data_8PGM # _model_server_result.job_id 1hFQow2_lie19caEyqIF8g _model_server_result.datetime_utc '2024-10-11 02:22:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pgm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 8PGM # _exptl.entry_id 8PGM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.28 _cell.angle_gamma 90 _cell.entry_id 8PGM _cell.length_a 39.42 _cell.length_b 67.83 _cell.length_c 40.08 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PGM _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 114 A HIS 114 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.103 ? metalc ? metalc2 A ND1 HIS 116 A HIS 116 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.033 ? metalc ? metalc3 A OD2 ASP 118 A ASP 118 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.308 ? metalc ? metalc4 A NE2 HIS 179 A HIS 179 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.043 ? metalc ? metalc5 A SG CYS 198 A CYS 198 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.282 ? metalc ? metalc6 A NE2 HIS 240 A HIS 240 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.137 ? metalc ? metalc7 B ZN ZN . A ZN 301 1_555 F O HOH . A HOH 439 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.937 ? metalc ? metalc8 C ZN ZN . A ZN 302 1_555 D O09 YU0 . A YU0 303 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.211 ? metalc ? metalc9 C ZN ZN . A ZN 302 1_555 F O HOH . A HOH 439 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.049 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8PGM _atom_sites.fract_transf_matrix[1][1] 0.025368 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001454 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014743 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024991 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 301 ZN ZN . C 2 ZN A 1 302 302 ZN ZN . D 3 YU0 A 1 303 3062 YU0 062 . E 4 DMS A 1 304 401 DMS DMS . F 5 HOH A 1 401 86 HOH HOH . F 5 HOH A 2 402 267 HOH HOH . F 5 HOH A 3 403 20 HOH HOH . F 5 HOH A 4 404 264 HOH HOH . F 5 HOH A 5 405 196 HOH HOH . F 5 HOH A 6 406 102 HOH HOH . F 5 HOH A 7 407 223 HOH HOH . F 5 HOH A 8 408 151 HOH HOH . F 5 HOH A 9 409 252 HOH HOH . F 5 HOH A 10 410 141 HOH HOH . F 5 HOH A 11 411 105 HOH HOH . F 5 HOH A 12 412 56 HOH HOH . F 5 HOH A 13 413 211 HOH HOH . F 5 HOH A 14 414 165 HOH HOH . F 5 HOH A 15 415 111 HOH HOH . F 5 HOH A 16 416 162 HOH HOH . F 5 HOH A 17 417 192 HOH HOH . F 5 HOH A 18 418 234 HOH HOH . F 5 HOH A 19 419 44 HOH HOH . F 5 HOH A 20 420 78 HOH HOH . F 5 HOH A 21 421 120 HOH HOH . F 5 HOH A 22 422 236 HOH HOH . F 5 HOH A 23 423 214 HOH HOH . F 5 HOH A 24 424 210 HOH HOH . F 5 HOH A 25 425 253 HOH HOH . F 5 HOH A 26 426 122 HOH HOH . F 5 HOH A 27 427 207 HOH HOH . F 5 HOH A 28 428 93 HOH HOH . F 5 HOH A 29 429 38 HOH HOH . F 5 HOH A 30 430 61 HOH HOH . F 5 HOH A 31 431 29 HOH HOH . F 5 HOH A 32 432 116 HOH HOH . F 5 HOH A 33 433 184 HOH HOH . F 5 HOH A 34 434 36 HOH HOH . F 5 HOH A 35 435 26 HOH HOH . F 5 HOH A 36 436 19 HOH HOH . F 5 HOH A 37 437 58 HOH HOH . F 5 HOH A 38 438 99 HOH HOH . F 5 HOH A 39 439 187 HOH HOH . F 5 HOH A 40 440 6 HOH HOH . F 5 HOH A 41 441 150 HOH HOH . F 5 HOH A 42 442 188 HOH HOH . F 5 HOH A 43 443 15 HOH HOH . F 5 HOH A 44 444 14 HOH HOH . F 5 HOH A 45 445 274 HOH HOH . F 5 HOH A 46 446 43 HOH HOH . F 5 HOH A 47 447 137 HOH HOH . F 5 HOH A 48 448 5 HOH HOH . F 5 HOH A 49 449 266 HOH HOH . F 5 HOH A 50 450 232 HOH HOH . F 5 HOH A 51 451 85 HOH HOH . F 5 HOH A 52 452 57 HOH HOH . F 5 HOH A 53 453 258 HOH HOH . F 5 HOH A 54 454 229 HOH HOH . F 5 HOH A 55 455 49 HOH HOH . F 5 HOH A 56 456 225 HOH HOH . F 5 HOH A 57 457 11 HOH HOH . F 5 HOH A 58 458 7 HOH HOH . F 5 HOH A 59 459 92 HOH HOH . F 5 HOH A 60 460 128 HOH HOH . F 5 HOH A 61 461 3 HOH HOH . F 5 HOH A 62 462 46 HOH HOH . F 5 HOH A 63 463 138 HOH HOH . F 5 HOH A 64 464 33 HOH HOH . F 5 HOH A 65 465 155 HOH HOH . F 5 HOH A 66 466 59 HOH HOH . F 5 HOH A 67 467 144 HOH HOH . F 5 HOH A 68 468 159 HOH HOH . F 5 HOH A 69 469 47 HOH HOH . F 5 HOH A 70 470 25 HOH HOH . F 5 HOH A 71 471 177 HOH HOH . F 5 HOH A 72 472 69 HOH HOH . F 5 HOH A 73 473 202 HOH HOH . F 5 HOH A 74 474 37 HOH HOH . F 5 HOH A 75 475 125 HOH HOH . F 5 HOH A 76 476 40 HOH HOH . F 5 HOH A 77 477 112 HOH HOH . F 5 HOH A 78 478 286 HOH HOH . F 5 HOH A 79 479 140 HOH HOH . F 5 HOH A 80 480 18 HOH HOH . F 5 HOH A 81 481 94 HOH HOH . F 5 HOH A 82 482 72 HOH HOH . F 5 HOH A 83 483 123 HOH HOH . F 5 HOH A 84 484 127 HOH HOH . F 5 HOH A 85 485 96 HOH HOH . F 5 HOH A 86 486 200 HOH HOH . F 5 HOH A 87 487 129 HOH HOH . F 5 HOH A 88 488 65 HOH HOH . F 5 HOH A 89 489 160 HOH HOH . F 5 HOH A 90 490 71 HOH HOH . F 5 HOH A 91 491 45 HOH HOH . F 5 HOH A 92 492 109 HOH HOH . F 5 HOH A 93 493 22 HOH HOH . F 5 HOH A 94 494 285 HOH HOH . F 5 HOH A 95 495 41 HOH HOH . F 5 HOH A 96 496 16 HOH HOH . F 5 HOH A 97 497 163 HOH HOH . F 5 HOH A 98 498 2 HOH HOH . F 5 HOH A 99 499 50 HOH HOH . F 5 HOH A 100 500 104 HOH HOH . F 5 HOH A 101 501 108 HOH HOH . F 5 HOH A 102 502 176 HOH HOH . F 5 HOH A 103 503 76 HOH HOH . F 5 HOH A 104 504 248 HOH HOH . F 5 HOH A 105 505 81 HOH HOH . F 5 HOH A 106 506 34 HOH HOH . F 5 HOH A 107 507 147 HOH HOH . F 5 HOH A 108 508 101 HOH HOH . F 5 HOH A 109 509 51 HOH HOH . F 5 HOH A 110 510 153 HOH HOH . F 5 HOH A 111 511 284 HOH HOH . F 5 HOH A 112 512 12 HOH HOH . F 5 HOH A 113 513 8 HOH HOH . F 5 HOH A 114 514 203 HOH HOH . F 5 HOH A 115 515 17 HOH HOH . F 5 HOH A 116 516 235 HOH HOH . F 5 HOH A 117 517 35 HOH HOH . F 5 HOH A 118 518 100 HOH HOH . F 5 HOH A 119 519 53 HOH HOH . F 5 HOH A 120 520 249 HOH HOH . F 5 HOH A 121 521 31 HOH HOH . F 5 HOH A 122 522 39 HOH HOH . F 5 HOH A 123 523 221 HOH HOH . F 5 HOH A 124 524 121 HOH HOH . F 5 HOH A 125 525 115 HOH HOH . F 5 HOH A 126 526 23 HOH HOH . F 5 HOH A 127 527 63 HOH HOH . F 5 HOH A 128 528 27 HOH HOH . F 5 HOH A 129 529 32 HOH HOH . F 5 HOH A 130 530 175 HOH HOH . F 5 HOH A 131 531 233 HOH HOH . F 5 HOH A 132 532 66 HOH HOH . F 5 HOH A 133 533 171 HOH HOH . F 5 HOH A 134 534 88 HOH HOH . F 5 HOH A 135 535 13 HOH HOH . F 5 HOH A 136 536 9 HOH HOH . F 5 HOH A 137 537 204 HOH HOH . F 5 HOH A 138 538 124 HOH HOH . F 5 HOH A 139 539 91 HOH HOH . F 5 HOH A 140 540 208 HOH HOH . F 5 HOH A 141 541 114 HOH HOH . F 5 HOH A 142 542 149 HOH HOH . F 5 HOH A 143 543 181 HOH HOH . F 5 HOH A 144 544 10 HOH HOH . F 5 HOH A 145 545 265 HOH HOH . F 5 HOH A 146 546 238 HOH HOH . F 5 HOH A 147 547 55 HOH HOH . F 5 HOH A 148 548 148 HOH HOH . F 5 HOH A 149 549 259 HOH HOH . F 5 HOH A 150 550 28 HOH HOH . F 5 HOH A 151 551 145 HOH HOH . F 5 HOH A 152 552 134 HOH HOH . F 5 HOH A 153 553 118 HOH HOH . F 5 HOH A 154 554 113 HOH HOH . F 5 HOH A 155 555 146 HOH HOH . F 5 HOH A 156 556 62 HOH HOH . F 5 HOH A 157 557 83 HOH HOH . F 5 HOH A 158 558 250 HOH HOH . F 5 HOH A 159 559 80 HOH HOH . F 5 HOH A 160 560 172 HOH HOH . F 5 HOH A 161 561 193 HOH HOH . F 5 HOH A 162 562 89 HOH HOH . F 5 HOH A 163 563 272 HOH HOH . F 5 HOH A 164 564 30 HOH HOH . F 5 HOH A 165 565 256 HOH HOH . F 5 HOH A 166 566 260 HOH HOH . F 5 HOH A 167 567 24 HOH HOH . F 5 HOH A 168 568 79 HOH HOH . F 5 HOH A 169 569 254 HOH HOH . F 5 HOH A 170 570 132 HOH HOH . F 5 HOH A 171 571 75 HOH HOH . F 5 HOH A 172 572 217 HOH HOH . F 5 HOH A 173 573 21 HOH HOH . F 5 HOH A 174 574 209 HOH HOH . F 5 HOH A 175 575 98 HOH HOH . F 5 HOH A 176 576 182 HOH HOH . F 5 HOH A 177 577 130 HOH HOH . F 5 HOH A 178 578 170 HOH HOH . F 5 HOH A 179 579 143 HOH HOH . F 5 HOH A 180 580 52 HOH HOH . F 5 HOH A 181 581 70 HOH HOH . F 5 HOH A 182 582 87 HOH HOH . F 5 HOH A 183 583 220 HOH HOH . F 5 HOH A 184 584 268 HOH HOH . F 5 HOH A 185 585 42 HOH HOH . F 5 HOH A 186 586 74 HOH HOH . F 5 HOH A 187 587 1 HOH HOH . F 5 HOH A 188 588 277 HOH HOH . F 5 HOH A 189 589 231 HOH HOH . F 5 HOH A 190 590 73 HOH HOH . F 5 HOH A 191 591 237 HOH HOH . F 5 HOH A 192 592 269 HOH HOH . F 5 HOH A 193 593 106 HOH HOH . F 5 HOH A 194 594 278 HOH HOH . F 5 HOH A 195 595 279 HOH HOH . F 5 HOH A 196 596 242 HOH HOH . F 5 HOH A 197 597 251 HOH HOH . F 5 HOH A 198 598 276 HOH HOH . F 5 HOH A 199 599 180 HOH HOH . F 5 HOH A 200 600 247 HOH HOH . F 5 HOH A 201 601 64 HOH HOH . F 5 HOH A 202 602 224 HOH HOH . F 5 HOH A 203 603 206 HOH HOH . F 5 HOH A 204 604 222 HOH HOH . F 5 HOH A 205 605 154 HOH HOH . F 5 HOH A 206 606 230 HOH HOH . F 5 HOH A 207 607 226 HOH HOH . F 5 HOH A 208 608 4 HOH HOH . F 5 HOH A 209 609 270 HOH HOH . F 5 HOH A 210 610 244 HOH HOH . F 5 HOH A 211 611 119 HOH HOH . F 5 HOH A 212 612 60 HOH HOH . F 5 HOH A 213 613 255 HOH HOH . F 5 HOH A 214 614 219 HOH HOH . F 5 HOH A 215 615 275 HOH HOH . F 5 HOH A 216 616 82 HOH HOH . F 5 HOH A 217 617 189 HOH HOH . F 5 HOH A 218 618 166 HOH HOH . F 5 HOH A 219 619 90 HOH HOH . F 5 HOH A 220 620 283 HOH HOH . F 5 HOH A 221 621 280 HOH HOH . F 5 HOH A 222 622 174 HOH HOH . F 5 HOH A 223 623 136 HOH HOH . F 5 HOH A 224 624 67 HOH HOH . F 5 HOH A 225 625 173 HOH HOH . F 5 HOH A 226 626 117 HOH HOH . F 5 HOH A 227 627 167 HOH HOH . F 5 HOH A 228 628 178 HOH HOH . F 5 HOH A 229 629 263 HOH HOH . F 5 HOH A 230 630 194 HOH HOH . F 5 HOH A 231 631 152 HOH HOH . F 5 HOH A 232 632 191 HOH HOH . F 5 HOH A 233 633 185 HOH HOH . F 5 HOH A 234 634 126 HOH HOH . F 5 HOH A 235 635 103 HOH HOH . F 5 HOH A 236 636 201 HOH HOH . F 5 HOH A 237 637 156 HOH HOH . F 5 HOH A 238 638 218 HOH HOH . F 5 HOH A 239 639 190 HOH HOH . F 5 HOH A 240 640 48 HOH HOH . F 5 HOH A 241 641 281 HOH HOH . F 5 HOH A 242 642 227 HOH HOH . F 5 HOH A 243 643 186 HOH HOH . F 5 HOH A 244 644 261 HOH HOH . F 5 HOH A 245 645 139 HOH HOH . F 5 HOH A 246 646 68 HOH HOH . F 5 HOH A 247 647 164 HOH HOH . F 5 HOH A 248 648 213 HOH HOH . F 5 HOH A 249 649 273 HOH HOH . F 5 HOH A 250 650 257 HOH HOH . F 5 HOH A 251 651 240 HOH HOH . F 5 HOH A 252 652 142 HOH HOH . F 5 HOH A 253 653 215 HOH HOH . F 5 HOH A 254 654 246 HOH HOH . F 5 HOH A 255 655 198 HOH HOH . F 5 HOH A 256 656 241 HOH HOH . F 5 HOH A 257 657 131 HOH HOH . F 5 HOH A 258 658 228 HOH HOH . F 5 HOH A 259 659 107 HOH HOH . F 5 HOH A 260 660 95 HOH HOH . F 5 HOH A 261 661 205 HOH HOH . F 5 HOH A 262 662 84 HOH HOH . F 5 HOH A 263 663 161 HOH HOH . F 5 HOH A 264 664 77 HOH HOH . F 5 HOH A 265 665 133 HOH HOH . F 5 HOH A 266 666 54 HOH HOH . F 5 HOH A 267 667 282 HOH HOH . F 5 HOH A 268 668 97 HOH HOH . F 5 HOH A 269 669 197 HOH HOH . F 5 HOH A 270 670 245 HOH HOH . F 5 HOH A 271 671 216 HOH HOH . F 5 HOH A 272 672 199 HOH HOH . F 5 HOH A 273 673 179 HOH HOH . F 5 HOH A 274 674 110 HOH HOH . F 5 HOH A 275 675 195 HOH HOH . F 5 HOH A 276 676 271 HOH HOH . F 5 HOH A 277 677 239 HOH HOH . F 5 HOH A 278 678 243 HOH HOH . F 5 HOH A 279 679 183 HOH HOH . F 5 HOH A 280 680 135 HOH HOH . F 5 HOH A 281 681 157 HOH HOH . F 5 HOH A 282 682 168 HOH HOH . F 5 HOH A 283 683 158 HOH HOH . F 5 HOH A 284 684 169 HOH HOH . F 5 HOH A 285 685 212 HOH HOH . F 5 HOH A 286 686 262 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id A _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -24.397 _atom_site.Cartn_y -7.641 _atom_site.Cartn_z 13.667 _atom_site.occupancy 0.93 _atom_site.B_iso_or_equiv 12.87 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 119 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #