data_8PDA # _model_server_result.job_id 4MqCEOO0U-1OfbqkT2rA8Q _model_server_result.datetime_utc '2024-11-05 19:48:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pda # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1702}' # _entry.id 8PDA # _exptl.entry_id 8PDA _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 787.121 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8PDA _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PDA _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # _chem_comp.formula 'C44 H85 N O8 P 1' _chem_comp.formula_weight 787.121 _chem_comp.id PCW _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (Z,Z)-4-HYDROXY-N,N,N-TRIMETHYL-10-OXO-7-[(1-OXO-9-OCTADECENYL)OXY]-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-18-EN-1-AMINIUM-4-OXIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PCW sing 235 n n C1 O3P PCW sing 236 n n C1 H11 PCW sing 237 n n C1 H12 PCW sing 238 n n C2 C3 PCW sing 239 n n C2 O2 PCW sing 240 n n C2 H2 PCW sing 241 n n C3 O3 PCW sing 242 n n C3 H31 PCW sing 243 n n C3 H32 PCW sing 244 n n C4 C5 PCW sing 245 n n C4 O4P PCW sing 246 n n C4 H41 PCW sing 247 n n C4 H42 PCW sing 248 n n C5 N PCW sing 249 n n C5 H51 PCW sing 250 n n C5 H52 PCW sing 251 n n C6 N PCW sing 252 n n C6 H61 PCW sing 253 n n C6 H62 PCW sing 254 n n C6 H63 PCW sing 255 n n C7 N PCW sing 256 n n C7 H71 PCW sing 257 n n C7 H72 PCW sing 258 n n C7 H73 PCW sing 259 n n C8 N PCW sing 260 n n C8 H81 PCW sing 261 n n C8 H82 PCW sing 262 n n C8 H83 PCW sing 263 n n C11 C12 PCW sing 264 n n C11 O3 PCW sing 265 n n C11 O11 PCW doub 266 n n C12 C13 PCW sing 267 n n C12 H121 PCW sing 268 n n C12 H122 PCW sing 269 n n C13 C14 PCW sing 270 n n C13 H131 PCW sing 271 n n C13 H132 PCW sing 272 n n C14 C15 PCW sing 273 n n C14 H141 PCW sing 274 n n C14 H142 PCW sing 275 n n C15 C16 PCW sing 276 n n C15 H151 PCW sing 277 n n C15 H152 PCW sing 278 n n C16 C17 PCW sing 279 n n C16 H161 PCW sing 280 n n C16 H162 PCW sing 281 n n C17 C18 PCW sing 282 n n C17 H171 PCW sing 283 n n C17 H172 PCW sing 284 n n C18 C19 PCW sing 285 n n C18 H181 PCW sing 286 n n C18 H182 PCW sing 287 n n C19 C20 PCW doub 288 z n C19 H19 PCW sing 289 n n C20 C21 PCW sing 290 n n C20 H20 PCW sing 291 n n C21 C22 PCW sing 292 n n C21 H211 PCW sing 293 n n C21 H212 PCW sing 294 n n C22 C23 PCW sing 295 n n C22 H221 PCW sing 296 n n C22 H222 PCW sing 297 n n C23 C24 PCW sing 298 n n C23 H231 PCW sing 299 n n C23 H232 PCW sing 300 n n C24 C25 PCW sing 301 n n C24 H241 PCW sing 302 n n C24 H242 PCW sing 303 n n C25 C26 PCW sing 304 n n C25 H251 PCW sing 305 n n C25 H252 PCW sing 306 n n C26 C27 PCW sing 307 n n C26 H261 PCW sing 308 n n C26 H262 PCW sing 309 n n C27 C28 PCW sing 310 n n C27 H271 PCW sing 311 n n C27 H272 PCW sing 312 n n C28 H281 PCW sing 313 n n C28 H282 PCW sing 314 n n C28 H283 PCW sing 315 n n C31 C32 PCW sing 316 n n C31 O2 PCW sing 317 n n C31 O31 PCW doub 318 n n C32 C33 PCW sing 319 n n C32 H321 PCW sing 320 n n C32 H322 PCW sing 321 n n C33 C34 PCW sing 322 n n C33 H331 PCW sing 323 n n C33 H332 PCW sing 324 n n C34 C35 PCW sing 325 n n C34 H341 PCW sing 326 n n C34 H342 PCW sing 327 n n C35 C36 PCW sing 328 n n C35 H351 PCW sing 329 n n C35 H352 PCW sing 330 n n C36 C37 PCW sing 331 n n C36 H361 PCW sing 332 n n C36 H362 PCW sing 333 n n C37 C38 PCW sing 334 n n C37 H371 PCW sing 335 n n C37 H372 PCW sing 336 n n C38 C39 PCW sing 337 n n C38 H381 PCW sing 338 n n C38 H382 PCW sing 339 n n C39 C40 PCW doub 340 z n C39 H39 PCW sing 341 n n C40 C41 PCW sing 342 n n C40 H40 PCW sing 343 n n C41 C42 PCW sing 344 n n C41 H411 PCW sing 345 n n C41 H412 PCW sing 346 n n C42 C43 PCW sing 347 n n C42 H421 PCW sing 348 n n C42 H422 PCW sing 349 n n C43 C44 PCW sing 350 n n C43 H431 PCW sing 351 n n C43 H432 PCW sing 352 n n C44 C45 PCW sing 353 n n C44 H441 PCW sing 354 n n C44 H442 PCW sing 355 n n C45 C46 PCW sing 356 n n C45 H451 PCW sing 357 n n C45 H452 PCW sing 358 n n C46 C47 PCW sing 359 n n C46 H461 PCW sing 360 n n C46 H462 PCW sing 361 n n C47 C48 PCW sing 362 n n C47 H471 PCW sing 363 n n C47 H472 PCW sing 364 n n C48 H481 PCW sing 365 n n C48 H482 PCW sing 366 n n C48 H483 PCW sing 367 n n O1P P PCW sing 368 n n O1P H1P PCW sing 369 n n O2P P PCW doub 370 n n O3P P PCW sing 371 n n O4P P PCW sing 372 n n # _atom_sites.entry_id 8PDA _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PCW A 1 1701 1701 PCW PCW . C 2 PCW A 1 1702 1801 PCW PCW . D 2 PCW A 1 1703 1901 PCW PCW . E 3 PX6 A 1 1704 2101 PX6 PX6 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PCW . . . C 2 121.573 151.877 123.317 1 15.77 ? C1 PCW 1702 A 1 HETATM 2 C C2 PCW . . . C 2 122.963 152.057 122.749 1 15.77 ? C2 PCW 1702 A 1 HETATM 3 C C3 PCW . . . C 2 123.989 152.511 123.761 1 15.77 ? C3 PCW 1702 A 1 HETATM 4 C C4 PCW . . . C 2 118.408 149.178 124.801 1 15.77 ? C4 PCW 1702 A 1 HETATM 5 C C5 PCW . . . C 2 118.058 148.059 123.85 1 15.77 ? C5 PCW 1702 A 1 HETATM 6 C C6 PCW . . . C 2 118.209 145.686 123.238 1 15.77 ? C6 PCW 1702 A 1 HETATM 7 C C7 PCW . . . C 2 120.227 147.007 123.314 1 15.77 ? C7 PCW 1702 A 1 HETATM 8 C C8 PCW . . . C 2 119.09 146.419 125.371 1 15.77 ? C8 PCW 1702 A 1 HETATM 9 C C11 PCW . . . C 2 126.332 152.745 123.829 1 15.77 ? C11 PCW 1702 A 1 HETATM 10 C C12 PCW . . . C 2 127.507 153.279 123.06 1 15.77 ? C12 PCW 1702 A 1 HETATM 11 C C13 PCW . . . C 2 127.985 152.388 121.955 1 15.77 ? C13 PCW 1702 A 1 HETATM 12 C C14 PCW . . . C 2 129.083 153.047 121.134 1 15.77 ? C14 PCW 1702 A 1 HETATM 13 C C15 PCW . . . C 2 129.752 152.153 120.119 1 15.77 ? C15 PCW 1702 A 1 HETATM 14 C C16 PCW . . . C 2 130.772 152.863 119.259 1 15.77 ? C16 PCW 1702 A 1 HETATM 15 C C17 PCW . . . C 2 131.584 151.949 118.35 1 15.77 ? C17 PCW 1702 A 1 HETATM 16 C C18 PCW . . . C 2 132.563 152.665 117.468 1 15.77 ? C18 PCW 1702 A 1 HETATM 17 C C19 PCW . . . C 2 133.505 151.739 116.762 1 15.77 ? C19 PCW 1702 A 1 HETATM 18 C C20 PCW . . . C 2 134.449 152.075 115.92 1 15.77 ? C20 PCW 1702 A 1 HETATM 19 C C21 PCW . . . C 2 135.487 151.136 115.385 1 15.77 ? C21 PCW 1702 A 1 HETATM 20 C C22 PCW . . . C 2 136.431 151.766 114.406 1 15.77 ? C22 PCW 1702 A 1 HETATM 21 C C23 PCW . . . C 2 135.804 152.127 113.071 1 15.77 ? C23 PCW 1702 A 1 HETATM 22 C C24 PCW . . . C 2 136.756 152.761 112.086 1 15.77 ? C24 PCW 1702 A 1 HETATM 23 C C25 PCW . . . C 2 136.147 153.045 110.734 1 15.77 ? C25 PCW 1702 A 1 HETATM 24 C C26 PCW . . . C 2 137.068 153.749 109.768 1 15.77 ? C26 PCW 1702 A 1 HETATM 25 C C27 PCW . . . C 2 137.506 155.122 110.209 1 15.77 ? C27 PCW 1702 A 1 HETATM 26 C C28 PCW . . . C 2 138.419 155.818 109.228 1 15.77 ? C28 PCW 1702 A 1 HETATM 27 C C31 PCW . . . C 2 123.171 150.591 120.857 1 15.77 ? C31 PCW 1702 A 1 HETATM 28 C C32 PCW . . . C 2 124.352 149.998 120.147 1 15.77 ? C32 PCW 1702 A 1 HETATM 29 C C33 PCW . . . C 2 124.158 149.842 118.675 1 15.77 ? C33 PCW 1702 A 1 HETATM 30 C C34 PCW . . . C 2 125.466 149.963 117.914 1 15.77 ? C34 PCW 1702 A 1 HETATM 31 C C35 PCW . . . C 2 126.023 151.365 117.885 1 15.77 ? C35 PCW 1702 A 1 HETATM 32 C C36 PCW . . . C 2 127.426 151.473 117.343 1 15.77 ? C36 PCW 1702 A 1 HETATM 33 C C37 PCW . . . C 2 127.616 150.908 115.942 1 15.77 ? C37 PCW 1702 A 1 HETATM 34 C C38 PCW . . . C 2 129.022 151.015 115.439 1 15.77 ? C38 PCW 1702 A 1 HETATM 35 C C39 PCW . . . C 2 129.245 150.349 114.117 1 15.77 ? C39 PCW 1702 A 1 HETATM 36 C C40 PCW . . . C 2 130.4 150.285 113.507 1 15.77 ? C40 PCW 1702 A 1 HETATM 37 C C41 PCW . . . C 2 130.687 149.587 112.215 1 15.77 ? C41 PCW 1702 A 1 HETATM 38 C C42 PCW . . . C 2 132.119 149.7 111.791 1 15.77 ? C42 PCW 1702 A 1 HETATM 39 C C43 PCW . . . C 2 132.447 148.981 110.494 1 15.77 ? C43 PCW 1702 A 1 HETATM 40 N N PCW . . . C 2 118.897 146.798 123.945 1 15.77 ? N PCW 1702 A 1 HETATM 41 O O2 PCW . . . C 2 123.474 150.84 122.139 1 15.77 ? O2 PCW 1702 A 1 HETATM 42 O O3 PCW . . . C 2 125.246 152.669 123.069 1 15.77 ? O3 PCW 1702 A 1 HETATM 43 O O11 PCW . . . C 2 126.35 152.415 124.986 1 15.77 ? O11 PCW 1702 A 1 HETATM 44 O O31 PCW . . . C 2 122.094 150.816 120.372 1 15.77 ? O31 PCW 1702 A 1 HETATM 45 O O1P PCW . . . C 2 119.405 152.084 125.419 1 15.77 ? O1P PCW 1702 A 1 HETATM 46 O O2P PCW . . . C 2 120.71 150.248 126.723 1 15.77 ? O2P PCW 1702 A 1 HETATM 47 O O3P PCW . . . C 2 121.668 151.296 124.646 1 15.77 ? O3P PCW 1702 A 1 HETATM 48 O O4P PCW . . . C 2 119.698 149.759 124.469 1 15.77 ? O4P PCW 1702 A 1 HETATM 49 P P PCW . . . C 2 120.321 150.892 125.421 1 15.77 ? P PCW 1702 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 49 #