data_8PEC # _model_server_result.job_id rCrfZnnkDkJHI68eKHsKlw _model_server_result.datetime_utc '2024-11-28 23:15:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pec # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 8PEC # _exptl.entry_id 8PEC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 549.6 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-({(2R)-2-[(1R)-1-{[(2Z)-2-(2-amino-1,3-thiazol-4-yl)-2-{[(2-carboxypropan-2-yl)oxy]imino}acetyl]amino}-2-oxoethyl]-4-carboxy-3,6-dihydro-2H-1,3-thiazin-5-yl}methyl)pyridinium _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8PEC _cell.length_a 202.147 _cell.length_b 202.147 _cell.length_c 55.699 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PEC _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall 'P 61' _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,J,K 1 1 C,D,G,H,I,L,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 47 A SER 70 1_555 E C CTJ . A CTJ 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale2 C OG SER 47 C SER 70 1_555 G C CTJ . C CTJ 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.371 ? covale ? covale3 C NH1 ARG 227 C ARG 250 1_555 G O4B CTJ . C CTJ 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.3 ? covale ? covale4 D OG SER 47 D SER 70 1_555 I C CTJ . D CTJ 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale5 D NH2 ARG 227 D ARG 250 1_555 I O4A CTJ . D CTJ 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.301 ? # _chem_comp.formula 'C22 H25 N6 O7 S2 1' _chem_comp.formula_weight 549.6 _chem_comp.id CTJ _chem_comp.mon_nstd_flag . _chem_comp.name 1-({(2R)-2-[(1R)-1-{[(2Z)-2-(2-amino-1,3-thiazol-4-yl)-2-{[(2-carboxypropan-2-yl)oxy]imino}acetyl]amino}-2-oxoethyl]-4-carboxy-3,6-dihydro-2H-1,3-thiazin-5-yl}methyl)pyridinium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O CTJ doub 70 n n C CA CTJ sing 71 n n C H CTJ sing 72 n n S1 C2 CTJ sing 73 n n S1 C6 CTJ sing 74 n n C2 C3 CTJ sing 75 n n C2 H2 CTJ sing 76 n n C2 H2A CTJ sing 77 n n C3 C4 CTJ doub 78 n n C3 C3' CTJ sing 79 n n C4 N5 CTJ sing 80 n n C4 C4' CTJ sing 81 n n N5 C6 CTJ sing 82 n n N5 HN5 CTJ sing 83 n n C6 CA CTJ sing 84 n n C6 H6 CTJ sing 85 n n CA N10 CTJ sing 86 n n CA HA CTJ sing 87 n n N10 C11 CTJ sing 88 n n N10 HN10 CTJ sing 89 n n C11 O12 CTJ doub 90 n n C11 C13 CTJ sing 91 n n C13 C14 CTJ sing 92 n n C13 N16 CTJ doub 93 z n C14 C15 CTJ doub 94 n y C14 N19 CTJ sing 95 n y C15 S16 CTJ sing 96 n y C15 H15 CTJ sing 97 n n N16 O17 CTJ sing 98 n n S16 C17 CTJ sing 99 n y C17 N18 CTJ sing 100 n n C17 N19 CTJ doub 101 n y O17 C18 CTJ sing 102 n n C18 C19 CTJ sing 103 n n C18 C20 CTJ sing 104 n n C18 C21 CTJ sing 105 n n N18 HN18 CTJ sing 106 n n N18 HN1A CTJ sing 107 n n C19 H19 CTJ sing 108 n n C19 H19A CTJ sing 109 n n C19 H19B CTJ sing 110 n n C20 H20 CTJ sing 111 n n C20 H20A CTJ sing 112 n n C20 H20B CTJ sing 113 n n C21 O2A CTJ sing 114 n n C21 O2B CTJ doub 115 n n O2A HO2A CTJ sing 116 n n C3' H3' CTJ sing 117 n n C3' "H3'A" CTJ sing 118 n n C4' O4A CTJ sing 119 n n C4' O4B CTJ doub 120 n n O4A HO4A CTJ sing 121 n n C3' N6 CTJ sing 122 n n N6 C26 CTJ doub 123 n y N6 C22 CTJ sing 124 n y C26 C25 CTJ sing 125 n y C25 C24 CTJ doub 126 n y C24 C23 CTJ sing 127 n y C23 C22 CTJ doub 128 n y C26 H26 CTJ sing 129 n n C25 H25 CTJ sing 130 n n C24 H24 CTJ sing 131 n n C23 H23 CTJ sing 132 n n C22 H22 CTJ sing 133 n n # _atom_sites.entry_id 8PEC _atom_sites.fract_transf_matrix[1][1] 0.004947 _atom_sites.fract_transf_matrix[1][2] 0.002856 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005712 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017954 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 CTJ A 1 301 301 CTJ CTJ . F 3 CL A 1 302 2 CL CL . G 2 CTJ C 1 301 303 CTJ CTJ . H 3 CL C 1 302 1 CL CL . I 2 CTJ D 1 301 304 CTJ CTJ . J 4 HOH A 1 401 70 HOH HOH . J 4 HOH A 2 402 11 HOH HOH . J 4 HOH A 3 403 9 HOH HOH . J 4 HOH A 4 404 6 HOH HOH . J 4 HOH A 5 405 74 HOH HOH . J 4 HOH A 6 406 76 HOH HOH . J 4 HOH A 7 407 31 HOH HOH . J 4 HOH A 8 408 15 HOH HOH . J 4 HOH A 9 409 78 HOH HOH . J 4 HOH A 10 410 13 HOH HOH . J 4 HOH A 11 411 23 HOH HOH . J 4 HOH A 12 412 66 HOH HOH . J 4 HOH A 13 413 62 HOH HOH . J 4 HOH A 14 414 37 HOH HOH . J 4 HOH A 15 415 20 HOH HOH . J 4 HOH A 16 416 33 HOH HOH . J 4 HOH A 17 417 58 HOH HOH . J 4 HOH A 18 418 25 HOH HOH . J 4 HOH A 19 419 30 HOH HOH . J 4 HOH A 20 420 43 HOH HOH . J 4 HOH A 21 421 72 HOH HOH . J 4 HOH A 22 422 54 HOH HOH . J 4 HOH A 23 423 82 HOH HOH . J 4 HOH A 24 424 67 HOH HOH . J 4 HOH A 25 425 55 HOH HOH . K 4 HOH B 1 301 42 HOH HOH . K 4 HOH B 2 302 86 HOH HOH . K 4 HOH B 3 303 22 HOH HOH . K 4 HOH B 4 304 60 HOH HOH . K 4 HOH B 5 305 45 HOH HOH . K 4 HOH B 6 306 53 HOH HOH . K 4 HOH B 7 307 80 HOH HOH . K 4 HOH B 8 308 2 HOH HOH . K 4 HOH B 9 309 4 HOH HOH . K 4 HOH B 10 310 44 HOH HOH . K 4 HOH B 11 311 8 HOH HOH . K 4 HOH B 12 312 64 HOH HOH . K 4 HOH B 13 313 89 HOH HOH . K 4 HOH B 14 314 69 HOH HOH . K 4 HOH B 15 315 1 HOH HOH . K 4 HOH B 16 316 85 HOH HOH . K 4 HOH B 17 317 71 HOH HOH . K 4 HOH B 18 318 41 HOH HOH . K 4 HOH B 19 319 36 HOH HOH . K 4 HOH B 20 320 63 HOH HOH . K 4 HOH B 21 321 5 HOH HOH . K 4 HOH B 22 322 14 HOH HOH . K 4 HOH B 23 323 35 HOH HOH . K 4 HOH B 24 324 56 HOH HOH . K 4 HOH B 25 325 88 HOH HOH . K 4 HOH B 26 326 52 HOH HOH . K 4 HOH B 27 327 59 HOH HOH . K 4 HOH B 28 328 84 HOH HOH . K 4 HOH B 29 329 17 HOH HOH . K 4 HOH B 30 330 47 HOH HOH . K 4 HOH B 31 331 46 HOH HOH . K 4 HOH B 32 332 16 HOH HOH . K 4 HOH B 33 333 61 HOH HOH . L 4 HOH C 1 401 75 HOH HOH . L 4 HOH C 2 402 38 HOH HOH . L 4 HOH C 3 403 83 HOH HOH . L 4 HOH C 4 404 19 HOH HOH . L 4 HOH C 5 405 79 HOH HOH . L 4 HOH C 6 406 65 HOH HOH . L 4 HOH C 7 407 49 HOH HOH . L 4 HOH C 8 408 3 HOH HOH . L 4 HOH C 9 409 18 HOH HOH . L 4 HOH C 10 410 21 HOH HOH . L 4 HOH C 11 411 39 HOH HOH . M 4 HOH D 1 401 57 HOH HOH . M 4 HOH D 2 402 51 HOH HOH . M 4 HOH D 3 403 34 HOH HOH . M 4 HOH D 4 404 50 HOH HOH . M 4 HOH D 5 405 87 HOH HOH . M 4 HOH D 6 406 26 HOH HOH . M 4 HOH D 7 407 29 HOH HOH . M 4 HOH D 8 408 28 HOH HOH . M 4 HOH D 9 409 12 HOH HOH . M 4 HOH D 10 410 48 HOH HOH . M 4 HOH D 11 411 27 HOH HOH . M 4 HOH D 12 412 81 HOH HOH . M 4 HOH D 13 413 7 HOH HOH . M 4 HOH D 14 414 10 HOH HOH . M 4 HOH D 15 415 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C CTJ . . . E 2 -44.343 38.564 -1.032 0.8 71.1 ? C CTJ 301 A 1 HETATM 2 O O CTJ . . . E 2 -44.06 38.303 0.093 0.8 69.23 ? O CTJ 301 A 1 HETATM 3 S S1 CTJ . . . E 2 -40.762 38.615 -2.506 0.7 72.74 ? S1 CTJ 301 A 1 HETATM 4 C C2 CTJ . . . E 2 -39.821 37.305 -3.192 0.92 72.06 ? C2 CTJ 301 A 1 HETATM 5 C C3 CTJ . . . E 2 -39.892 36.115 -2.461 0.83 73.97 ? C3 CTJ 301 A 1 HETATM 6 C C4 CTJ . . . E 2 -41.312 35.856 -1.482 1 72.71 ? C4 CTJ 301 A 1 HETATM 7 N N5 CTJ . . . E 2 -42.414 36.955 -1.398 0.49 72.74 ? N5 CTJ 301 A 1 HETATM 8 C C6 CTJ . . . E 2 -42.277 38.233 -2.444 0.75 72.05 ? C6 CTJ 301 A 1 HETATM 9 C CA CTJ . . . E 2 -43.343 39.283 -1.902 0.5 75.11 ? CA CTJ 301 A 1 HETATM 10 N N10 CTJ . . . E 2 -42.665 40.227 -1.096 0.94 75.93 ? N10 CTJ 301 A 1 HETATM 11 C C11 CTJ . . . E 2 -41.939 41.305 -1.722 0.8 77.78 ? C11 CTJ 301 A 1 HETATM 12 O O12 CTJ . . . E 2 -41.888 41.413 -2.905 0.1 76.57 ? O12 CTJ 301 A 1 HETATM 13 C C13 CTJ . . . E 2 -41.162 42.221 -0.788 0.36 83.04 ? C13 CTJ 301 A 1 HETATM 14 C C14 CTJ . . . E 2 -39.655 42.192 -0.869 0.75 83.84 ? C14 CTJ 301 A 1 HETATM 15 C C15 CTJ . . . E 2 -38.913 42.232 -2.096 0.45 82.95 ? C15 CTJ 301 A 1 HETATM 16 N N16 CTJ . . . E 2 -41.679 42.902 0.099 0.94 86.69 ? N16 CTJ 301 A 1 HETATM 17 S S16 CTJ . . . E 2 -37.45 42.186 -1.723 0.41 88.65 ? S16 CTJ 301 A 1 HETATM 18 C C17 CTJ . . . E 2 -37.381 42.12 -0.178 0.8 87.39 ? C17 CTJ 301 A 1 HETATM 19 O O17 CTJ . . . E 2 -43.07 42.963 0.192 1 89.31 ? O17 CTJ 301 A 1 HETATM 20 C C18 CTJ . . . E 2 -43.352 44.082 0.964 0.8 89.99 ? C18 CTJ 301 A 1 HETATM 21 N N18 CTJ . . . E 2 -36.152 42.066 0.597 0.16 90 ? N18 CTJ 301 A 1 HETATM 22 C C19 CTJ . . . E 2 -42.581 43.976 2.266 0.8 97.72 ? C19 CTJ 301 A 1 HETATM 23 N N19 CTJ . . . E 2 -38.688 42.118 0.355 0.46 87.65 ? N19 CTJ 301 A 1 HETATM 24 C C20 CTJ . . . E 2 -42.993 45.373 0.24 0.8 101.99 ? C20 CTJ 301 A 1 HETATM 25 C C21 CTJ . . . E 2 -44.824 44.068 1.22 0.8 85.65 ? C21 CTJ 301 A 1 HETATM 26 O O2A CTJ . . . E 2 -45.273 44.543 2.288 0.52 88.9 ? O2A CTJ 301 A 1 HETATM 27 O O2B CTJ . . . E 2 -45.553 43.56 0.337 0.71 86.86 ? O2B CTJ 301 A 1 HETATM 28 C C3' CTJ . . . E 2 -39.046 34.893 -2.859 1 71.47 ? C3' CTJ 301 A 1 HETATM 29 C C4' CTJ . . . E 2 -41.24 34.775 -0.398 0.4 73.61 ? C4' CTJ 301 A 1 HETATM 30 O O4A CTJ . . . E 2 -42.233 34.552 0.336 0.94 70.15 ? O4A CTJ 301 A 1 HETATM 31 O O4B CTJ . . . E 2 -40.179 34.107 -0.233 0.94 77.01 ? O4B CTJ 301 A 1 HETATM 32 H H2 CTJ . . . E 2 -40.144 37.133 -4.09 0 86.64 ? H2 CTJ 301 A 1 HETATM 33 H H2A CTJ . . . E 2 -38.893 37.584 -3.235 0 86.64 ? H2A CTJ 301 A 1 HETATM 34 H HN5 CTJ . . . E 2 -43.062 36.901 -0.836 0 87.46 ? HN5 CTJ 301 A 1 HETATM 35 H H6 CTJ . . . E 2 -42.526 38.125 -3.376 0 86.63 ? H6 CTJ 301 A 1 HETATM 36 H HA CTJ . . . E 2 -43.791 39.716 -2.646 0 90.31 ? HA CTJ 301 A 1 HETATM 37 H HN10 CTJ . . . E 2 -42.685 40.158 -0.239 0 91.29 ? HN10 CTJ 301 A 1 HETATM 38 H H15 CTJ . . . E 2 -39.264 42.278 -2.956 0 99.71 ? H15 CTJ 301 A 1 HETATM 39 H HN18 CTJ . . . E 2 -35.476 42.545 0.36 0 108.18 ? HN18 CTJ 301 A 1 HETATM 40 H HN1A CTJ . . . E 2 -36.097 41.565 1.294 0 108.18 ? HN1A CTJ 301 A 1 HETATM 41 H H19 CTJ . . . E 2 -43.057 44.402 2.99 0 117.44 ? H19 CTJ 301 A 1 HETATM 42 H H19A CTJ . . . E 2 -41.704 44.368 2.16 0 117.44 ? H19A CTJ 301 A 1 HETATM 43 H H20 CTJ . . . E 2 -43.336 45.34 -0.667 0 122.56 ? H20 CTJ 301 A 1 HETATM 44 H H20A CTJ . . . E 2 -42.028 45.474 0.217 0 122.56 ? H20A CTJ 301 A 1 HETATM 45 H H20B CTJ . . . E 2 -43.386 46.126 0.707 0 122.56 ? H20B CTJ 301 A 1 HETATM 46 N N6 CTJ . . . E 2 -37.634 35.223 -2.894 0 73 ? N6 CTJ 301 A 1 HETATM 47 H H3' CTJ . . . E 2 -39.322 34.59 -3.738 0 85.93 ? H3' CTJ 301 A 1 HETATM 48 C C26 CTJ . . . E 2 -36.852 34.727 -3.879 0.25 70.77 ? C26 CTJ 301 A 1 HETATM 49 H "H3'A" CTJ . . . E 2 -39.19 34.185 -2.212 0 85.93 ? "H3'A" CTJ 301 A 1 HETATM 50 C C25 CTJ . . . E 2 -35.505 35.052 -3.921 0.25 71.95 ? C25 CTJ 301 A 1 HETATM 51 C C24 CTJ . . . E 2 -34.973 35.869 -2.979 0.25 73.73 ? C24 CTJ 301 A 1 HETATM 52 C C23 CTJ . . . E 2 -35.756 36.373 -1.997 0.5 74.04 ? C23 CTJ 301 A 1 HETATM 53 C C22 CTJ . . . E 2 -37.102 36.037 -1.955 0.25 74.4 ? C22 CTJ 301 A 1 HETATM 54 H H26 CTJ . . . E 2 -37.217 34.17 -4.528 0 85.09 ? H26 CTJ 301 A 1 HETATM 55 H H25 CTJ . . . E 2 -34.966 34.709 -4.596 0 86.51 ? H25 CTJ 301 A 1 HETATM 56 H H24 CTJ . . . E 2 -34.068 36.084 -3.008 0 88.66 ? H24 CTJ 301 A 1 HETATM 57 H H23 CTJ . . . E 2 -35.395 36.94 -1.355 0 89.02 ? H23 CTJ 301 A 1 HETATM 58 H H22 CTJ . . . E 2 -37.642 36.374 -1.276 0 89.45 ? H22 CTJ 301 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 58 #