data_8PEM
#
_model_server_result.job_id            GddEc7_MJImItWvkq0q_kw 
_model_server_result.datetime_utc      '2024-12-01 21:36:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8pem 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    8PEM 
#
_exptl.entry_id    8PEM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              539.198 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[[(2R,3R,4R,5R)-5-(2-azanyl-6-oxidanylidene-1H-purin-9-yl)-4-fluoranyl-4-methyl-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.25 
_cell.angle_gamma         90 
_cell.entry_id            8PEM 
_cell.length_a            39.556 
_cell.length_b            41.016 
_cell.length_c            69.035 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8PEM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 150 A SER 156 1_555 E MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? 
metalc ? metalc2 B O1A AT9 . A AT9 301 1_555 E MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? 
metalc ? metalc3 B O1B AT9 . A AT9 301 1_555 E MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.952 ? 
metalc ? metalc4 B O3B AT9 . A AT9 301 1_555 E MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? 
#
_chem_comp.formula           'C11 H17 F N5 O13 P3' 
_chem_comp.formula_weight    539.198 
_chem_comp.id                AT9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[[(2R,3R,4R,5R)-5-(2-azanyl-6-oxidanylidene-1H-purin-9-yl)-4-fluoranyl-4-methyl-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     AT-9010 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1G PG AT9 doub 70 n n 
O2G PG AT9 sing 71 n n 
PG O3B AT9 sing 72 n n 
PG O3G AT9 sing 73 n n 
O3B PB AT9 sing 74 n n 
O2B PB AT9 doub 75 n n 
PB O1B AT9 sing 76 n n 
PB O3A AT9 sing 77 n n 
O3A PA AT9 sing 78 n n 
O3' C3' AT9 sing 79 n n 
O5' PA AT9 sing 80 n n 
O5' C5' AT9 sing 81 n n 
C3' C4' AT9 sing 82 n n 
C3' C2' AT9 sing 83 n n 
PA O2A AT9 doub 84 n n 
PA O1A AT9 sing 85 n n 
F4 C2' AT9 sing 86 n n 
C5' C4' AT9 sing 87 n n 
C4' O4' AT9 sing 88 n n 
C3 C2' AT9 sing 89 n n 
C2' C1' AT9 sing 90 n n 
O4' C1' AT9 sing 91 n n 
C1' N9 AT9 sing 92 n n 
N9 C8 AT9 sing 93 n y 
N9 C4 AT9 sing 94 n y 
C8 N7 AT9 doub 95 n y 
C4 N3 AT9 sing 96 n n 
C4 C5 AT9 doub 97 n y 
N3 C2 AT9 doub 98 n n 
N7 C5 AT9 sing 99 n y 
C5 C6 AT9 sing 100 n n 
C2 N2 AT9 sing 101 n n 
C2 N1 AT9 sing 102 n n 
C6 N1 AT9 sing 103 n n 
C6 O6 AT9 doub 104 n n 
C1' H1 AT9 sing 105 n n 
C3 H2 AT9 sing 106 n n 
C3 H3 AT9 sing 107 n n 
C3 H4 AT9 sing 108 n n 
C3' H5 AT9 sing 109 n n 
C4' H6 AT9 sing 110 n n 
C5' H7 AT9 sing 111 n n 
C5' H8 AT9 sing 112 n n 
C8 H9 AT9 sing 113 n n 
N1 H10 AT9 sing 114 n n 
N2 H11 AT9 sing 115 n n 
N2 H12 AT9 sing 116 n n 
O1A H13 AT9 sing 117 n n 
O1B H14 AT9 sing 118 n n 
O2G H15 AT9 sing 119 n n 
O3' H16 AT9 sing 120 n n 
O3G H17 AT9 sing 121 n n 
#
_atom_sites.entry_id                     8PEM 
_atom_sites.fract_transf_matrix[1][1]    0.025281 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002769 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.024381 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014572 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 AT9 A 1 301 271 AT9 AT9 . 
C 3 SAH A 1 302 272 SAH SAH . 
D 4 SO4 A 1 303 273 SO4 SO4 . 
E 5 MG A 1 304 274 MG MG . 
F 6 HOH A 1 401 71 HOH HOH . 
F 6 HOH A 2 402 44 HOH HOH . 
F 6 HOH A 3 403 39 HOH HOH . 
F 6 HOH A 4 404 77 HOH HOH . 
F 6 HOH A 5 405 93 HOH HOH . 
F 6 HOH A 6 406 36 HOH HOH . 
F 6 HOH A 7 407 41 HOH HOH . 
F 6 HOH A 8 408 28 HOH HOH . 
F 6 HOH A 9 409 47 HOH HOH . 
F 6 HOH A 10 410 46 HOH HOH . 
F 6 HOH A 11 411 1 HOH HOH . 
F 6 HOH A 12 412 55 HOH HOH . 
F 6 HOH A 13 413 57 HOH HOH . 
F 6 HOH A 14 414 75 HOH HOH . 
F 6 HOH A 15 415 91 HOH HOH . 
F 6 HOH A 16 416 29 HOH HOH . 
F 6 HOH A 17 417 16 HOH HOH . 
F 6 HOH A 18 418 27 HOH HOH . 
F 6 HOH A 19 419 19 HOH HOH . 
F 6 HOH A 20 420 13 HOH HOH . 
F 6 HOH A 21 421 49 HOH HOH . 
F 6 HOH A 22 422 6 HOH HOH . 
F 6 HOH A 23 423 18 HOH HOH . 
F 6 HOH A 24 424 14 HOH HOH . 
F 6 HOH A 25 425 7 HOH HOH . 
F 6 HOH A 26 426 89 HOH HOH . 
F 6 HOH A 27 427 26 HOH HOH . 
F 6 HOH A 28 428 24 HOH HOH . 
F 6 HOH A 29 429 25 HOH HOH . 
F 6 HOH A 30 430 9 HOH HOH . 
F 6 HOH A 31 431 65 HOH HOH . 
F 6 HOH A 32 432 2 HOH HOH . 
F 6 HOH A 33 433 72 HOH HOH . 
F 6 HOH A 34 434 38 HOH HOH . 
F 6 HOH A 35 435 74 HOH HOH . 
F 6 HOH A 36 436 63 HOH HOH . 
F 6 HOH A 37 437 20 HOH HOH . 
F 6 HOH A 38 438 22 HOH HOH . 
F 6 HOH A 39 439 54 HOH HOH . 
F 6 HOH A 40 440 15 HOH HOH . 
F 6 HOH A 41 441 83 HOH HOH . 
F 6 HOH A 42 442 52 HOH HOH . 
F 6 HOH A 43 443 31 HOH HOH . 
F 6 HOH A 44 444 79 HOH HOH . 
F 6 HOH A 45 445 81 HOH HOH . 
F 6 HOH A 46 446 87 HOH HOH . 
F 6 HOH A 47 447 78 HOH HOH . 
F 6 HOH A 48 448 21 HOH HOH . 
F 6 HOH A 49 449 10 HOH HOH . 
F 6 HOH A 50 450 69 HOH HOH . 
F 6 HOH A 51 451 58 HOH HOH . 
F 6 HOH A 52 452 32 HOH HOH . 
F 6 HOH A 53 453 5 HOH HOH . 
F 6 HOH A 54 454 45 HOH HOH . 
F 6 HOH A 55 455 68 HOH HOH . 
F 6 HOH A 56 456 59 HOH HOH . 
F 6 HOH A 57 457 67 HOH HOH . 
F 6 HOH A 58 458 4 HOH HOH . 
F 6 HOH A 59 459 8 HOH HOH . 
F 6 HOH A 60 460 85 HOH HOH . 
F 6 HOH A 61 461 90 HOH HOH . 
F 6 HOH A 62 462 42 HOH HOH . 
F 6 HOH A 63 463 43 HOH HOH . 
F 6 HOH A 64 464 50 HOH HOH . 
F 6 HOH A 65 465 3 HOH HOH . 
F 6 HOH A 66 466 17 HOH HOH . 
F 6 HOH A 67 467 70 HOH HOH . 
F 6 HOH A 68 468 80 HOH HOH . 
F 6 HOH A 69 469 51 HOH HOH . 
F 6 HOH A 70 470 30 HOH HOH . 
F 6 HOH A 71 471 73 HOH HOH . 
F 6 HOH A 72 472 76 HOH HOH . 
F 6 HOH A 73 473 82 HOH HOH . 
F 6 HOH A 74 474 23 HOH HOH . 
F 6 HOH A 75 475 33 HOH HOH . 
F 6 HOH A 76 476 64 HOH HOH . 
F 6 HOH A 77 477 12 HOH HOH . 
F 6 HOH A 78 478 86 HOH HOH . 
F 6 HOH A 79 479 11 HOH HOH . 
F 6 HOH A 80 480 61 HOH HOH . 
F 6 HOH A 81 481 92 HOH HOH . 
F 6 HOH A 82 482 53 HOH HOH . 
F 6 HOH A 83 483 40 HOH HOH . 
F 6 HOH A 84 484 62 HOH HOH . 
F 6 HOH A 85 485 48 HOH HOH . 
F 6 HOH A 86 486 37 HOH HOH . 
F 6 HOH A 87 487 60 HOH HOH . 
F 6 HOH A 88 488 84 HOH HOH . 
F 6 HOH A 89 489 94 HOH HOH . 
F 6 HOH A 90 490 35 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1' AT9 . . . B 2 -5.727 5.74 6.573 1 34.6 ? C1' AT9 301 A 1 
HETATM 2 C C2 AT9 . . . B 2 -7.938 6.042 2.846 1 32.32 ? C2 AT9 301 A 1 
HETATM 3 C C2' AT9 . . . B 2 -6.317 5.124 7.879 1 28.06 ? C2' AT9 301 A 1 
HETATM 4 C C3 AT9 . . . B 2 -7.409 4.089 7.732 1 29.6 ? C3 AT9 301 A 1 
HETATM 5 C C3' AT9 . . . B 2 -5.056 4.707 8.631 1 23.9 ? C3' AT9 301 A 1 
HETATM 6 C C4 AT9 . . . B 2 -6.523 5.062 4.262 1 32.1 ? C4 AT9 301 A 1 
HETATM 7 C C4' AT9 . . . B 2 -4.082 5.814 8.239 1 24.48 ? C4' AT9 301 A 1 
HETATM 8 C C5 AT9 . . . B 2 -6.253 3.994 3.434 1 37.09 ? C5 AT9 301 A 1 
HETATM 9 C C5' AT9 . . . B 2 -2.616 5.502 8.414 1 25.2 ? C5' AT9 301 A 1 
HETATM 10 C C6 AT9 . . . B 2 -6.9 3.939 2.16 1 27.24 ? C6 AT9 301 A 1 
HETATM 11 C C8 AT9 . . . B 2 -5.096 3.685 5.198 1 35.24 ? C8 AT9 301 A 1 
HETATM 12 F F4 AT9 . . . B 2 -6.859 6.232 8.585 1 27.33 ? F4 AT9 301 A 1 
HETATM 13 N N1 AT9 . . . B 2 -7.734 5.021 1.955 1 27.96 ? N1 AT9 301 A 1 
HETATM 14 N N2 AT9 . . . B 2 -8.781 7.009 2.476 1 27.46 ? N2 AT9 301 A 1 
HETATM 15 N N3 AT9 . . . B 2 -7.343 6.106 4.036 1 30.61 ? N3 AT9 301 A 1 
HETATM 16 N N7 AT9 . . . B 2 -5.351 3.131 4.034 1 34.08 ? N7 AT9 301 A 1 
HETATM 17 N N9 AT9 . . . B 2 -5.775 4.858 5.397 1 39.21 ? N9 AT9 301 A 1 
HETATM 18 O O1A AT9 . . . B 2 0.014 5.318 7.593 1 41.47 ? O1A AT9 301 A 1 
HETATM 19 O O1B AT9 . . . B 2 0.108 2.337 10.509 1 54.01 ? O1B AT9 301 A 1 
HETATM 20 O O2A AT9 . . . B 2 -0.714 3.693 5.762 1 41.02 ? O2A AT9 301 A 1 
HETATM 21 O O2B AT9 . . . B 2 1.52 1.368 8.68 1 64.63 ? O2B AT9 301 A 1 
HETATM 22 O O3' AT9 . . . B 2 -5.233 4.602 10.037 1 27.47 ? O3' AT9 301 A 1 
HETATM 23 O O3A AT9 . . . B 2 -0.331 2.883 8.103 1 53.63 ? O3A AT9 301 A 1 
HETATM 24 O O3B AT9 . . . B 2 1.732 3.808 9.199 1 71.9 ? O3B AT9 301 A 1 
HETATM 25 O O4' AT9 . . . B 2 -4.363 6.054 6.843 1 29.56 ? O4' AT9 301 A 1 
HETATM 26 O O5' AT9 . . . B 2 -2.269 4.349 7.618 1 31.61 ? O5' AT9 301 A 1 
HETATM 27 O O6 AT9 . . . B 2 -6.779 3.068 1.299 1 27.92 ? O6 AT9 301 A 1 
HETATM 28 P PA AT9 . . . B 2 -0.751 4.122 7.181 1 52.61 ? PA AT9 301 A 1 
HETATM 29 P PB AT9 . . . B 2 0.783 2.675 9.234 1 66.75 ? PB AT9 301 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           242 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           29 
#