOH . 
E 5 HOH A 16 416 110 HOH HOH . 
E 5 HOH A 17 417 251 HOH HOH . 
E 5 HOH A 18 418 50 HOH HOH . 
E 5 HOH A 19 419 80 HOH HOH . 
E 5 HOH A 20 420 35 HOH HOH . 
E 5 HOH A 21 421 6 HOH HOH . 
E 5 HOH A 22 422 18 HOH HOH . 
E 5 HOH A 23 423 220 HOH HOH . 
E 5 HOH A 24 424 309 HOH HOH . 
E 5 HOH A 25 425 65 HOH HOH . 
E 5 HOH A 26 426 45 HOH HOH . 
E 5 HOH A 27 427 8 HOH HOH . 
E 5 HOH A 28 428 179 HOH HOH . 
E 5 HOH A 29 429 16 HOH HOH . 
E 5 HOH A 30 430 44 HOH HOH . 
E 5 HOH A 31 431 71 HOH HOH . 
E 5 HOH A 32 432 38 HOH HOH . 
E 5 HOH A 33 433 55 HOH HOH . 
E 5 HOH A 34 434 82 HOH HOH . 
E 5 HOH A 35 435 241 HOH HOH . 
E 5 HOH A 36 436 46 HOH HOH . 
E 5 HOH A 37 437 57 HOH HOH . 
E 5 HOH A 38 438 357 HOH HOH . 
E 5 HOH A 39 439 176 HOH HOH . 
E 5 HOH A 40 440 30 HOH HOH . 
E 5 HOH A 41 441 261 HOH HOH . 
E 5 HOH A 42 442 12 HOH HOH . 
E 5 HOH A 43 443 22 HOH HOH . 
E 5 HOH A 44 444 21 HOH HOH . 
E 5 HOH A 45 445 48 HOH HOH . 
E 5 HOH A 46 446 60 HOH HOH . 
E 5 HOH A 47 447 173 HOH HOH . 
E 5 HOH A 48 448 198 HOH HOH . 
E 5 HOH A 49 449 9 HOH HOH . 
E 5 HOH A 50 450 63 HOH HOH . 
E 5 HOH A 51 451 32 HOH HOH . 
E 5 HOH A 52 452 148 HOH HOH . 
E 5 HOH A 53 453 164 HOH HOH . 
E 5 HOH A 54 454 7 HOH HOH . 
E 5 HOH A 55 455 252 HOH HOH . 
E 5 HOH A 56 456 1 HOH HOH . 
E 5 HOH A 57 457 25 HOH HOH . 
E 5 HOH A 58 458 28 HOH HOH . 
E 5 HOH A 59 459 76 HOH HOH . 
E 5 HOH A 60 460 5 HOH HOH . 
E 5 HOH A 61 461 4 HOH HOH . 
E 5 HOH A 62 462 207 HOH HOH . 
E 5 HOH A 63 463 94 HOH HOH . 
E 5 HOH A 64 464 3 HOH HOH . 
E 5 HOH A 65 465 27 HOH HOH . 
E 5 HOH A 66 466 174 HOH HOH . 
E 5 HOH A 67 467 67 HOH HOH . 
E 5 HOH A 68 468 95 HOH HOH . 
E 5 HOH A 69 469 186 HOH HOH . 
E 5 HOH A 70 470 51 HOH HOH . 
E 5 HOH A 71 471 87 HOH HOH . 
E 5 HOH A 72 472 70 HOH HOH . 
E 5 HOH A 73 473 56 HOH HOH . 
E 5 HOH A 74 474 183 HOH HOH . 
E 5 HOH A 75 475 93 HOH HOH . 
E 5 HOH A 76 476 11 HOH HOH . 
E 5 HOH A 77 477 29 HOH HOH . 
E 5 HOH A 78 478 13 HOH HOH . 
E 5 HOH A 79 479 58 HOH HOH . 
E 5 HOH A 80 480 178 HOH HOH . 
E 5 HOH A 81 481 15 HOH HOH . 
E 5 HOH A 82 482 26 HOH HOH . 
E 5 HOH A 83 483 33 HOH HOH . 
E 5 HOH A 84 484 36 HOH HOH . 
E 5 HOH A 85 485 182 HOH HOH . 
E 5 HOH A 86 486 147 HOH HOH . 
E 5 HOH A 87 487 216 HOH HOH . 
E 5 HOH A 88 488 336 HOH HOH . 
E 5 HOH A 89 489 41 HOH HOH . 
E 5 HOH A 90 490 338 HOH HOH . 
E 5 HOH A 91 491 303 HOH HOH . 
E 5 HOH A 92 492 24 HOH HOH . 
E 5 HOH A 93 493 276 HOH HOH . 
E 5 HOH A 94 494 72 HOH HOH . 
E 5 HOH A 95 495 310 HOH HOH . 
E 5 HOH A 96 496 84 HOH HOH . 
E 5 HOH A 97 497 206 HOH HOH . 
E 5 HOH A 98 498 34 HOH HOH . 
E 5 HOH A 99 499 289 HOH HOH . 
E 5 HOH A 100 500 177 HOH HOH . 
E 5 HOH A 101 501 191 HOH HOH . 
E 5 HOH A 102 502 47 HOH HOH . 
E 5 HOH A 103 503 99 HOH HOH . 
E 5 HOH A 104 504 274 HOH HOH . 
E 5 HOH A 105 505 280 HOH HOH . 
E 5 HOH A 106 506 42 HOH HOH . 
E 5 HOH A 107 507 258 HOH HOH . 
E 5 HOH A 108 508 14 HOH HOH . 
E 5 HOH A 109 509 31 HOH HOH . 
E 5 HOH A 110 510 17 HOH HOH . 
E 5 HOH A 111 511 154 HOH HOH . 
E 5 HOH A 112 512 54 HOH HOH . 
E 5 HOH A 113 513 151 HOH HOH . 
E 5 HOH A 114 514 165 HOH HOH . 
E 5 HOH A 115 515 185 HOH HOH . 
E 5 HOH A 116 516 347 HOH HOH . 
E 5 HOH A 117 517 226 HOH HOH . 
E 5 HOH A 118 518 37 HOH HOH . 
E 5 HOH A 119 519 61 HOH HOH . 
E 5 HOH A 120 520 327 HOH HOH . 
E 5 HOH A 121 521 85 HOH HOH . 
E 5 HOH A 122 522 122 HOH HOH . 
E 5 HOH A 123 523 247 HOH HOH . 
E 5 HOH A 124 524 83 HOH HOH . 
E 5 HOH A 125 525 203 HOH HOH . 
E 5 HOH A 126 526 39 HOH HOH . 
E 5 HOH A 127 527 117 HOH HOH . 
E 5 HOH A 128 528 156 HOH HOH . 
E 5 HOH A 129 529 283 HOH HOH . 
E 5 HOH A 130 530 242 HOH HOH . 
E 5 HOH A 131 531 264 HOH HOH . 
E 5 HOH A 132 532 155 HOH HOH . 
E 5 HOH A 133 533 259 HOH HOH . 
E 5 HOH A 134 534 81 HOH HOH . 
E 5 HOH A 135 535 23 HOH HOH . 
E 5 HOH A 136 536 201 HOH HOH . 
E 5 HOH A 137 537 262 HOH HOH . 
E 5 HOH A 138 538 64 HOH HOH . 
E 5 HOH A 139 539 187 HOH HOH . 
E 5 HOH A 140 540 20 HOH HOH . 
E 5 HOH A 141 541 253 HOH HOH . 
E 5 HOH A 142 542 40 HOH HOH . 
E 5 HOH A 143 543 149 HOH HOH . 
E 5 HOH A 144 544 19 HOH HOH . 
E 5 HOH A 145 545 196 HOH HOH . 
E 5 HOH A 146 546 113 HOH HOH . 
E 5 HOH A 147 547 194 HOH HOH . 
E 5 HOH A 148 548 233 HOH HOH . 
E 5 HOH A 149 549 123 HOH HOH . 
E 5 HOH A 150 550 260 HOH HOH . 
E 5 HOH A 151 551 227 HOH HOH . 
E 5 HOH A 152 552 133 HOH HOH . 
E 5 HOH A 153 553 74 HOH HOH . 
E 5 HOH A 154 554 234 HOH HOH . 
E 5 HOH A 155 555 287 HOH HOH . 
E 5 HOH A 156 556 330 HOH HOH . 
E 5 HOH A 157 557 184 HOH HOH . 
E 5 HOH A 158 558 265 HOH HOH . 
E 5 HOH A 159 559 350 HOH HOH . 
E 5 HOH A 160 560 114 HOH HOH . 
E 5 HOH A 161 561 190 HOH HOH . 
E 5 HOH A 162 562 341 HOH HOH . 
E 5 HOH A 163 563 279 HOH HOH . 
E 5 HOH A 164 564 335 HOH HOH . 
E 5 HOH A 165 565 317 HOH HOH . 
E 5 HOH A 166 566 109 HOH HOH . 
E 5 HOH A 167 567 105 HOH HOH . 
E 5 HOH A 168 568 200 HOH HOH . 
E 5 HOH A 169 569 197 HOH HOH . 
E 5 HOH A 170 570 211 HOH HOH . 
E 5 HOH A 171 571 204 HOH HOH . 
E 5 HOH A 172 572 218 HOH HOH . 
E 5 HOH A 173 573 275 HOH HOH . 
E 5 HOH A 174 574 246 HOH HOH . 
E 5 HOH A 175 575 221 HOH HOH . 
E 5 HOH A 176 576 205 HOH HOH . 
E 5 HOH A 177 577 326 HOH HOH . 
E 5 HOH A 178 578 193 HOH HOH . 
E 5 HOH A 179 579 160 HOH HOH . 
E 5 HOH A 180 580 239 HOH HOH . 
E 5 HOH A 181 581 73 HOH HOH . 
E 5 HOH A 182 582 49 HOH HOH . 
E 5 HOH A 183 583 236 HOH HOH . 
E 5 HOH A 184 584 334 HOH HOH . 
E 5 HOH A 185 585 286 HOH HOH . 
E 5 HOH A 186 586 254 HOH HOH . 
E 5 HOH A 187 587 301 HOH HOH . 
E 5 HOH A 188 588 322 HOH HOH . 
E 5 HOH A 189 589 215 HOH HOH . 
E 5 HOH A 190 590 78 HOH HOH . 
E 5 HOH A 191 591 291 HOH HOH . 
E 5 HOH A 192 592 127 HOH HOH . 
E 5 HOH A 193 593 66 HOH HOH . 
E 5 HOH A 194 594 104 HOH HOH . 
E 5 HOH A 195 595 195 HOH HOH . 
E 5 HOH A 196 596 152 HOH HOH . 
E 5 HOH A 197 597 304 HOH HOH . 
E 5 HOH A 198 598 188 HOH HOH . 
E 5 HOH A 199 599 212 HOH HOH . 
E 5 HOH A 200 600 189 HOH HOH . 
E 5 HOH A 201 601 299 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 YCH . A . B 2 1.315 5.178 -19.587 0.33 48.21 ? C1 YCH 301 A 1 
HETATM 2 O O1 YCH . A . B 2 0.187 3.524 -20.722 0.33 46.42 ? O1 YCH 301 A 1 
HETATM 3 C C2 YCH . A . B 2 2.734 5.849 -19.891 0.33 49.3 ? C2 YCH 301 A 1 
HETATM 4 O O2 YCH . A . B 2 1.745 2.015 -19.846 0.33 42.92 ? O2 YCH 301 A 1 
HETATM 5 O O3 YCH . A . B 2 3.506 5.835 -18.722 0.33 47.76 ? O3 YCH 301 A 1 
HETATM 6 C C YCH . A . B 2 0.651 4.848 -20.819 0.33 49.12 ? C YCH 301 A 1 
HETATM 7 O O YCH . A . B 2 1.507 4.043 -18.845 0.33 45.45 ? O YCH 301 A 1 
HETATM 8 B B YCH . A . B 2 0.844 2.948 -19.485 0.33 45.66 ? B YCH 301 A 1 
HETATM 9 H H11 YCH . A . B 2 0.692 5.871 -19.035 0.33 57.54 ? H11 YCH 301 A 1 
HETATM 10 H H22 YCH . A . B 2 2.589 6.872 -20.217 0.33 58.85 ? H22 YCH 301 A 1 
HETATM 11 H H23 YCH . A . B 2 3.241 5.291 -20.668 0.33 58.85 ? H23 YCH 301 A 1 
HETATM 12 H H21 YCH . A . B 2 1.291 1.259 -20.173 0.33 51.19 ? H21 YCH 301 A 1 
HETATM 13 H H31 YCH . A . B 2 4.42 5.863 -18.949 0.33 57.01 ? H31 YCH 301 A 1 
HETATM 14 H HC3 YCH . A . B 2 -0.188 5.517 -20.97 0.33 58.63 ? HC3 YCH 301 A 1 
HETATM 15 H HC2 YCH . A . B 2 1.35 4.93 -21.642 0.33 58.63 ? HC2 YCH 301 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           15 
#