data_8PCS
#
_model_server_result.job_id            Q7tiZO4kXIktiDyigKJVpw 
_model_server_result.datetime_utc      '2024-11-23 22:44:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8pcs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    8PCS 
#
_exptl.entry_id    8PCS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              117.896 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(4~{S})-2-oxidanyl-1,3,2-dioxaborolan-4-yl]methanol' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8PCS 
_cell.length_a            41.84 
_cell.length_b            41.84 
_cell.length_c            233.28 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8PCS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    'P 32 2"' 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OG SER 45 A SER 70 1_555 B B YCH . A YCH 301 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.464 ? 
covale ? covale2 A OG SER 45 A SER 70 1_555 C B BO4 . A BO4 302 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.433 ? 
#
_chem_comp.formula           'C3 H7 B O4' 
_chem_comp.formula_weight    117.896 
_chem_comp.id                YCH 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(4~{S})-2-oxidanyl-1,3,2-dioxaborolan-4-yl]methanol' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O1 YCH sing 388 n n 
C C1 YCH sing 389 n n 
O1 B YCH sing 390 n n 
C2 C1 YCH sing 391 n n 
C2 O3 YCH sing 392 n n 
O2 B YCH sing 393 n n 
C1 O YCH sing 394 n n 
B O YCH sing 395 n n 
C1 H11 YCH sing 396 n n 
C2 H22 YCH sing 397 n n 
C2 H23 YCH sing 398 n n 
O2 H21 YCH sing 399 n n 
O3 H31 YCH sing 400 n n 
C HC3 YCH sing 401 n n 
C HC2 YCH sing 402 n n 
#
_atom_sites.entry_id                     8PCS 
_atom_sites.fract_transf_matrix[1][1]    0.023901 
_atom_sites.fract_transf_matrix[1][2]    0.013799 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.027598 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004287 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 YCH A 1 301 301 YCH GBE . 
C 3 BO4 A 1 302 302 BO4 BAB . 
D 4 SO4 A 1 303 1 SO4 SO4 . 
E 5 HOH A 1 401 175 HOH HOH . 
E 5 HOH A 2 402 118 HOH HOH . 
E 5 HOH A 3 403 69 HOH HOH . 
E 5 HOH A 4 404 153 HOH HOH . 
E 5 HOH A 5 405 50 HOH HOH . 
E 5 HOH A 6 406 51 HOH HOH . 
E 5 HOH A 7 407 377 HOH HOH . 
E 5 HOH A 8 408 198 HOH HOH . 
E 5 HOH A 9 409 80 HOH HOH . 
E 5 HOH A 10 410 214 HOH HOH . 
E 5 HOH A 11 411 53 HOH HOH . 
E 5 HOH A 12 412 174 HOH HOH . 
E 5 HOH A 13 413 92 HOH HOH . 
E 5 HOH A 14 414 10 HOH HOH . 
E 5 HOH A 15 415 260 HOH HOH . 
E 5 HOH A 16 416 252 HOH HOH . 
E 5 HOH A 17 417 255 HOH HOH . 
E 5 HOH A 18 418 135 HOH HOH . 
E 5 HOH A 19 419 173 HOH HOH . 
E 5 HOH A 20 420 191 HOH HOH . 
E 5 HOH A 21 421 57 HOH HOH . 
E 5 HOH A 22 422 46 HOH HOH . 
E 5 HOH A 23 423 65 HOH HOH . 
E 5 HOH A 24 424 94 HOH HOH . 
E 5 HOH A 25 425 1 HOH HOH . 
E 5 HOH A 26 426 289 HOH HOH . 
E 5 HOH A 27 427 378 HOH HOH . 
E 5 HOH A 28 428 348 HOH HOH . 
E 5 HOH A 29 429 70 HOH HOH . 
E 5 HOH A 30 430 110 HOH HOH . 
E 5 HOH A 31 431 357 HOH HOH . 
E 5 HOH A 32 432 148 HOH HOH . 
E 5 HOH A 33 433 13 HOH HOH . 
E 5 HOH A 34 434 32 HOH HOH . 
E 5 HOH A 35 435 232 HOH HOH . 
E 5 HOH A 36 436 36 HOH HOH . 
E 5 HOH A 37 437 156 HOH HOH . 
E 5 HOH A 38 438 29 HOH HOH . 
E 5 HOH A 39 439 8 HOH HOH . 
E 5 HOH A 40 440 18 HOH HOH . 
E 5 HOH A 41 441 30 HOH HOH . 
E 5 HOH A 42 442 182 HOH HOH . 
E 5 HOH A 43 443 63 HOH HOH . 
E 5 HOH A 44 444 35 HOH HOH . 
E 5 HOH A 45 445 71 HOH HOH . 
E 5 HOH A 46 446 181 HOH HOH . 
E 5 HOH A 47 447 33 HOH HOH . 
E 5 HOH A 48 448 179 HOH HOH . 
E 5 HOH A 49 449 28 HOH HOH . 
E 5 HOH A 50 450 16 HOH HOH . 
E 5 HOH A 51 451 93 HOH HOH . 
E 5 HOH A 52 452 178 HOH HOH . 
E 5 HOH A 53 453 2 HOH HOH . 
E 5 HOH A 54 454 9 HOH HOH . 
E 5 HOH A 55 455 95 HOH HOH . 
E 5 HOH A 56 456 251 HOH HOH . 
E 5 HOH A 57 457 47 HOH HOH . 
E 5 HOH A 58 458 21 HOH HOH . 
E 5 HOH A 59 459 6 HOH HOH . 
E 5 HOH A 60 460 43 HOH HOH . 
E 5 HOH A 61 461 76 HOH HOH . 
E 5 HOH A 62 462 274 HOH HOH . 
E 5 HOH A 63 463 183 HOH HOH . 
E 5 HOH A 64 464 11 HOH HOH . 
E 5 HOH A 65 465 3 HOH HOH . 
E 5 HOH A 66 466 60 HOH HOH . 
E 5 HOH A 67 467 25 HOH HOH . 
E 5 HOH A 68 468 355 HOH HOH . 
E 5 HOH A 69 469 177 HOH HOH . 
E 5 HOH A 70 470 220 HOH HOH . 
E 5 HOH A 71 471 370 HOH HOH . 
E 5 HOH A 72 472 5 HOH HOH . 
E 5 HOH A 73 473 45 HOH HOH . 
E 5 HOH A 74 474 259 HOH HOH . 
E 5 HOH A 75 475 83 HOH HOH . 
E 5 HOH A 76 476 79 HOH HOH . 
E 5 HOH A 77 477 22 HOH HOH . 
E 5 HOH A 78 478 347 HOH HOH . 
E 5 HOH A 79 479 38 HOH HOH . 
E 5 HOH A 80 480 82 HOH HOH . 
E 5 HOH A 81 481 372 HOH HOH . 
E 5 HOH A 82 482 219 HOH HOH . 
E 5 HOH A 83 483 210 HOH HOH . 
E 5 HOH A 84 484 27 HOH HOH . 
E 5 HOH A 85 485 207 HOH HOH . 
E 5 HOH A 86 486 26 HOH HOH . 
E 5 HOH A 87 487 55 HOH HOH . 
E 5 HOH A 88 488 48 HOH HOH . 
E 5 HOH A 89 489 87 HOH HOH . 
E 5 HOH A 90 490 349 HOH HOH . 
E 5 HOH A 91 491 164 HOH HOH . 
E 5 HOH A 92 492 7 HOH HOH . 
E 5 HOH A 93 493 12 HOH HOH . 
E 5 HOH A 94 494 266 HOH HOH . 
E 5 HOH A 95 495 58 HOH HOH . 
E 5 HOH A 96 496 67 HOH HOH . 
E 5 HOH A 97 497 4 HOH HOH . 
E 5 HOH A 98 498 42 HOH HOH . 
E 5 HOH A 99 499 15 HOH HOH . 
E 5 HOH A 100 500 194 HOH HOH . 
E 5 HOH A 101 501 280 HOH HOH . 
E 5 HOH A 102 502 34 HOH HOH . 
E 5 HOH A 103 503 84 HOH HOH . 
E 5 HOH A 104 504 364 HOH HOH . 
E 5 HOH A 105 505 85 HOH HOH . 
E 5 HOH A 106 506 154 HOH HOH . 
E 5 HOH A 107 507 206 HOH HOH . 
E 5 HOH A 108 508 41 HOH HOH . 
E 5 HOH A 109 509 185 HOH HOH . 
E 5 HOH A 110 510 39 HOH HOH . 
E 5 HOH A 111 511 226 HOH HOH . 
E 5 HOH A 112 512 213 HOH HOH . 
E 5 HOH A 113 513 165 HOH HOH . 
E 5 HOH A 114 514 81 HOH HOH . 
E 5 HOH A 115 515 209 HOH HOH . 
E 5 HOH A 116 516 273 HOH HOH . 
E 5 HOH A 117 517 31 HOH HOH . 
E 5 HOH A 118 518 72 HOH HOH . 
E 5 HOH A 119 519 242 HOH HOH . 
E 5 HOH A 120 520 338 HOH HOH . 
E 5 HOH A 121 521 327 HOH HOH . 
E 5 HOH A 122 522 17 HOH HOH . 
E 5 HOH A 123 523 261 HOH HOH . 
E 5 HOH A 124 524 247 HOH HOH . 
E 5 HOH A 125 525 44 HOH HOH . 
E 5 HOH A 126 526 310 HOH HOH . 
E 5 HOH A 127 527 276 HOH HOH . 
E 5 HOH A 128 528 99 HOH HOH . 
E 5 HOH A 129 529 147 HOH HOH . 
E 5 HOH A 130 530 283 HOH HOH . 
E 5 HOH A 131 531 74 HOH HOH . 
E 5 HOH A 132 532 257 HOH HOH . 
E 5 HOH A 133 533 24 HOH HOH . 
E 5 HOH A 134 534 61 HOH HOH . 
E 5 HOH A 135 535 23 HOH HOH . 
E 5 HOH A 136 536 360 HOH HOH . 
E 5 HOH A 137 537 216 HOH HOH . 
E 5 HOH A 138 538 184 HOH HOH . 
E 5 HOH A 139 539 187 HOH HOH . 
E 5 HOH A 140 540 40 HOH HOH . 
E 5 HOH A 141 541 14 HOH HOH . 
E 5 HOH A 142 542 272 HOH HOH . 
E 5 HOH A 143 543 54 HOH HOH . 
E 5 HOH A 144 544 203 HOH HOH . 
E 5 HOH A 145 545 350 HOH HOH . 
E 5 HOH A 146 546 20 HOH HOH . 
E 5 HOH A 147 547 56 HOH HOH . 
E 5 HOH A 148 548 278 HOH HOH . 
E 5 HOH A 149 549 234 HOH HOH . 
E 5 HOH A 150 550 201 HOH HOH . 
E 5 HOH A 151 551 159 HOH HOH . 
E 5 HOH A 152 552 19 HOH HOH . 
E 5 HOH A 153 553 302 HOH HOH . 
E 5 HOH A 154 554 117 HOH HOH . 
E 5 HOH A 155 555 133 HOH HOH . 
E 5 HOH A 156 556 64 HOH HOH . 
E 5 HOH A 157 557 290 HOH HOH . 
E 5 HOH A 158 558 376 HOH HOH . 
E 5 HOH A 159 559 123 HOH HOH . 
E 5 HOH A 160 560 122 HOH HOH . 
E 5 HOH A 161 561 196 HOH HOH . 
E 5 HOH A 162 562 248 HOH HOH . 
E 5 HOH A 163 563 362 HOH HOH . 
E 5 HOH A 164 564 253 HOH HOH . 
E 5 HOH A 165 565 230 HOH HOH . 
E 5 HOH A 166 566 246 HOH HOH . 
E 5 HOH A 167 567 262 HOH HOH . 
E 5 HOH A 168 568 288 HOH HOH . 
E 5 HOH A 169 569 275 HOH HOH . 
E 5 HOH A 170 570 264 HOH HOH . 
E 5 HOH A 171 571 151 HOH HOH . 
E 5 HOH A 172 572 113 HOH HOH . 
E 5 HOH A 173 573 149 HOH HOH . 
E 5 HOH A 174 574 279 HOH HOH . 
E 5 HOH A 175 575 330 HOH HOH . 
E 5 HOH A 176 576 369 HOH HOH . 
E 5 HOH A 177 577 265 HOH HOH . 
E 5 HOH A 178 578 199 HOH HOH . 
E 5 HOH A 179 579 300 HOH HOH . 
E 5 HOH A 180 580 200 HOH HOH . 
E 5 HOH A 181 581 305 HOH HOH . 
E 5 HOH A 182 582 211 HOH HOH . 
E 5 HOH A 183 583 317 HOH HOH . 
E 5 HOH A 184 584 356 HOH HOH . 
E 5 HOH A 185 585 373 HOH HOH . 
E 5 HOH A 186 586 287 HOH HOH . 
E 5 HOH A 187 587 114 HOH HOH . 
E 5 HOH A 188 588 190 HOH HOH . 
E 5 HOH A 189 589 256 HOH HOH . 
E 5 HOH A 190 590 225 HOH HOH . 
E 5 HOH A 191 591 323 HOH HOH . 
E 5 HOH A 192 592 155 HOH HOH . 
E 5 HOH A 193 593 109 HOH HOH . 
E 5 HOH A 194 594 105 HOH HOH . 
E 5 HOH A 195 595 204 HOH HOH . 
E 5 HOH A 196 596 361 HOH HOH . 
E 5 HOH A 197 597 160 HOH HOH . 
E 5 HOH A 198 598 221 HOH HOH . 
E 5 HOH A 199 599 49 HOH HOH . 
E 5 HOH A 200 600 205 HOH HOH . 
E 5 HOH A 201 601 311 HOH HOH . 
E 5 HOH A 202 602 197 HOH HOH . 
E 5 HOH A 203 603 239 HOH HOH . 
E 5 HOH A 204 604 193 HOH HOH . 
E 5 HOH A 205 605 301 HOH HOH . 
E 5 HOH A 206 606 368 HOH HOH . 
E 5 HOH A 207 607 334 HOH HOH . 
E 5 HOH A 208 608 215 HOH HOH . 
E 5 HOH A 209 609 218 HOH HOH . 
E 5 HOH A 210 610 277 HOH HOH . 
E 5 HOH A 211 611 322 HOH HOH . 
E 5 HOH A 212 612 73 HOH HOH . 
E 5 HOH A 213 613 371 HOH HOH . 
E 5 HOH A 214 614 374 HOH HOH . 
E 5 HOH A 215 615 291 HOH HOH . 
E 5 HOH A 216 616 286 HOH HOH . 
E 5 HOH A 217 617 282 HOH HOH . 
E 5 HOH A 218 618 78 HOH HOH . 
E 5 HOH A 219 619 104 HOH HOH . 
E 5 HOH A 220 620 304 HOH HOH . 
E 5 HOH A 221 621 212 HOH HOH . 
E 5 HOH A 222 622 227 HOH HOH . 
E 5 HOH A 223 623 127 HOH HOH . 
E 5 HOH A 224 624 66 HOH HOH . 
E 5 HOH A 225 625 363 HOH HOH . 
E 5 HOH A 226 626 152 HOH HOH . 
E 5 HOH A 227 627 254 HOH HOH . 
E 5 HOH A 228 628 240 HOH HOH . 
E 5 HOH A 229 629 188 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 YCH . A . B 2 1.325 5.161 -19.609 0.71 24.77 ? C1 YCH 301 A 1 
HETATM 2 O O1 YCH . A . B 2 0.072 3.573 -20.713 0.71 20.73 ? O1 YCH 301 A 1 
HETATM 3 C C2 YCH . A . B 2 2.704 5.896 -19.95 0.71 28.28 ? C2 YCH 301 A 1 
HETATM 4 O O2 YCH . A . B 2 1.628 1.93 -19.96 0.71 18.38 ? O2 YCH 301 A 1 
HETATM 5 O O3 YCH . A . B 2 3.387 6.2 -18.765 0.71 28.01 ? O3 YCH 301 A 1 
HETATM 6 C C YCH . A . B 2 0.623 4.864 -20.825 0.71 23.77 ? C YCH 301 A 1 
HETATM 7 O O YCH . A . B 2 1.553 3.99 -18.934 0.71 20.17 ? O YCH 301 A 1 
HETATM 8 B B YCH . A . B 2 0.806 2.929 -19.55 0.71 20.2 ? B YCH 301 A 1 
HETATM 9 H H11 YCH . A . B 2 0.728 5.816 -18.986 0.71 29.72 ? H11 YCH 301 A 1 
HETATM 10 H H22 YCH . A . B 2 2.498 6.812 -20.491 0.71 33.94 ? H22 YCH 301 A 1 
HETATM 11 H H23 YCH . A . B 2 3.316 5.245 -20.561 0.71 33.94 ? H23 YCH 301 A 1 
HETATM 12 H H21 YCH . A . B 2 1.125 1.185 -20.238 0.71 22.05 ? H21 YCH 301 A 1 
HETATM 13 H H31 YCH . A . B 2 4.248 5.816 -18.782 0.71 33.61 ? H31 YCH 301 A 1 
HETATM 14 H HC3 YCH . A . B 2 -0.171 5.586 -20.971 0.71 28.52 ? HC3 YCH 301 A 1 
HETATM 15 H HC2 YCH . A . B 2 1.315 4.891 -21.658 0.71 28.52 ? HC2 YCH 301 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           15 
#