data_8PDC
#
_model_server_result.job_id            e48eHj2rpJZC6-VWeIy1_A 
_model_server_result.datetime_utc      '2024-10-10 09:23:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8pdc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1302}' 
#
_entry.id    8PDC 
#
_exptl.entry_id    8PDC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              66.007 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'BERYLLIUM TRIFLUORIDE ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8PDC 
_cell.length_a            57.251 
_cell.length_b            57.469 
_cell.length_c            68.975 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8PDC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B OD1 ASP 24 A ASP 1172 1_555 C MG MG . A MG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? 
metalc ? metalc2 B OD2 ASP 73 A ASP 1221 1_555 C MG MG . A MG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
metalc ? metalc3 B OD1 ASP 73 A ASP 1221 1_555 D BE BEF . A BEF 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? 
metalc ? metalc4 B O GLN 75 A GLN 1223 1_555 C MG MG . A MG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
metalc ? metalc5 C MG MG . A MG 1301 1_555 F O HOH . A HOH 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc6 C MG MG . A MG 1301 1_555 F O HOH . A HOH 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
#
_chem_comp.formula           'Be F3 -1' 
_chem_comp.formula_weight    66.007 
_chem_comp.id                BEF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'BERYLLIUM TRIFLUORIDE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
BE F1 BEF sing 70 n n 
BE F2 BEF sing 71 n n 
BE F3 BEF sing 72 n n 
#
_atom_sites.entry_id                     8PDC 
_atom_sites.fract_transf_matrix[1][1]    0.017467 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017401 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014498 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MG A 1 1301 1343 MG MG . 
D 4 BEF A 1 1302 1443 BEF BFD . 
E 5 HOH B 1 201 21 HOH HOH . 
E 5 HOH B 2 202 1 HOH HOH . 
E 5 HOH B 3 203 25 HOH HOH . 
E 5 HOH B 4 204 16 HOH HOH . 
E 5 HOH B 5 205 26 HOH HOH . 
E 5 HOH B 6 206 20 HOH HOH . 
E 5 HOH B 7 207 28 HOH HOH . 
F 5 HOH A 1 1401 30 HOH HOH . 
F 5 HOH A 2 1402 7 HOH HOH . 
F 5 HOH A 3 1403 22 HOH HOH . 
F 5 HOH A 4 1404 3 HOH HOH . 
F 5 HOH A 5 1405 13 HOH HOH . 
F 5 HOH A 6 1406 17 HOH HOH . 
F 5 HOH A 7 1407 19 HOH HOH . 
F 5 HOH A 8 1408 9 HOH HOH . 
F 5 HOH A 9 1409 29 HOH HOH . 
F 5 HOH A 10 1410 11 HOH HOH . 
F 5 HOH A 11 1411 27 HOH HOH . 
F 5 HOH A 12 1412 6 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 BE BE BEF . . . D 4 -21.123 6.431 7.868 1 29.82 ? BE BEF 1302 A 1 
HETATM 2 F F1 BEF . . . D 4 -19.889 5.787 7.334 1 29.37 ? F1 BEF 1302 A 1 
HETATM 3 F F2 BEF . . . D 4 -21.983 6.786 6.689 1 31.6 ? F2 BEF 1302 A 1 
HETATM 4 F F3 BEF . . . D 4 -21.92 5.706 8.91 1 28.54 ? F3 BEF 1302 A 1 
#
_model_server_stats.io_time_ms              68 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           260 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#