data_8PDA # _model_server_result.job_id coCTEyCBaUt82rZIMxb00A _model_server_result.datetime_utc '2024-11-05 19:55:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pda # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1704}' # _entry.id 8PDA # _exptl.entry_id 8PDA _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 647.883 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIPALMITOYL-SN-GLYCERO-3-PHOSPHATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8PDA _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PDA _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C35 H68 O8 P -1' _chem_comp.formula_weight 647.883 _chem_comp.id PX6 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIPALMITOYL-SN-GLYCERO-3-PHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 P1 PX6 sing 413 n n O2 P1 PX6 doub 414 n n P1 O3 PX6 sing 415 n n P1 O4 PX6 sing 416 n n O3 H1 PX6 sing 417 n n O4 C1 PX6 sing 418 n n C1 C2 PX6 sing 419 n n C1 H2 PX6 sing 420 n n C1 H3 PX6 sing 421 n n C2 C3 PX6 sing 422 n n C2 O7 PX6 sing 423 n n C2 H4 PX6 sing 424 n n C3 O5 PX6 sing 425 n n C3 H5 PX6 sing 426 n n C3 H6 PX6 sing 427 n n O5 C4 PX6 sing 428 n n C4 O6 PX6 doub 429 n n C4 C5 PX6 sing 430 n n C5 C6 PX6 sing 431 n n C5 H7 PX6 sing 432 n n C5 H8 PX6 sing 433 n n C6 C7 PX6 sing 434 n n C6 H9 PX6 sing 435 n n C6 H10 PX6 sing 436 n n C7 C8 PX6 sing 437 n n C7 H11 PX6 sing 438 n n C7 H12 PX6 sing 439 n n C8 C9 PX6 sing 440 n n C8 H13 PX6 sing 441 n n C8 H14 PX6 sing 442 n n C9 C10 PX6 sing 443 n n C9 H15 PX6 sing 444 n n C9 H16 PX6 sing 445 n n C10 C11 PX6 sing 446 n n C10 H17 PX6 sing 447 n n C10 H18 PX6 sing 448 n n C11 C12 PX6 sing 449 n n C11 H19 PX6 sing 450 n n C11 H20 PX6 sing 451 n n C12 C13 PX6 sing 452 n n C12 H21 PX6 sing 453 n n C12 H22 PX6 sing 454 n n C13 C14 PX6 sing 455 n n C13 H23 PX6 sing 456 n n C13 H24 PX6 sing 457 n n C14 C15 PX6 sing 458 n n C14 H25 PX6 sing 459 n n C14 H26 PX6 sing 460 n n C15 C16 PX6 sing 461 n n C15 H27 PX6 sing 462 n n C15 H28 PX6 sing 463 n n C16 C17 PX6 sing 464 n n C16 H29 PX6 sing 465 n n C16 H30 PX6 sing 466 n n C17 C18 PX6 sing 467 n n C17 H31 PX6 sing 468 n n C17 H32 PX6 sing 469 n n C18 C19 PX6 sing 470 n n C18 H33 PX6 sing 471 n n C18 H34 PX6 sing 472 n n C19 H35 PX6 sing 473 n n C19 H36 PX6 sing 474 n n C19 H37 PX6 sing 475 n n O7 C20 PX6 sing 476 n n C20 O8 PX6 doub 477 n n C20 C21 PX6 sing 478 n n C21 C22 PX6 sing 479 n n C21 H38 PX6 sing 480 n n C21 H39 PX6 sing 481 n n C22 C23 PX6 sing 482 n n C22 H40 PX6 sing 483 n n C22 H41 PX6 sing 484 n n C23 C24 PX6 sing 485 n n C23 H42 PX6 sing 486 n n C23 H43 PX6 sing 487 n n C24 C25 PX6 sing 488 n n C24 H44 PX6 sing 489 n n C24 H45 PX6 sing 490 n n C25 C26 PX6 sing 491 n n C25 H46 PX6 sing 492 n n C25 H47 PX6 sing 493 n n C26 C27 PX6 sing 494 n n C26 H48 PX6 sing 495 n n C26 H49 PX6 sing 496 n n C27 C28 PX6 sing 497 n n C27 H50 PX6 sing 498 n n C27 H51 PX6 sing 499 n n C28 C29 PX6 sing 500 n n C28 H52 PX6 sing 501 n n C28 H53 PX6 sing 502 n n C29 C30 PX6 sing 503 n n C29 H54 PX6 sing 504 n n C29 H55 PX6 sing 505 n n C30 C31 PX6 sing 506 n n C30 H56 PX6 sing 507 n n C30 H57 PX6 sing 508 n n C31 C32 PX6 sing 509 n n C31 H58 PX6 sing 510 n n C31 H59 PX6 sing 511 n n C32 C33 PX6 sing 512 n n C32 H60 PX6 sing 513 n n C32 H61 PX6 sing 514 n n C33 C34 PX6 sing 515 n n C33 H62 PX6 sing 516 n n C33 H63 PX6 sing 517 n n C34 C35 PX6 sing 518 n n C34 H64 PX6 sing 519 n n C34 H65 PX6 sing 520 n n C35 H66 PX6 sing 521 n n C35 H67 PX6 sing 522 n n C35 H68 PX6 sing 523 n n # _atom_sites.entry_id 8PDA _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PCW A 1 1701 1701 PCW PCW . C 2 PCW A 1 1702 1801 PCW PCW . D 2 PCW A 1 1703 1901 PCW PCW . E 3 PX6 A 1 1704 2101 PX6 PX6 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PX6 . . . E 3 140.881 123.918 79.734 1 28.81 ? O1 PX6 1704 A 1 HETATM 2 O O2 PX6 . . . E 3 140.386 121.461 80.057 1 28.81 ? O2 PX6 1704 A 1 HETATM 3 P P1 PX6 . . . E 3 140.231 122.865 80.611 1 28.81 ? P1 PX6 1704 A 1 HETATM 4 O O3 PX6 . . . E 3 138.797 123.201 80.972 1 28.81 ? O3 PX6 1704 A 1 HETATM 5 O O4 PX6 . . . E 3 141.054 122.884 82 1 28.81 ? O4 PX6 1704 A 1 HETATM 6 C C1 PX6 . . . E 3 140.654 121.983 83.069 1 28.81 ? C1 PX6 1704 A 1 HETATM 7 C C2 PX6 . . . E 3 141.635 122.132 84.211 1 28.81 ? C2 PX6 1704 A 1 HETATM 8 C C3 PX6 . . . E 3 141.645 123.518 84.813 1 28.81 ? C3 PX6 1704 A 1 HETATM 9 O O5 PX6 . . . E 3 140.443 123.67 85.598 1 28.81 ? O5 PX6 1704 A 1 HETATM 10 C C4 PX6 . . . E 3 140.362 124.756 86.359 1 28.81 ? C4 PX6 1704 A 1 HETATM 11 O O6 PX6 . . . E 3 141.097 125.701 86.243 1 28.81 ? O6 PX6 1704 A 1 HETATM 12 C C5 PX6 . . . E 3 139.281 124.611 87.393 1 28.81 ? C5 PX6 1704 A 1 HETATM 13 C C6 PX6 . . . E 3 138.481 123.356 87.228 1 28.81 ? C6 PX6 1704 A 1 HETATM 14 C C7 PX6 . . . E 3 137.651 123.015 88.454 1 28.81 ? C7 PX6 1704 A 1 HETATM 15 C C8 PX6 . . . E 3 136.724 121.84 88.253 1 28.81 ? C8 PX6 1704 A 1 HETATM 16 C C9 PX6 . . . E 3 136.066 121.329 89.512 1 28.81 ? C9 PX6 1704 A 1 HETATM 17 C C10 PX6 . . . E 3 137.004 120.631 90.468 1 28.81 ? C10 PX6 1704 A 1 HETATM 18 C C11 PX6 . . . E 3 136.308 119.918 91.601 1 28.81 ? C11 PX6 1704 A 1 HETATM 19 C C12 PX6 . . . E 3 137.213 119.066 92.457 1 28.81 ? C12 PX6 1704 A 1 HETATM 20 C C13 PX6 . . . E 3 138.174 119.84 93.325 1 28.81 ? C13 PX6 1704 A 1 HETATM 21 C C14 PX6 . . . E 3 137.507 120.697 94.372 1 28.81 ? C14 PX6 1704 A 1 HETATM 22 C C15 PX6 . . . E 3 138.465 121.356 95.334 1 28.81 ? C15 PX6 1704 A 1 HETATM 23 C C16 PX6 . . . E 3 137.806 122.25 96.354 1 28.81 ? C16 PX6 1704 A 1 HETATM 24 C C17 PX6 . . . E 3 137.094 123.442 95.764 1 28.81 ? C17 PX6 1704 A 1 HETATM 25 O O7 PX6 . . . E 3 141.332 121.209 85.297 1 28.81 ? O7 PX6 1704 A 1 HETATM 26 C C20 PX6 . . . E 3 141.542 119.894 85.122 1 28.81 ? C20 PX6 1704 A 1 HETATM 27 O O8 PX6 . . . E 3 141.829 119.4 84.063 1 28.81 ? O8 PX6 1704 A 1 HETATM 28 C C21 PX6 . . . E 3 141.427 119.122 86.409 1 28.81 ? C21 PX6 1704 A 1 HETATM 29 C C22 PX6 . . . E 3 140.276 118.165 86.435 1 28.81 ? C22 PX6 1704 A 1 HETATM 30 C C23 PX6 . . . E 3 140.339 117.205 87.614 1 28.81 ? C23 PX6 1704 A 1 HETATM 31 C C24 PX6 . . . E 3 139.177 116.243 87.684 1 28.81 ? C24 PX6 1704 A 1 HETATM 32 C C25 PX6 . . . E 3 139.409 115.031 88.555 1 28.81 ? C25 PX6 1704 A 1 HETATM 33 C C26 PX6 . . . E 3 139.575 115.315 90.028 1 28.81 ? C26 PX6 1704 A 1 HETATM 34 C C27 PX6 . . . E 3 139.807 114.074 90.858 1 28.81 ? C27 PX6 1704 A 1 HETATM 35 C C28 PX6 . . . E 3 139.964 114.315 92.34 1 28.81 ? C28 PX6 1704 A 1 HETATM 36 C C29 PX6 . . . E 3 138.724 114.827 93.032 1 28.81 ? C29 PX6 1704 A 1 HETATM 37 C C30 PX6 . . . E 3 138.872 114.963 94.529 1 28.81 ? C30 PX6 1704 A 1 HETATM 38 C C31 PX6 . . . E 3 137.655 115.513 95.232 1 28.81 ? C31 PX6 1704 A 1 HETATM 39 C C32 PX6 . . . E 3 136.416 114.662 95.1 1 28.81 ? C32 PX6 1704 A 1 HETATM 40 C C33 PX6 . . . E 3 135.206 115.219 95.81 1 28.81 ? C33 PX6 1704 A 1 HETATM 41 C C34 PX6 . . . E 3 133.953 114.394 95.663 1 28.81 ? C34 PX6 1704 A 1 HETATM 42 C C35 PX6 . . . E 3 132.754 114.973 96.375 1 28.81 ? C35 PX6 1704 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 42 #