data_8PF9 # _model_server_result.job_id 83XN2C0BiAh_nDo5uBzalA _model_server_result.datetime_utc '2024-10-19 10:36:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pf9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 8PF9 # _exptl.entry_id 8PF9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8PF9 _cell.length_a 34.231 _cell.length_b 57.809 _cell.length_c 61.856 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PF9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D MG MG . A MG 403 1_555 F O HOH . A HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc2 D MG MG . A MG 403 1_555 F O HOH . A HOH 595 4_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc3 D MG MG . A MG 403 1_555 F O HOH . A HOH 614 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc4 D MG MG . A MG 403 1_555 F O HOH . A HOH 639 4_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc5 D MG MG . A MG 403 1_555 F O HOH . A HOH 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc6 D MG MG . A MG 403 1_555 F O HOH . A HOH 644 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc7 E MG MG . A MG 404 1_555 F O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc8 E MG MG . A MG 404 1_555 F O HOH . A HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.862 ? metalc ? metalc9 E MG MG . A MG 404 1_555 F O HOH . A HOH 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc10 E MG MG . A MG 404 1_555 F O HOH . A HOH 595 4_445 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc11 E MG MG . A MG 404 1_555 F O HOH . A HOH 644 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc12 E MG MG . A MG 404 1_555 F O HOH . A HOH 655 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8PF9 _atom_sites.fract_transf_matrix[1][1] 0.029213 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017298 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016167 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SCN A 1 401 401 SCN SCN . C 3 YJO A 1 402 1 YJO 602 . D 4 MG A 1 403 1 MG MG . E 4 MG A 1 404 2 MG MG . F 5 HOH A 1 501 27 HOH HOH . F 5 HOH A 2 502 187 HOH HOH . F 5 HOH A 3 503 88 HOH HOH . F 5 HOH A 4 504 78 HOH HOH . F 5 HOH A 5 505 192 HOH HOH . F 5 HOH A 6 506 124 HOH HOH . F 5 HOH A 7 507 147 HOH HOH . F 5 HOH A 8 508 70 HOH HOH . F 5 HOH A 9 509 24 HOH HOH . F 5 HOH A 10 510 93 HOH HOH . F 5 HOH A 11 511 48 HOH HOH . F 5 HOH A 12 512 6 HOH HOH . F 5 HOH A 13 513 43 HOH HOH . F 5 HOH A 14 514 145 HOH HOH . F 5 HOH A 15 515 81 HOH HOH . F 5 HOH A 16 516 30 HOH HOH . F 5 HOH A 17 517 92 HOH HOH . F 5 HOH A 18 518 121 HOH HOH . F 5 HOH A 19 519 26 HOH HOH . F 5 HOH A 20 520 110 HOH HOH . F 5 HOH A 21 521 149 HOH HOH . F 5 HOH A 22 522 2 HOH HOH . F 5 HOH A 23 523 176 HOH HOH . F 5 HOH A 24 524 9 HOH HOH . F 5 HOH A 25 525 74 HOH HOH . F 5 HOH A 26 526 32 HOH HOH . F 5 HOH A 27 527 174 HOH HOH . F 5 HOH A 28 528 61 HOH HOH . F 5 HOH A 29 529 109 HOH HOH . F 5 HOH A 30 530 137 HOH HOH . F 5 HOH A 31 531 168 HOH HOH . F 5 HOH A 32 532 64 HOH HOH . F 5 HOH A 33 533 40 HOH HOH . F 5 HOH A 34 534 165 HOH HOH . F 5 HOH A 35 535 21 HOH HOH . F 5 HOH A 36 536 54 HOH HOH . F 5 HOH A 37 537 71 HOH HOH . F 5 HOH A 38 538 56 HOH HOH . F 5 HOH A 39 539 23 HOH HOH . F 5 HOH A 40 540 16 HOH HOH . F 5 HOH A 41 541 117 HOH HOH . F 5 HOH A 42 542 13 HOH HOH . F 5 HOH A 43 543 8 HOH HOH . F 5 HOH A 44 544 14 HOH HOH . F 5 HOH A 45 545 190 HOH HOH . F 5 HOH A 46 546 182 HOH HOH . F 5 HOH A 47 547 1 HOH HOH . F 5 HOH A 48 548 12 HOH HOH . F 5 HOH A 49 549 29 HOH HOH . F 5 HOH A 50 550 80 HOH HOH . F 5 HOH A 51 551 188 HOH HOH . F 5 HOH A 52 552 28 HOH HOH . F 5 HOH A 53 553 18 HOH HOH . F 5 HOH A 54 554 128 HOH HOH . F 5 HOH A 55 555 191 HOH HOH . F 5 HOH A 56 556 107 HOH HOH . F 5 HOH A 57 557 3 HOH HOH . F 5 HOH A 58 558 17 HOH HOH . F 5 HOH A 59 559 167 HOH HOH . F 5 HOH A 60 560 98 HOH HOH . F 5 HOH A 61 561 79 HOH HOH . F 5 HOH A 62 562 37 HOH HOH . F 5 HOH A 63 563 138 HOH HOH . F 5 HOH A 64 564 96 HOH HOH . F 5 HOH A 65 565 75 HOH HOH . F 5 HOH A 66 566 133 HOH HOH . F 5 HOH A 67 567 45 HOH HOH . F 5 HOH A 68 568 130 HOH HOH . F 5 HOH A 69 569 11 HOH HOH . F 5 HOH A 70 570 152 HOH HOH . F 5 HOH A 71 571 108 HOH HOH . F 5 HOH A 72 572 115 HOH HOH . F 5 HOH A 73 573 183 HOH HOH . F 5 HOH A 74 574 7 HOH HOH . F 5 HOH A 75 575 67 HOH HOH . F 5 HOH A 76 576 90 HOH HOH . F 5 HOH A 77 577 101 HOH HOH . F 5 HOH A 78 578 10 HOH HOH . F 5 HOH A 79 579 189 HOH HOH . F 5 HOH A 80 580 158 HOH HOH . F 5 HOH A 81 581 126 HOH HOH . F 5 HOH A 82 582 120 HOH HOH . F 5 HOH A 83 583 69 HOH HOH . F 5 HOH A 84 584 31 HOH HOH . F 5 HOH A 85 585 36 HOH HOH . F 5 HOH A 86 586 116 HOH HOH . F 5 HOH A 87 587 50 HOH HOH . F 5 HOH A 88 588 84 HOH HOH . F 5 HOH A 89 589 139 HOH HOH . F 5 HOH A 90 590 41 HOH HOH . F 5 HOH A 91 591 58 HOH HOH . F 5 HOH A 92 592 73 HOH HOH . F 5 HOH A 93 593 105 HOH HOH . F 5 HOH A 94 594 87 HOH HOH . F 5 HOH A 95 595 193 HOH HOH . F 5 HOH A 96 596 46 HOH HOH . F 5 HOH A 97 597 15 HOH HOH . F 5 HOH A 98 598 42 HOH HOH . F 5 HOH A 99 599 111 HOH HOH . F 5 HOH A 100 600 22 HOH HOH . F 5 HOH A 101 601 140 HOH HOH . F 5 HOH A 102 602 143 HOH HOH . F 5 HOH A 103 603 103 HOH HOH . F 5 HOH A 104 604 177 HOH HOH . F 5 HOH A 105 605 123 HOH HOH . F 5 HOH A 106 606 35 HOH HOH . F 5 HOH A 107 607 59 HOH HOH . F 5 HOH A 108 608 57 HOH HOH . F 5 HOH A 109 609 85 HOH HOH . F 5 HOH A 110 610 154 HOH HOH . F 5 HOH A 111 611 114 HOH HOH . F 5 HOH A 112 612 162 HOH HOH . F 5 HOH A 113 613 185 HOH HOH . F 5 HOH A 114 614 19 HOH HOH . F 5 HOH A 115 615 51 HOH HOH . F 5 HOH A 116 616 38 HOH HOH . F 5 HOH A 117 617 4 HOH HOH . F 5 HOH A 118 618 171 HOH HOH . F 5 HOH A 119 619 95 HOH HOH . F 5 HOH A 120 620 34 HOH HOH . F 5 HOH A 121 621 178 HOH HOH . F 5 HOH A 122 622 181 HOH HOH . F 5 HOH A 123 623 135 HOH HOH . F 5 HOH A 124 624 127 HOH HOH . F 5 HOH A 125 625 172 HOH HOH . F 5 HOH A 126 626 112 HOH HOH . F 5 HOH A 127 627 76 HOH HOH . F 5 HOH A 128 628 65 HOH HOH . F 5 HOH A 129 629 99 HOH HOH . F 5 HOH A 130 630 122 HOH HOH . F 5 HOH A 131 631 53 HOH HOH . F 5 HOH A 132 632 144 HOH HOH . F 5 HOH A 133 633 146 HOH HOH . F 5 HOH A 134 634 141 HOH HOH . F 5 HOH A 135 635 180 HOH HOH . F 5 HOH A 136 636 142 HOH HOH . F 5 HOH A 137 637 20 HOH HOH . F 5 HOH A 138 638 129 HOH HOH . F 5 HOH A 139 639 44 HOH HOH . F 5 HOH A 140 640 166 HOH HOH . F 5 HOH A 141 641 86 HOH HOH . F 5 HOH A 142 642 106 HOH HOH . F 5 HOH A 143 643 72 HOH HOH . F 5 HOH A 144 644 25 HOH HOH . F 5 HOH A 145 645 148 HOH HOH . F 5 HOH A 146 646 156 HOH HOH . F 5 HOH A 147 647 118 HOH HOH . F 5 HOH A 148 648 97 HOH HOH . F 5 HOH A 149 649 63 HOH HOH . F 5 HOH A 150 650 66 HOH HOH . F 5 HOH A 151 651 170 HOH HOH . F 5 HOH A 152 652 186 HOH HOH . F 5 HOH A 153 653 39 HOH HOH . F 5 HOH A 154 654 150 HOH HOH . F 5 HOH A 155 655 132 HOH HOH . F 5 HOH A 156 656 125 HOH HOH . F 5 HOH A 157 657 77 HOH HOH . F 5 HOH A 158 658 102 HOH HOH . F 5 HOH A 159 659 89 HOH HOH . F 5 HOH A 160 660 62 HOH HOH . F 5 HOH A 161 661 184 HOH HOH . F 5 HOH A 162 662 55 HOH HOH . F 5 HOH A 163 663 151 HOH HOH . F 5 HOH A 164 664 163 HOH HOH . F 5 HOH A 165 665 91 HOH HOH . F 5 HOH A 166 666 173 HOH HOH . F 5 HOH A 167 667 100 HOH HOH . F 5 HOH A 168 668 136 HOH HOH . F 5 HOH A 169 669 161 HOH HOH . F 5 HOH A 170 670 179 HOH HOH . F 5 HOH A 171 671 134 HOH HOH . F 5 HOH A 172 672 94 HOH HOH . F 5 HOH A 173 673 119 HOH HOH . F 5 HOH A 174 674 169 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -27.32 _atom_site.Cartn_y -10.082 _atom_site.Cartn_z 9.853 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 17.64 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 403 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #