data_8PDV
#
_model_server_result.job_id            p5H6nTQ8JZIbkY65RdHjEA 
_model_server_result.datetime_utc      '2024-10-19 15:36:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8pdv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1401}' 
#
_entry.id    8PDV 
#
_exptl.entry_id    8PDV 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              345.205 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CYCLIC GUANOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8PDV 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8PDV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H12 N5 O7 P' 
_chem_comp.formula_weight    345.205 
_chem_comp.id                PCG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CYCLIC GUANOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A PCG sing 235 n n 
PA O2A PCG doub 236 n n 
PA O5' PCG sing 237 n n 
PA O3' PCG sing 238 n n 
O1A HO1A PCG sing 239 n n 
O5' C5' PCG sing 240 n n 
C5' C4' PCG sing 241 n n 
C5' "H5'1" PCG sing 242 n n 
C5' "H5'2" PCG sing 243 n n 
C4' O4' PCG sing 244 n n 
C4' C3' PCG sing 245 n n 
C4' H4' PCG sing 246 n n 
O4' C1' PCG sing 247 n n 
C3' O3' PCG sing 248 n n 
C3' C2' PCG sing 249 n n 
C3' H3' PCG sing 250 n n 
C2' O2' PCG sing 251 n n 
C2' C1' PCG sing 252 n n 
C2' H2' PCG sing 253 n n 
O2' HO2' PCG sing 254 n n 
C1' N9 PCG sing 255 n n 
C1' H1' PCG sing 256 n n 
N9 C8 PCG sing 257 n y 
N9 C4 PCG sing 258 n y 
C8 N7 PCG doub 259 n y 
C8 H8 PCG sing 260 n n 
N7 C5 PCG sing 261 n y 
C5 C6 PCG sing 262 n n 
C5 C4 PCG doub 263 n y 
C6 O6 PCG doub 264 n n 
C6 N1 PCG sing 265 n n 
N1 C2 PCG sing 266 n n 
N1 HN1 PCG sing 267 n n 
C2 N2 PCG sing 268 n n 
C2 N3 PCG doub 269 n n 
N2 HN21 PCG sing 270 n n 
N2 HN22 PCG sing 271 n n 
N3 C4 PCG sing 272 n n 
#
_atom_sites.entry_id                     8PDV 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          B 
_pdbx_nonpoly_scheme.entity_id        2 
_pdbx_nonpoly_scheme.mon_id           PCG 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      1401 
_pdbx_nonpoly_scheme.auth_seq_num     1201 
_pdbx_nonpoly_scheme.pdb_mon_id       PCG 
_pdbx_nonpoly_scheme.auth_mon_id      PCG 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA PCG . . . B 2 155.543 167.147 192.129 1 145.55 ? PA PCG 1401 A 1 
HETATM 2 O O1A PCG . . . B 2 155.116 166.656 193.445 1 134.57 ? O1A PCG 1401 A 1 
HETATM 3 O O2A PCG . . . B 2 155.648 168.589 191.899 1 136.41 ? O2A PCG 1401 A 1 
HETATM 4 O O5' PCG . . . B 2 156.948 166.495 191.768 1 134.6 ? O5' PCG 1401 A 1 
HETATM 5 C C5' PCG . . . B 2 157.431 166.734 190.46 1 131.76 ? C5' PCG 1401 A 1 
HETATM 6 C C4' PCG . . . B 2 156.305 166.498 189.518 1 130.32 ? C4' PCG 1401 A 1 
HETATM 7 O O4' PCG . . . B 2 156.725 165.684 188.452 1 125.22 ? O4' PCG 1401 A 1 
HETATM 8 C C3' PCG . . . B 2 155.285 165.628 190.191 1 133.12 ? C3' PCG 1401 A 1 
HETATM 9 O O3' PCG . . . B 2 154.545 166.478 191.061 1 134.19 ? O3' PCG 1401 A 1 
HETATM 10 C C2' PCG . . . B 2 154.473 165.18 189.01 1 130.94 ? C2' PCG 1401 A 1 
HETATM 11 O O2' PCG . . . B 2 153.392 166.063 188.776 1 126.41 ? O2' PCG 1401 A 1 
HETATM 12 C C1' PCG . . . B 2 155.476 165.285 187.863 1 132.53 ? C1' PCG 1401 A 1 
HETATM 13 N N9 PCG . . . B 2 155.618 163.976 187.3 1 135.6 ? N9 PCG 1401 A 1 
HETATM 14 C C8 PCG . . . B 2 155.052 163.54 186.188 1 131.27 ? C8 PCG 1401 A 1 
HETATM 15 N N7 PCG . . . B 2 155.426 162.275 186.031 1 127.63 ? N7 PCG 1401 A 1 
HETATM 16 C C5 PCG . . . B 2 156.213 161.947 187.054 1 129.88 ? C5 PCG 1401 A 1 
HETATM 17 C C6 PCG . . . B 2 156.834 160.821 187.359 1 129.08 ? C6 PCG 1401 A 1 
HETATM 18 O O6 PCG . . . B 2 156.731 159.839 186.631 1 126.91 ? O6 PCG 1401 A 1 
HETATM 19 N N1 PCG . . . B 2 157.61 160.75 188.514 1 130.84 ? N1 PCG 1401 A 1 
HETATM 20 C C2 PCG . . . B 2 157.709 161.876 189.32 1 131.41 ? C2 PCG 1401 A 1 
HETATM 21 N N2 PCG . . . B 2 158.437 161.868 190.43 1 129.63 ? N2 PCG 1401 A 1 
HETATM 22 N N3 PCG . . . B 2 157.06 162.979 188.961 1 131.78 ? N3 PCG 1401 A 1 
HETATM 23 C C4 PCG . . . B 2 156.328 163.007 187.844 1 132.69 ? C4 PCG 1401 A 1 
#
_model_server_stats.io_time_ms              47 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           23 
#