data_8PEM # _model_server_result.job_id VtHXsnCz7HFao7vouOCrRg _model_server_result.datetime_utc '2025-07-10 20:16:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pem # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 8PEM # _exptl.entry_id 8PEM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.25 _cell.angle_gamma 90 _cell.entry_id 8PEM _cell.length_a 39.556 _cell.length_b 41.016 _cell.length_c 69.035 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PEM _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 150 A SER 156 1_555 E MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc2 B O1A AT9 . A AT9 301 1_555 E MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? metalc ? metalc3 B O1B AT9 . A AT9 301 1_555 E MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.952 ? metalc ? metalc4 B O3B AT9 . A AT9 301 1_555 E MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 390 n n S O2 SO4 doub 391 n n S O3 SO4 sing 392 n n S O4 SO4 sing 393 n n # _atom_sites.entry_id 8PEM _atom_sites.fract_transf_matrix[1][1] 0.025281 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002769 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024381 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014572 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AT9 A 1 301 271 AT9 AT9 . C 3 SAH A 1 302 272 SAH SAH . D 4 SO4 A 1 303 273 SO4 SO4 . E 5 MG A 1 304 274 MG MG . F 6 HOH A 1 401 71 HOH HOH . F 6 HOH A 2 402 44 HOH HOH . F 6 HOH A 3 403 39 HOH HOH . F 6 HOH A 4 404 77 HOH HOH . F 6 HOH A 5 405 93 HOH HOH . F 6 HOH A 6 406 36 HOH HOH . F 6 HOH A 7 407 41 HOH HOH . F 6 HOH A 8 408 28 HOH HOH . F 6 HOH A 9 409 47 HOH HOH . F 6 HOH A 10 410 46 HOH HOH . F 6 HOH A 11 411 1 HOH HOH . F 6 HOH A 12 412 55 HOH HOH . F 6 HOH A 13 413 57 HOH HOH . F 6 HOH A 14 414 75 HOH HOH . F 6 HOH A 15 415 91 HOH HOH . F 6 HOH A 16 416 29 HOH HOH . F 6 HOH A 17 417 16 HOH HOH . F 6 HOH A 18 418 27 HOH HOH . F 6 HOH A 19 419 19 HOH HOH . F 6 HOH A 20 420 13 HOH HOH . F 6 HOH A 21 421 49 HOH HOH . F 6 HOH A 22 422 6 HOH HOH . F 6 HOH A 23 423 18 HOH HOH . F 6 HOH A 24 424 14 HOH HOH . F 6 HOH A 25 425 7 HOH HOH . F 6 HOH A 26 426 89 HOH HOH . F 6 HOH A 27 427 26 HOH HOH . F 6 HOH A 28 428 24 HOH HOH . F 6 HOH A 29 429 25 HOH HOH . F 6 HOH A 30 430 9 HOH HOH . F 6 HOH A 31 431 65 HOH HOH . F 6 HOH A 32 432 2 HOH HOH . F 6 HOH A 33 433 72 HOH HOH . F 6 HOH A 34 434 38 HOH HOH . F 6 HOH A 35 435 74 HOH HOH . F 6 HOH A 36 436 63 HOH HOH . F 6 HOH A 37 437 20 HOH HOH . F 6 HOH A 38 438 22 HOH HOH . F 6 HOH A 39 439 54 HOH HOH . F 6 HOH A 40 440 15 HOH HOH . F 6 HOH A 41 441 83 HOH HOH . F 6 HOH A 42 442 52 HOH HOH . F 6 HOH A 43 443 31 HOH HOH . F 6 HOH A 44 444 79 HOH HOH . F 6 HOH A 45 445 81 HOH HOH . F 6 HOH A 46 446 87 HOH HOH . F 6 HOH A 47 447 78 HOH HOH . F 6 HOH A 48 448 21 HOH HOH . F 6 HOH A 49 449 10 HOH HOH . F 6 HOH A 50 450 69 HOH HOH . F 6 HOH A 51 451 58 HOH HOH . F 6 HOH A 52 452 32 HOH HOH . F 6 HOH A 53 453 5 HOH HOH . F 6 HOH A 54 454 45 HOH HOH . F 6 HOH A 55 455 68 HOH HOH . F 6 HOH A 56 456 59 HOH HOH . F 6 HOH A 57 457 67 HOH HOH . F 6 HOH A 58 458 4 HOH HOH . F 6 HOH A 59 459 8 HOH HOH . F 6 HOH A 60 460 85 HOH HOH . F 6 HOH A 61 461 90 HOH HOH . F 6 HOH A 62 462 42 HOH HOH . F 6 HOH A 63 463 43 HOH HOH . F 6 HOH A 64 464 50 HOH HOH . F 6 HOH A 65 465 3 HOH HOH . F 6 HOH A 66 466 17 HOH HOH . F 6 HOH A 67 467 70 HOH HOH . F 6 HOH A 68 468 80 HOH HOH . F 6 HOH A 69 469 51 HOH HOH . F 6 HOH A 70 470 30 HOH HOH . F 6 HOH A 71 471 73 HOH HOH . F 6 HOH A 72 472 76 HOH HOH . F 6 HOH A 73 473 82 HOH HOH . F 6 HOH A 74 474 23 HOH HOH . F 6 HOH A 75 475 33 HOH HOH . F 6 HOH A 76 476 64 HOH HOH . F 6 HOH A 77 477 12 HOH HOH . F 6 HOH A 78 478 86 HOH HOH . F 6 HOH A 79 479 11 HOH HOH . F 6 HOH A 80 480 61 HOH HOH . F 6 HOH A 81 481 92 HOH HOH . F 6 HOH A 82 482 53 HOH HOH . F 6 HOH A 83 483 40 HOH HOH . F 6 HOH A 84 484 62 HOH HOH . F 6 HOH A 85 485 48 HOH HOH . F 6 HOH A 86 486 37 HOH HOH . F 6 HOH A 87 487 60 HOH HOH . F 6 HOH A 88 488 84 HOH HOH . F 6 HOH A 89 489 94 HOH HOH . F 6 HOH A 90 490 35 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . D 4 -6.236 25.127 14.039 1 29.33 ? S SO4 303 A 1 HETATM 2 O O1 SO4 . . . D 4 -5.375 26.128 13.415 1 36.61 ? O1 SO4 303 A 1 HETATM 3 O O2 SO4 . . . D 4 -7.305 24.762 13.114 1 31.34 ? O2 SO4 303 A 1 HETATM 4 O O3 SO4 . . . D 4 -5.448 23.942 14.366 1 32.92 ? O3 SO4 303 A 1 HETATM 5 O O4 SO4 . . . D 4 -6.815 25.679 15.26 1 45.41 ? O4 SO4 303 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 436 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #