data_8PDA
#
_model_server_result.job_id            VtpHXRl02iB6QI6W2qvqYw 
_model_server_result.datetime_utc      '2024-11-05 19:45:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8pda 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1703}' 
#
_entry.id    8PDA 
#
_exptl.entry_id    8PDA 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              787.121 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8PDA 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8PDA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C44 H85 N O8 P 1' 
_chem_comp.formula_weight    787.121 
_chem_comp.id                PCW 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     (Z,Z)-4-HYDROXY-N,N,N-TRIMETHYL-10-OXO-7-[(1-OXO-9-OCTADECENYL)OXY]-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-18-EN-1-AMINIUM-4-OXIDE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 PCW sing 235 n n 
C1 O3P PCW sing 236 n n 
C1 H11 PCW sing 237 n n 
C1 H12 PCW sing 238 n n 
C2 C3 PCW sing 239 n n 
C2 O2 PCW sing 240 n n 
C2 H2 PCW sing 241 n n 
C3 O3 PCW sing 242 n n 
C3 H31 PCW sing 243 n n 
C3 H32 PCW sing 244 n n 
C4 C5 PCW sing 245 n n 
C4 O4P PCW sing 246 n n 
C4 H41 PCW sing 247 n n 
C4 H42 PCW sing 248 n n 
C5 N PCW sing 249 n n 
C5 H51 PCW sing 250 n n 
C5 H52 PCW sing 251 n n 
C6 N PCW sing 252 n n 
C6 H61 PCW sing 253 n n 
C6 H62 PCW sing 254 n n 
C6 H63 PCW sing 255 n n 
C7 N PCW sing 256 n n 
C7 H71 PCW sing 257 n n 
C7 H72 PCW sing 258 n n 
C7 H73 PCW sing 259 n n 
C8 N PCW sing 260 n n 
C8 H81 PCW sing 261 n n 
C8 H82 PCW sing 262 n n 
C8 H83 PCW sing 263 n n 
C11 C12 PCW sing 264 n n 
C11 O3 PCW sing 265 n n 
C11 O11 PCW doub 266 n n 
C12 C13 PCW sing 267 n n 
C12 H121 PCW sing 268 n n 
C12 H122 PCW sing 269 n n 
C13 C14 PCW sing 270 n n 
C13 H131 PCW sing 271 n n 
C13 H132 PCW sing 272 n n 
C14 C15 PCW sing 273 n n 
C14 H141 PCW sing 274 n n 
C14 H142 PCW sing 275 n n 
C15 C16 PCW sing 276 n n 
C15 H151 PCW sing 277 n n 
C15 H152 PCW sing 278 n n 
C16 C17 PCW sing 279 n n 
C16 H161 PCW sing 280 n n 
C16 H162 PCW sing 281 n n 
C17 C18 PCW sing 282 n n 
C17 H171 PCW sing 283 n n 
C17 H172 PCW sing 284 n n 
C18 C19 PCW sing 285 n n 
C18 H181 PCW sing 286 n n 
C18 H182 PCW sing 287 n n 
C19 C20 PCW doub 288 z n 
C19 H19 PCW sing 289 n n 
C20 C21 PCW sing 290 n n 
C20 H20 PCW sing 291 n n 
C21 C22 PCW sing 292 n n 
C21 H211 PCW sing 293 n n 
C21 H212 PCW sing 294 n n 
C22 C23 PCW sing 295 n n 
C22 H221 PCW sing 296 n n 
C22 H222 PCW sing 297 n n 
C23 C24 PCW sing 298 n n 
C23 H231 PCW sing 299 n n 
C23 H232 PCW sing 300 n n 
C24 C25 PCW sing 301 n n 
C24 H241 PCW sing 302 n n 
C24 H242 PCW sing 303 n n 
C25 C26 PCW sing 304 n n 
C25 H251 PCW sing 305 n n 
C25 H252 PCW sing 306 n n 
C26 C27 PCW sing 307 n n 
C26 H261 PCW sing 308 n n 
C26 H262 PCW sing 309 n n 
C27 C28 PCW sing 310 n n 
C27 H271 PCW sing 311 n n 
C27 H272 PCW sing 312 n n 
C28 H281 PCW sing 313 n n 
C28 H282 PCW sing 314 n n 
C28 H283 PCW sing 315 n n 
C31 C32 PCW sing 316 n n 
C31 O2 PCW sing 317 n n 
C31 O31 PCW doub 318 n n 
C32 C33 PCW sing 319 n n 
C32 H321 PCW sing 320 n n 
C32 H322 PCW sing 321 n n 
C33 C34 PCW sing 322 n n 
C33 H331 PCW sing 323 n n 
C33 H332 PCW sing 324 n n 
C34 C35 PCW sing 325 n n 
C34 H341 PCW sing 326 n n 
C34 H342 PCW sing 327 n n 
C35 C36 PCW sing 328 n n 
C35 H351 PCW sing 329 n n 
C35 H352 PCW sing 330 n n 
C36 C37 PCW sing 331 n n 
C36 H361 PCW sing 332 n n 
C36 H362 PCW sing 333 n n 
C37 C38 PCW sing 334 n n 
C37 H371 PCW sing 335 n n 
C37 H372 PCW sing 336 n n 
C38 C39 PCW sing 337 n n 
C38 H381 PCW sing 338 n n 
C38 H382 PCW sing 339 n n 
C39 C40 PCW doub 340 z n 
C39 H39 PCW sing 341 n n 
C40 C41 PCW sing 342 n n 
C40 H40 PCW sing 343 n n 
C41 C42 PCW sing 344 n n 
C41 H411 PCW sing 345 n n 
C41 H412 PCW sing 346 n n 
C42 C43 PCW sing 347 n n 
C42 H421 PCW sing 348 n n 
C42 H422 PCW sing 349 n n 
C43 C44 PCW sing 350 n n 
C43 H431 PCW sing 351 n n 
C43 H432 PCW sing 352 n n 
C44 C45 PCW sing 353 n n 
C44 H441 PCW sing 354 n n 
C44 H442 PCW sing 355 n n 
C45 C46 PCW sing 356 n n 
C45 H451 PCW sing 357 n n 
C45 H452 PCW sing 358 n n 
C46 C47 PCW sing 359 n n 
C46 H461 PCW sing 360 n n 
C46 H462 PCW sing 361 n n 
C47 C48 PCW sing 362 n n 
C47 H471 PCW sing 363 n n 
C47 H472 PCW sing 364 n n 
C48 H481 PCW sing 365 n n 
C48 H482 PCW sing 366 n n 
C48 H483 PCW sing 367 n n 
O1P P PCW sing 368 n n 
O1P H1P PCW sing 369 n n 
O2P P PCW doub 370 n n 
O3P P PCW sing 371 n n 
O4P P PCW sing 372 n n 
#
_atom_sites.entry_id                     8PDA 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PCW A 1 1701 1701 PCW PCW . 
C 2 PCW A 1 1702 1801 PCW PCW . 
D 2 PCW A 1 1703 1901 PCW PCW . 
E 3 PX6 A 1 1704 2101 PX6 PX6 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PCW . . . D 2 143.939 109.534 108.118 1 14.05 ? C1 PCW 1703 A 1 
HETATM 2 C C2 PCW . . . D 2 142.626 109.322 107.399 1 14.05 ? C2 PCW 1703 A 1 
HETATM 3 C C3 PCW . . . D 2 141.774 108.231 108.007 1 14.05 ? C3 PCW 1703 A 1 
HETATM 4 C C11 PCW . . . D 2 140.428 107.853 109.893 1 14.05 ? C11 PCW 1703 A 1 
HETATM 5 C C12 PCW . . . D 2 139.924 108.425 111.186 1 14.05 ? C12 PCW 1703 A 1 
HETATM 6 C C13 PCW . . . D 2 138.509 108.901 111.101 1 14.05 ? C13 PCW 1703 A 1 
HETATM 7 C C14 PCW . . . D 2 137.89 109.154 112.463 1 14.05 ? C14 PCW 1703 A 1 
HETATM 8 C C15 PCW . . . D 2 136.562 109.865 112.406 1 14.05 ? C15 PCW 1703 A 1 
HETATM 9 C C16 PCW . . . D 2 135.787 109.857 113.699 1 14.05 ? C16 PCW 1703 A 1 
HETATM 10 C C17 PCW . . . D 2 134.567 110.769 113.694 1 14.05 ? C17 PCW 1703 A 1 
HETATM 11 C C18 PCW . . . D 2 133.598 110.543 114.816 1 14.05 ? C18 PCW 1703 A 1 
HETATM 12 C C19 PCW . . . D 2 132.73 109.338 114.618 1 14.05 ? C19 PCW 1703 A 1 
HETATM 13 C C20 PCW . . . D 2 133.098 108.084 114.646 1 14.05 ? C20 PCW 1703 A 1 
HETATM 14 C C21 PCW . . . D 2 132.272 106.933 114.166 1 14.05 ? C21 PCW 1703 A 1 
HETATM 15 C C22 PCW . . . D 2 131.991 107.007 112.7 1 14.05 ? C22 PCW 1703 A 1 
HETATM 16 C C23 PCW . . . D 2 131.143 105.872 112.158 1 14.05 ? C23 PCW 1703 A 1 
HETATM 17 C C24 PCW . . . D 2 130.904 105.951 110.672 1 14.05 ? C24 PCW 1703 A 1 
HETATM 18 C C25 PCW . . . D 2 130.294 107.254 110.218 1 14.05 ? C25 PCW 1703 A 1 
HETATM 19 C C26 PCW . . . D 2 130.08 107.353 108.729 1 14.05 ? C26 PCW 1703 A 1 
HETATM 20 C C31 PCW . . . D 2 140.835 110.686 106.555 1 14.05 ? C31 PCW 1703 A 1 
HETATM 21 C C32 PCW . . . D 2 140.051 111.949 106.784 1 14.05 ? C32 PCW 1703 A 1 
HETATM 22 C C33 PCW . . . D 2 138.926 112.146 105.814 1 14.05 ? C33 PCW 1703 A 1 
HETATM 23 C C34 PCW . . . D 2 137.782 111.169 106.024 1 14.05 ? C34 PCW 1703 A 1 
HETATM 24 C C35 PCW . . . D 2 137.166 111.235 107.396 1 14.05 ? C35 PCW 1703 A 1 
HETATM 25 C C36 PCW . . . D 2 135.95 110.363 107.574 1 14.05 ? C36 PCW 1703 A 1 
HETATM 26 C C37 PCW . . . D 2 135.465 110.283 109.015 1 14.05 ? C37 PCW 1703 A 1 
HETATM 27 C C38 PCW . . . D 2 135.077 111.6 109.607 1 14.05 ? C38 PCW 1703 A 1 
HETATM 28 C C39 PCW . . . D 2 133.65 111.972 109.355 1 14.05 ? C39 PCW 1703 A 1 
HETATM 29 C C40 PCW . . . D 2 132.624 111.309 109.818 1 14.05 ? C40 PCW 1703 A 1 
HETATM 30 C C41 PCW . . . D 2 131.197 111.761 109.791 1 14.05 ? C41 PCW 1703 A 1 
HETATM 31 C C42 PCW . . . D 2 130.626 111.943 111.163 1 14.05 ? C42 PCW 1703 A 1 
HETATM 32 C C43 PCW . . . D 2 129.202 112.468 111.188 1 14.05 ? C43 PCW 1703 A 1 
HETATM 33 C C44 PCW . . . D 2 128.645 112.669 112.575 1 14.05 ? C44 PCW 1703 A 1 
HETATM 34 C C45 PCW . . . D 2 127.238 113.21 112.608 1 14.05 ? C45 PCW 1703 A 1 
HETATM 35 C C46 PCW . . . D 2 126.679 113.392 113.997 1 14.05 ? C46 PCW 1703 A 1 
HETATM 36 C C47 PCW . . . D 2 125.286 113.962 114.04 1 14.05 ? C47 PCW 1703 A 1 
HETATM 37 C C48 PCW . . . D 2 124.261 113.117 113.325 1 14.05 ? C48 PCW 1703 A 1 
HETATM 38 O O2 PCW . . . D 2 141.877 110.57 107.395 1 14.05 ? O2 PCW 1703 A 1 
HETATM 39 O O3 PCW . . . D 2 141.317 108.651 109.311 1 14.05 ? O3 PCW 1703 A 1 
HETATM 40 O O11 PCW . . . D 2 140.081 106.802 109.424 1 14.05 ? O11 PCW 1703 A 1 
HETATM 41 O O31 PCW . . . D 2 140.588 109.872 105.705 1 14.05 ? O31 PCW 1703 A 1 
HETATM 42 O O1P PCW . . . D 2 147.008 109.361 107.676 1 14.05 ? O1P PCW 1703 A 1 
HETATM 43 O O2P PCW . . . D 2 146.324 111.475 109.035 1 14.05 ? O2P PCW 1703 A 1 
HETATM 44 O O3P PCW . . . D 2 144.761 110.448 107.339 1 14.05 ? O3P PCW 1703 A 1 
HETATM 45 O O4P PCW . . . D 2 146.852 111.615 106.575 1 14.05 ? O4P PCW 1703 A 1 
HETATM 46 P P PCW . . . D 2 146.294 110.683 107.758 1 14.05 ? P PCW 1703 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           216 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           46 
#