data_8PCP # _model_server_result.job_id wzNZvrr8gn_CdPjPbNPwlg _model_server_result.datetime_utc '2024-10-20 05:43:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pcp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 8PCP # _exptl.entry_id 8PCP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.84 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BORATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8PCP _cell.length_a 41.84 _cell.length_b 41.84 _cell.length_c 233.28 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PCP _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 45 A SER 70 1_555 B B YCH . A YCH 301 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.453 ? covale ? covale2 A OG SER 45 A SER 70 1_555 C B BO4 . A BO4 302 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.428 ? # _chem_comp.formula 'B H4 O4 -1' _chem_comp.formula_weight 78.84 _chem_comp.id BO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'BORATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag B O1 BO4 sing 70 n n B O2 BO4 sing 71 n n B O3 BO4 sing 72 n n B O4 BO4 sing 73 n n O1 HO1 BO4 sing 74 n n O2 HO2 BO4 sing 75 n n O3 HO3 BO4 sing 76 n n O4 HO4 BO4 sing 77 n n # _atom_sites.entry_id 8PCP _atom_sites.fract_transf_matrix[1][1] 0.023901 _atom_sites.fract_transf_matrix[1][2] 0.013799 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027598 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004287 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 YCH A 1 301 301 YCH GBE . C 3 BO4 A 1 302 302 BO4 BAB . D 4 SO4 A 1 303 1 SO4 SO4 . E 5 HOH A 1 401 337 HOH HOH . E 5 HOH A 2 402 175 HOH HOH . E 5 HOH A 3 403 69 HOH HOH . E 5 HOH A 4 404 118 HOH HOH . E 5 HOH A 5 405 173 HOH HOH . E 5 HOH A 6 406 50 HOH HOH . E 5 HOH A 7 407 44 HOH HOH . E 5 HOH A 8 408 153 HOH HOH . E 5 HOH A 9 409 214 HOH HOH . E 5 HOH A 10 410 10 HOH HOH . E 5 HOH A 11 411 65 HOH HOH . E 5 HOH A 12 412 51 HOH HOH . E 5 HOH A 13 413 260 HOH HOH . E 5 HOH A 14 414 53 HOH HOH . E 5 HOH A 15 415 255 HOH HOH . E 5 HOH A 16 416 80 HOH HOH . E 5 HOH A 17 417 148 HOH HOH . E 5 HOH A 18 418 30 HOH HOH . E 5 HOH A 19 419 35 HOH HOH . E 5 HOH A 20 420 92 HOH HOH . E 5 HOH A 21 421 251 HOH HOH . E 5 HOH A 22 422 18 HOH HOH . E 5 HOH A 23 423 28 HOH HOH . E 5 HOH A 24 424 6 HOH HOH . E 5 HOH A 25 425 21 HOH HOH . E 5 HOH A 26 426 181 HOH HOH . E 5 HOH A 27 427 71 HOH HOH . E 5 HOH A 28 428 46 HOH HOH . E 5 HOH A 29 429 82 HOH HOH . E 5 HOH A 30 430 252 HOH HOH . E 5 HOH A 31 431 57 HOH HOH . E 5 HOH A 32 432 220 HOH HOH . E 5 HOH A 33 433 2 HOH HOH . E 5 HOH A 34 434 9 HOH HOH . E 5 HOH A 35 435 32 HOH HOH . E 5 HOH A 36 436 22 HOH HOH . E 5 HOH A 37 437 110 HOH HOH . E 5 HOH A 38 438 357 HOH HOH . E 5 HOH A 39 439 174 HOH HOH . E 5 HOH A 40 440 179 HOH HOH . E 5 HOH A 41 441 198 HOH HOH . E 5 HOH A 42 442 70 HOH HOH . E 5 HOH A 43 443 207 HOH HOH . E 5 HOH A 44 444 11 HOH HOH . E 5 HOH A 45 445 67 HOH HOH . E 5 HOH A 46 446 1 HOH HOH . E 5 HOH A 47 447 363 HOH HOH . E 5 HOH A 48 448 348 HOH HOH . E 5 HOH A 49 449 164 HOH HOH . E 5 HOH A 50 450 355 HOH HOH . E 5 HOH A 51 451 356 HOH HOH . E 5 HOH A 52 452 8 HOH HOH . E 5 HOH A 53 453 38 HOH HOH . E 5 HOH A 54 454 63 HOH HOH . E 5 HOH A 55 455 278 HOH HOH . E 5 HOH A 56 456 5 HOH HOH . E 5 HOH A 57 457 26 HOH HOH . E 5 HOH A 58 458 178 HOH HOH . E 5 HOH A 59 459 16 HOH HOH . E 5 HOH A 60 460 176 HOH HOH . E 5 HOH A 61 461 4 HOH HOH . E 5 HOH A 62 462 79 HOH HOH . E 5 HOH A 63 463 360 HOH HOH . E 5 HOH A 64 464 13 HOH HOH . E 5 HOH A 65 465 241 HOH HOH . E 5 HOH A 66 466 36 HOH HOH . E 5 HOH A 67 467 12 HOH HOH . E 5 HOH A 68 468 25 HOH HOH . E 5 HOH A 69 469 3 HOH HOH . E 5 HOH A 70 470 93 HOH HOH . E 5 HOH A 71 471 48 HOH HOH . E 5 HOH A 72 472 76 HOH HOH . E 5 HOH A 73 473 55 HOH HOH . E 5 HOH A 74 474 29 HOH HOH . E 5 HOH A 75 475 85 HOH HOH . E 5 HOH A 76 476 95 HOH HOH . E 5 HOH A 77 477 289 HOH HOH . E 5 HOH A 78 478 182 HOH HOH . E 5 HOH A 79 479 274 HOH HOH . E 5 HOH A 80 480 210 HOH HOH . E 5 HOH A 81 481 45 HOH HOH . E 5 HOH A 82 482 33 HOH HOH . E 5 HOH A 83 483 27 HOH HOH . E 5 HOH A 84 484 47 HOH HOH . E 5 HOH A 85 485 7 HOH HOH . E 5 HOH A 86 486 258 HOH HOH . E 5 HOH A 87 487 191 HOH HOH . E 5 HOH A 88 488 154 HOH HOH . E 5 HOH A 89 489 94 HOH HOH . E 5 HOH A 90 490 194 HOH HOH . E 5 HOH A 91 491 15 HOH HOH . E 5 HOH A 92 492 183 HOH HOH . E 5 HOH A 93 493 266 HOH HOH . E 5 HOH A 94 494 39 HOH HOH . E 5 HOH A 95 495 283 HOH HOH . E 5 HOH A 96 496 232 HOH HOH . E 5 HOH A 97 497 185 HOH HOH . E 5 HOH A 98 498 87 HOH HOH . E 5 HOH A 99 499 156 HOH HOH . E 5 HOH A 100 500 247 HOH HOH . E 5 HOH A 101 501 216 HOH HOH . E 5 HOH A 102 502 347 HOH HOH . E 5 HOH A 103 503 280 HOH HOH . E 5 HOH A 104 504 206 HOH HOH . E 5 HOH A 105 505 60 HOH HOH . E 5 HOH A 106 506 327 HOH HOH . E 5 HOH A 107 507 338 HOH HOH . E 5 HOH A 108 508 24 HOH HOH . E 5 HOH A 109 509 83 HOH HOH . E 5 HOH A 110 510 342 HOH HOH . E 5 HOH A 111 511 43 HOH HOH . E 5 HOH A 112 512 99 HOH HOH . E 5 HOH A 113 513 122 HOH HOH . E 5 HOH A 114 514 177 HOH HOH . E 5 HOH A 115 515 34 HOH HOH . E 5 HOH A 116 516 17 HOH HOH . E 5 HOH A 117 517 305 HOH HOH . E 5 HOH A 118 518 41 HOH HOH . E 5 HOH A 119 519 242 HOH HOH . E 5 HOH A 120 520 81 HOH HOH . E 5 HOH A 121 521 61 HOH HOH . E 5 HOH A 122 522 23 HOH HOH . E 5 HOH A 123 523 14 HOH HOH . E 5 HOH A 124 524 165 HOH HOH . E 5 HOH A 125 525 259 HOH HOH . E 5 HOH A 126 526 180 HOH HOH . E 5 HOH A 127 527 56 HOH HOH . E 5 HOH A 128 528 37 HOH HOH . E 5 HOH A 129 529 187 HOH HOH . E 5 HOH A 130 530 226 HOH HOH . E 5 HOH A 131 531 74 HOH HOH . E 5 HOH A 132 532 72 HOH HOH . E 5 HOH A 133 533 159 HOH HOH . E 5 HOH A 134 534 117 HOH HOH . E 5 HOH A 135 535 31 HOH HOH . E 5 HOH A 136 536 261 HOH HOH . E 5 HOH A 137 537 219 HOH HOH . E 5 HOH A 138 538 20 HOH HOH . E 5 HOH A 139 539 84 HOH HOH . E 5 HOH A 140 540 135 HOH HOH . E 5 HOH A 141 541 213 HOH HOH . E 5 HOH A 142 542 42 HOH HOH . E 5 HOH A 143 543 184 HOH HOH . E 5 HOH A 144 544 276 HOH HOH . E 5 HOH A 145 545 54 HOH HOH . E 5 HOH A 146 546 203 HOH HOH . E 5 HOH A 147 547 19 HOH HOH . E 5 HOH A 148 548 64 HOH HOH . E 5 HOH A 149 549 262 HOH HOH . E 5 HOH A 150 550 350 HOH HOH . E 5 HOH A 151 551 58 HOH HOH . E 5 HOH A 152 552 234 HOH HOH . E 5 HOH A 153 553 288 HOH HOH . E 5 HOH A 154 554 253 HOH HOH . E 5 HOH A 155 555 133 HOH HOH . E 5 HOH A 156 556 186 HOH HOH . E 5 HOH A 157 557 310 HOH HOH . E 5 HOH A 158 558 40 HOH HOH . E 5 HOH A 159 559 273 HOH HOH . E 5 HOH A 160 560 272 HOH HOH . E 5 HOH A 161 561 149 HOH HOH . E 5 HOH A 162 562 233 HOH HOH . E 5 HOH A 163 563 151 HOH HOH . E 5 HOH A 164 564 256 HOH HOH . E 5 HOH A 165 565 209 HOH HOH . E 5 HOH A 166 566 123 HOH HOH . E 5 HOH A 167 567 264 HOH HOH . E 5 HOH A 168 568 113 HOH HOH . E 5 HOH A 169 569 201 HOH HOH . E 5 HOH A 170 570 196 HOH HOH . E 5 HOH A 171 571 302 HOH HOH . E 5 HOH A 172 572 230 HOH HOH . E 5 HOH A 173 573 265 HOH HOH . E 5 HOH A 174 574 279 HOH HOH . E 5 HOH A 175 575 275 HOH HOH . E 5 HOH A 176 576 225 HOH HOH . E 5 HOH A 177 577 199 HOH HOH . E 5 HOH A 178 578 257 HOH HOH . E 5 HOH A 179 579 200 HOH HOH . E 5 HOH A 180 580 246 HOH HOH . E 5 HOH A 181 581 248 HOH HOH . E 5 HOH A 182 582 300 HOH HOH . E 5 HOH A 183 583 364 HOH HOH . E 5 HOH A 184 584 222 HOH HOH . E 5 HOH A 185 585 287 HOH HOH . E 5 HOH A 186 586 228 HOH HOH . E 5 HOH A 187 587 329 HOH HOH . E 5 HOH A 188 588 323 HOH HOH . E 5 HOH A 189 589 290 HOH HOH . E 5 HOH A 190 590 190 HOH HOH . E 5 HOH A 191 591 330 HOH HOH . E 5 HOH A 192 592 114 HOH HOH . E 5 HOH A 193 593 211 HOH HOH . E 5 HOH A 194 594 362 HOH HOH . E 5 HOH A 195 595 147 HOH HOH . E 5 HOH A 196 596 317 HOH HOH . E 5 HOH A 197 597 160 HOH HOH . E 5 HOH A 198 598 105 HOH HOH . E 5 HOH A 199 599 315 HOH HOH . E 5 HOH A 200 600 361 HOH HOH . E 5 HOH A 201 601 109 HOH HOH . E 5 HOH A 202 602 239 HOH HOH . E 5 HOH A 203 603 204 HOH HOH . E 5 HOH A 204 604 197 HOH HOH . E 5 HOH A 205 605 155 HOH HOH . E 5 HOH A 206 606 49 HOH HOH . E 5 HOH A 207 607 301 HOH HOH . E 5 HOH A 208 608 218 HOH HOH . E 5 HOH A 209 609 221 HOH HOH . E 5 HOH A 210 610 205 HOH HOH . E 5 HOH A 211 611 193 HOH HOH . E 5 HOH A 212 612 311 HOH HOH . E 5 HOH A 213 613 73 HOH HOH . E 5 HOH A 214 614 334 HOH HOH . E 5 HOH A 215 615 277 HOH HOH . E 5 HOH A 216 616 322 HOH HOH . E 5 HOH A 217 617 236 HOH HOH . E 5 HOH A 218 618 254 HOH HOH . E 5 HOH A 219 619 291 HOH HOH . E 5 HOH A 220 620 215 HOH HOH . E 5 HOH A 221 621 104 HOH HOH . E 5 HOH A 222 622 286 HOH HOH . E 5 HOH A 223 623 195 HOH HOH . E 5 HOH A 224 624 78 HOH HOH . E 5 HOH A 225 625 127 HOH HOH . E 5 HOH A 226 626 66 HOH HOH . E 5 HOH A 227 627 282 HOH HOH . E 5 HOH A 228 628 152 HOH HOH . E 5 HOH A 229 629 304 HOH HOH . E 5 HOH A 230 630 212 HOH HOH . E 5 HOH A 231 631 240 HOH HOH . E 5 HOH A 232 632 227 HOH HOH . E 5 HOH A 233 633 298 HOH HOH . E 5 HOH A 234 634 188 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 B B BO4 . B . C 3 0.797 2.817 -19.596 0.29 20.48 ? B BO4 302 A 1 HETATM 2 O O1 BO4 . B . C 3 1.573 1.816 -20.055 0.29 18.46 ? O1 BO4 302 A 1 HETATM 3 O O2 BO4 . B . C 3 0.13 3.398 -20.611 0.29 19.21 ? O2 BO4 302 A 1 HETATM 4 O O3 BO4 . B . C 3 1.549 3.731 -18.954 0.29 18.37 ? O3 BO4 302 A 1 HETATM 5 H HO1 BO4 . B . C 3 2.421 1.86 -19.644 0.29 22.15 ? HO1 BO4 302 A 1 HETATM 6 H HO2 BO4 . B . C 3 0.417 4.292 -20.706 0.29 23.05 ? HO2 BO4 302 A 1 HETATM 7 H HO3 BO4 . B . C 3 1.39 3.68 -18.025 0.29 22.05 ? HO3 BO4 302 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 7 #