data_8PDK # _model_server_result.job_id o2JY9nBDO-7lhZJF7oSxKw _model_server_result.datetime_utc '2024-11-07 13:01:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pdk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":358}' # _entry.id 8PDK # _exptl.entry_id 8PDK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 13 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8PDK _cell.length_a 108.138 _cell.length_b 108.138 _cell.length_c 87.922 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PDK _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall 'R 3' _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 T N N ? 4 U N N ? 4 V N N ? 4 W N N ? 4 X N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id G _struct_conn.ptnr1_label_atom_id CH3 _struct_conn.ptnr1_label_comp_id ACT _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ACT _struct_conn.ptnr1_auth_seq_id 354 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id J _struct_conn.ptnr2_label_atom_id OXT _struct_conn.ptnr2_label_comp_id ACT _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id ACT _struct_conn.ptnr2_auth_seq_id 357 _struct_conn.ptnr2_symmetry 2_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.376 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACT doub 1 n n C OXT ACT sing 2 n n C CH3 ACT sing 3 n n CH3 H1 ACT sing 4 n n CH3 H2 ACT sing 5 n n CH3 H3 ACT sing 6 n n # _atom_sites.entry_id 8PDK _atom_sites.fract_transf_matrix[1][1] 0.009247 _atom_sites.fract_transf_matrix[1][2] 0.005339 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010678 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011374 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 C2E A 1 350 201 C2E C2E . D 3 SO4 A 1 351 1 SO4 SO4 . E 3 SO4 A 1 352 5 SO4 SO4 . F 3 SO4 A 1 353 7 SO4 SO4 . G 4 ACT A 1 354 3 ACT ACT . H 4 ACT A 1 355 5 ACT ACT . I 4 ACT A 1 356 7 ACT ACT . J 4 ACT A 1 357 8 ACT ACT . K 4 ACT A 1 358 9 ACT ACT . L 4 ACT A 1 359 14 ACT ACT . M 4 ACT A 1 360 15 ACT ACT . N 4 ACT A 1 361 16 ACT ACT . O 2 C2E B 1 350 201 C2E C2E . P 3 SO4 B 1 351 2 SO4 SO4 . Q 3 SO4 B 1 352 3 SO4 SO4 . R 3 SO4 B 1 353 4 SO4 SO4 . S 3 SO4 B 1 354 6 SO4 SO4 . T 4 ACT B 1 355 2 ACT ACT . U 4 ACT B 1 356 10 ACT ACT . V 4 ACT B 1 357 11 ACT ACT . W 4 ACT B 1 358 12 ACT ACT . X 4 ACT B 1 359 13 ACT ACT . Y 5 HOH A 1 400 142 HOH HOH . Y 5 HOH A 2 401 182 HOH HOH . Y 5 HOH A 3 402 18 HOH HOH . Y 5 HOH A 4 403 19 HOH HOH . Y 5 HOH A 5 404 131 HOH HOH . Y 5 HOH A 6 405 1 HOH HOH . Y 5 HOH A 7 406 170 HOH HOH . Y 5 HOH A 8 407 33 HOH HOH . Y 5 HOH A 9 408 44 HOH HOH . Y 5 HOH A 10 409 140 HOH HOH . Y 5 HOH A 11 410 29 HOH HOH . Y 5 HOH A 12 411 105 HOH HOH . Y 5 HOH A 13 412 15 HOH HOH . Y 5 HOH A 14 413 88 HOH HOH . Y 5 HOH A 15 414 52 HOH HOH . Y 5 HOH A 16 415 54 HOH HOH . Y 5 HOH A 17 416 6 HOH HOH . Y 5 HOH A 18 417 13 HOH HOH . Y 5 HOH A 19 418 48 HOH HOH . Y 5 HOH A 20 419 72 HOH HOH . Y 5 HOH A 21 420 7 HOH HOH . Y 5 HOH A 22 421 49 HOH HOH . Y 5 HOH A 23 422 146 HOH HOH . Y 5 HOH A 24 423 53 HOH HOH . Y 5 HOH A 25 424 11 HOH HOH . Y 5 HOH A 26 425 5 HOH HOH . Y 5 HOH A 27 426 70 HOH HOH . Y 5 HOH A 28 427 96 HOH HOH . Y 5 HOH A 29 428 50 HOH HOH . Y 5 HOH A 30 429 81 HOH HOH . Y 5 HOH A 31 430 91 HOH HOH . Y 5 HOH A 32 431 109 HOH HOH . Y 5 HOH A 33 432 55 HOH HOH . Y 5 HOH A 34 433 12 HOH HOH . Y 5 HOH A 35 434 77 HOH HOH . Y 5 HOH A 36 435 126 HOH HOH . Y 5 HOH A 37 436 9 HOH HOH . Y 5 HOH A 38 437 35 HOH HOH . Y 5 HOH A 39 438 152 HOH HOH . Y 5 HOH A 40 439 198 HOH HOH . Y 5 HOH A 41 440 123 HOH HOH . Y 5 HOH A 42 441 14 HOH HOH . Y 5 HOH A 43 442 4 HOH HOH . Y 5 HOH A 44 443 22 HOH HOH . Y 5 HOH A 45 444 118 HOH HOH . Y 5 HOH A 46 445 114 HOH HOH . Y 5 HOH A 47 446 78 HOH HOH . Y 5 HOH A 48 447 196 HOH HOH . Y 5 HOH A 49 448 21 HOH HOH . Y 5 HOH A 50 449 51 HOH HOH . Y 5 HOH A 51 450 204 HOH HOH . Y 5 HOH A 52 451 28 HOH HOH . Y 5 HOH A 53 452 69 HOH HOH . Y 5 HOH A 54 453 191 HOH HOH . Y 5 HOH A 55 454 99 HOH HOH . Y 5 HOH A 56 455 203 HOH HOH . Y 5 HOH A 57 456 144 HOH HOH . Y 5 HOH A 58 457 202 HOH HOH . Y 5 HOH A 59 458 132 HOH HOH . Y 5 HOH A 60 459 145 HOH HOH . Y 5 HOH A 61 460 156 HOH HOH . Y 5 HOH A 62 461 73 HOH HOH . Y 5 HOH A 63 462 86 HOH HOH . Y 5 HOH A 64 463 183 HOH HOH . Y 5 HOH A 65 464 63 HOH HOH . Y 5 HOH A 66 465 154 HOH HOH . Y 5 HOH A 67 466 106 HOH HOH . Y 5 HOH A 68 467 36 HOH HOH . Y 5 HOH A 69 468 189 HOH HOH . Y 5 HOH A 70 469 193 HOH HOH . Y 5 HOH A 71 470 178 HOH HOH . Y 5 HOH A 72 471 138 HOH HOH . Y 5 HOH A 73 472 185 HOH HOH . Y 5 HOH A 74 473 42 HOH HOH . Y 5 HOH A 75 474 194 HOH HOH . Y 5 HOH A 76 475 169 HOH HOH . Y 5 HOH A 77 476 143 HOH HOH . Y 5 HOH A 78 477 141 HOH HOH . Y 5 HOH A 79 478 148 HOH HOH . Y 5 HOH A 80 479 171 HOH HOH . Y 5 HOH A 81 480 176 HOH HOH . Y 5 HOH A 82 481 192 HOH HOH . Z 5 HOH B 1 400 94 HOH HOH . Z 5 HOH B 2 401 103 HOH HOH . Z 5 HOH B 3 402 173 HOH HOH . Z 5 HOH B 4 403 66 HOH HOH . Z 5 HOH B 5 404 58 HOH HOH . Z 5 HOH B 6 405 83 HOH HOH . Z 5 HOH B 7 406 90 HOH HOH . Z 5 HOH B 8 407 65 HOH HOH . Z 5 HOH B 9 408 43 HOH HOH . Z 5 HOH B 10 409 37 HOH HOH . Z 5 HOH B 11 410 129 HOH HOH . Z 5 HOH B 12 411 62 HOH HOH . Z 5 HOH B 13 412 10 HOH HOH . Z 5 HOH B 14 413 111 HOH HOH . Z 5 HOH B 15 414 38 HOH HOH . Z 5 HOH B 16 415 59 HOH HOH . Z 5 HOH B 17 416 89 HOH HOH . Z 5 HOH B 18 417 25 HOH HOH . Z 5 HOH B 19 418 56 HOH HOH . Z 5 HOH B 20 419 61 HOH HOH . Z 5 HOH B 21 420 166 HOH HOH . Z 5 HOH B 22 421 137 HOH HOH . Z 5 HOH B 23 422 46 HOH HOH . Z 5 HOH B 24 423 82 HOH HOH . Z 5 HOH B 25 424 20 HOH HOH . Z 5 HOH B 26 425 136 HOH HOH . Z 5 HOH B 27 426 163 HOH HOH . Z 5 HOH B 28 427 117 HOH HOH . Z 5 HOH B 29 428 190 HOH HOH . Z 5 HOH B 30 429 165 HOH HOH . Z 5 HOH B 31 430 92 HOH HOH . Z 5 HOH B 32 431 153 HOH HOH . Z 5 HOH B 33 432 23 HOH HOH . Z 5 HOH B 34 433 98 HOH HOH . Z 5 HOH B 35 434 3 HOH HOH . Z 5 HOH B 36 435 110 HOH HOH . Z 5 HOH B 37 436 74 HOH HOH . Z 5 HOH B 38 437 122 HOH HOH . Z 5 HOH B 39 438 57 HOH HOH . Z 5 HOH B 40 439 68 HOH HOH . Z 5 HOH B 41 440 175 HOH HOH . Z 5 HOH B 42 441 197 HOH HOH . Z 5 HOH B 43 442 120 HOH HOH . Z 5 HOH B 44 443 201 HOH HOH . Z 5 HOH B 45 444 41 HOH HOH . Z 5 HOH B 46 445 47 HOH HOH . Z 5 HOH B 47 446 115 HOH HOH . Z 5 HOH B 48 447 17 HOH HOH . Z 5 HOH B 49 448 45 HOH HOH . Z 5 HOH B 50 449 16 HOH HOH . Z 5 HOH B 51 450 121 HOH HOH . Z 5 HOH B 52 451 199 HOH HOH . Z 5 HOH B 53 452 39 HOH HOH . Z 5 HOH B 54 453 158 HOH HOH . Z 5 HOH B 55 454 167 HOH HOH . Z 5 HOH B 56 455 125 HOH HOH . Z 5 HOH B 57 456 30 HOH HOH . Z 5 HOH B 58 457 79 HOH HOH . Z 5 HOH B 59 458 32 HOH HOH . Z 5 HOH B 60 459 95 HOH HOH . Z 5 HOH B 61 460 8 HOH HOH . Z 5 HOH B 62 461 155 HOH HOH . Z 5 HOH B 63 462 2 HOH HOH . Z 5 HOH B 64 463 112 HOH HOH . Z 5 HOH B 65 464 119 HOH HOH . Z 5 HOH B 66 465 180 HOH HOH . Z 5 HOH B 67 466 181 HOH HOH . Z 5 HOH B 68 467 93 HOH HOH . Z 5 HOH B 69 468 147 HOH HOH . Z 5 HOH B 70 469 135 HOH HOH . Z 5 HOH B 71 470 24 HOH HOH . Z 5 HOH B 72 471 195 HOH HOH . Z 5 HOH B 73 472 168 HOH HOH . Z 5 HOH B 74 473 139 HOH HOH . Z 5 HOH B 75 474 149 HOH HOH . Z 5 HOH B 76 475 179 HOH HOH . Z 5 HOH B 77 476 130 HOH HOH . Z 5 HOH B 78 477 161 HOH HOH . Z 5 HOH B 79 478 102 HOH HOH . Z 5 HOH B 80 479 67 HOH HOH . Z 5 HOH B 81 480 60 HOH HOH . Z 5 HOH B 82 481 186 HOH HOH . Z 5 HOH B 83 482 151 HOH HOH . Z 5 HOH B 84 483 150 HOH HOH . Z 5 HOH B 85 484 26 HOH HOH . Z 5 HOH B 86 485 134 HOH HOH . Z 5 HOH B 87 486 200 HOH HOH . Z 5 HOH B 88 487 184 HOH HOH . Z 5 HOH B 89 488 75 HOH HOH . Z 5 HOH B 90 489 64 HOH HOH . Z 5 HOH B 91 490 71 HOH HOH . Z 5 HOH B 92 491 172 HOH HOH . Z 5 HOH B 93 492 124 HOH HOH . Z 5 HOH B 94 493 162 HOH HOH . Z 5 HOH B 95 494 187 HOH HOH . Z 5 HOH B 96 495 188 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . . . W 4 -34.938 16.289 14.449 1 69.48 ? C ACT 358 B 1 HETATM 2 O O ACT . . . W 4 -34.717 16.235 13.207 1 68.32 ? O ACT 358 B 1 HETATM 3 O OXT ACT . . . W 4 -35.928 15.856 15.088 1 66.47 ? OXT ACT 358 B 1 HETATM 4 C CH3 ACT . . . W 4 -33.817 16.986 15.304 1 74.8 ? CH3 ACT 358 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #