data_8PDU
#
_model_server_result.job_id            OnUNbYumkePfyOpBIGfzJg 
_model_server_result.datetime_utc      '2024-11-30 11:41:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8pdu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1401}' 
#
_entry.id    8PDU 
#
_exptl.entry_id    8PDU 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              345.205 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CYCLIC GUANOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8PDU 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8PDU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C10 H12 N5 O7 P' 
_chem_comp.formula_weight    345.205 
_chem_comp.id                PCG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CYCLIC GUANOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A PCG sing 235 n n 
PA O2A PCG doub 236 n n 
PA O5' PCG sing 237 n n 
PA O3' PCG sing 238 n n 
O1A HO1A PCG sing 239 n n 
O5' C5' PCG sing 240 n n 
C5' C4' PCG sing 241 n n 
C5' "H5'1" PCG sing 242 n n 
C5' "H5'2" PCG sing 243 n n 
C4' O4' PCG sing 244 n n 
C4' C3' PCG sing 245 n n 
C4' H4' PCG sing 246 n n 
O4' C1' PCG sing 247 n n 
C3' O3' PCG sing 248 n n 
C3' C2' PCG sing 249 n n 
C3' H3' PCG sing 250 n n 
C2' O2' PCG sing 251 n n 
C2' C1' PCG sing 252 n n 
C2' H2' PCG sing 253 n n 
O2' HO2' PCG sing 254 n n 
C1' N9 PCG sing 255 n n 
C1' H1' PCG sing 256 n n 
N9 C8 PCG sing 257 n y 
N9 C4 PCG sing 258 n y 
C8 N7 PCG doub 259 n y 
C8 H8 PCG sing 260 n n 
N7 C5 PCG sing 261 n y 
C5 C6 PCG sing 262 n n 
C5 C4 PCG doub 263 n y 
C6 O6 PCG doub 264 n n 
C6 N1 PCG sing 265 n n 
N1 C2 PCG sing 266 n n 
N1 HN1 PCG sing 267 n n 
C2 N2 PCG sing 268 n n 
C2 N3 PCG doub 269 n n 
N2 HN21 PCG sing 270 n n 
N2 HN22 PCG sing 271 n n 
N3 C4 PCG sing 272 n n 
#
_atom_sites.entry_id                     8PDU 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PCG A 1 1401 1201 PCG PCG . 
D 2 PCG B 1 1401 1201 PCG PCG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA PCG . . . D 2 137.491 122.12 204.263 1 201.4 ? PA PCG 1401 B 1 
HETATM 2 O O1A PCG . . . D 2 138.418 121.852 205.369 1 193.68 ? O1A PCG 1401 B 1 
HETATM 3 O O2A PCG . . . D 2 137.018 120.996 203.446 1 197.43 ? O2A PCG 1401 B 1 
HETATM 4 O O5' PCG . . . D 2 136.263 122.888 204.9 1 199.33 ? O5' PCG 1401 B 1 
HETATM 5 C C5' PCG . . . D 2 135.223 123.108 203.96 1 199.16 ? C5' PCG 1401 B 1 
HETATM 6 C C4' PCG . . . D 2 135.828 123.448 202.615 1 199.06 ? C4' PCG 1401 B 1 
HETATM 7 O O4' PCG . . . D 2 135.076 124.418 201.936 1 201.42 ? O4' PCG 1401 B 1 
HETATM 8 C C3' PCG . . . D 2 137.118 124.177 202.878 1 197.94 ? C3' PCG 1401 B 1 
HETATM 9 O O3' PCG . . . D 2 138.103 123.203 203.223 1 196.71 ? O3' PCG 1401 B 1 
HETATM 10 C C2' PCG . . . D 2 137.361 124.847 201.532 1 195.42 ? C2' PCG 1401 B 1 
HETATM 11 O O2' PCG . . . D 2 138.349 124.117 200.794 1 198.16 ? O2' PCG 1401 B 1 
HETATM 12 C C1' PCG . . . D 2 135.971 124.758 200.871 1 198.1 ? C1' PCG 1401 B 1 
HETATM 13 N N9 PCG . . . D 2 135.405 126.022 200.371 1 198.21 ? N9 PCG 1401 B 1 
HETATM 14 C C8 PCG . . . D 2 135.154 126.323 199.103 1 195.43 ? C8 PCG 1401 B 1 
HETATM 15 N N7 PCG . . . D 2 134.621 127.536 199.062 1 195.98 ? N7 PCG 1401 B 1 
HETATM 16 C C5 PCG . . . D 2 134.528 127.983 200.309 1 197.36 ? C5 PCG 1401 B 1 
HETATM 17 C C6 PCG . . . D 2 134.068 129.134 200.789 1 195.72 ? C6 PCG 1401 B 1 
HETATM 18 O O6 PCG . . . D 2 133.629 130 200.035 1 192.61 ? O6 PCG 1401 B 1 
HETATM 19 N N1 PCG . . . D 2 134.087 129.355 202.165 1 194.48 ? N1 PCG 1401 B 1 
HETATM 20 C C2 PCG . . . D 2 134.589 128.355 202.995 1 194.83 ? C2 PCG 1401 B 1 
HETATM 21 N N2 PCG . . . D 2 134.623 128.532 204.309 1 193.22 ? N2 PCG 1401 B 1 
HETATM 22 N N3 PCG . . . D 2 135.039 127.22 202.452 1 196.54 ? N3 PCG 1401 B 1 
HETATM 23 C C4 PCG . . . D 2 135.005 127.04 201.124 1 197.87 ? C4 PCG 1401 B 1 
#
_model_server_stats.io_time_ms              67 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           23 
#