data_8PH6 # _model_server_result.job_id odk7x_4hDfAYjqzXW30siQ _model_server_result.datetime_utc '2024-11-24 17:21:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ph6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 8PH6 # _exptl.entry_id 8PH6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8PH6 _cell.length_a 76.88 _cell.length_b 76.88 _cell.length_c 38.61 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PH6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc1 A OD1 ASP 101 A ASP 101 1_555 C RU1 ZWL . A ZWL 202 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.981 ? metalc ? metalc2 A OD2 ASP 101 A ASP 101 1_555 C RU2 ZWL . A ZWL 202 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.101 ? metalc ? metalc3 A OD1 ASP 119 A ASP 119 1_555 D RU1 YWV . A YWV 203 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.02 ? metalc ? metalc4 A OD2 ASP 119 A ASP 119 1_555 D RU2 YWV . A YWV 203 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.186 ? metalc ? metalc5 A NH1 ARG 125 A ARG 125 1_555 D RU2 YWV . A YWV 203 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.25 ? metalc ? metalc6 A NH2 ARG 125 A ARG 125 1_555 D RU1 YWV . A YWV 203 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.938 ? metalc ? metalc7 C RU2 ZWL . A ZWL 202 1_555 G O HOH . A HOH 354 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.347 ? metalc ? metalc8 D RU1 YWV . A YWV 203 1_555 F O8 ZXE . A ZXE 205 4_445 ? A ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc9 D RU2 YWV . A YWV 203 1_555 G O HOH . A HOH 429 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc10 E RU2 ZWO . A ZWO 204 1_555 G O HOH . A HOH 348 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc11 F RU2 ZXE . A ZXE 205 1_555 G O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 83 n n N1 C6 EPE sing 84 n n N1 C9 EPE sing 85 n n C2 C3 EPE sing 86 n n C2 H21 EPE sing 87 n n C2 H22 EPE sing 88 n n C3 N4 EPE sing 89 n n C3 H31 EPE sing 90 n n C3 H32 EPE sing 91 n n N4 C5 EPE sing 92 n n N4 C7 EPE sing 93 n n C5 C6 EPE sing 94 n n C5 H51 EPE sing 95 n n C5 H52 EPE sing 96 n n C6 H61 EPE sing 97 n n C6 H62 EPE sing 98 n n C7 C8 EPE sing 99 n n C7 H71 EPE sing 100 n n C7 H72 EPE sing 101 n n C8 O8 EPE sing 102 n n C8 H81 EPE sing 103 n n C8 H82 EPE sing 104 n n O8 HO8 EPE sing 105 n n C9 C10 EPE sing 106 n n C9 H91 EPE sing 107 n n C9 H92 EPE sing 108 n n C10 S EPE sing 109 n n C10 H101 EPE sing 110 n n C10 H102 EPE sing 111 n n S O1S EPE doub 112 n n S O2S EPE doub 113 n n S O3S EPE sing 114 n n O3S HOS3 EPE sing 115 n n # _atom_sites.entry_id 8PH6 _atom_sites.fract_transf_matrix[1][1] 0.013007 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013007 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0259 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EPE A 1 201 202 EPE EPE . C 3 ZWL A 1 202 1 ZWL TMW . D 4 YWV A 1 203 2 YWV TMW . E 5 ZWO A 1 204 3 ZWO TMW . F 6 ZXE A 1 205 4 ZXE TMW . G 7 HOH A 1 301 169 HOH HOH . G 7 HOH A 2 302 143 HOH HOH . G 7 HOH A 3 303 124 HOH HOH . G 7 HOH A 4 304 221 HOH HOH . G 7 HOH A 5 305 168 HOH HOH . G 7 HOH A 6 306 86 HOH HOH . G 7 HOH A 7 307 71 HOH HOH . G 7 HOH A 8 308 173 HOH HOH . G 7 HOH A 9 309 157 HOH HOH . G 7 HOH A 10 310 195 HOH HOH . G 7 HOH A 11 311 11 HOH HOH . G 7 HOH A 12 312 64 HOH HOH . G 7 HOH A 13 313 39 HOH HOH . G 7 HOH A 14 314 33 HOH HOH . G 7 HOH A 15 315 58 HOH HOH . G 7 HOH A 16 316 220 HOH HOH . G 7 HOH A 17 317 49 HOH HOH . G 7 HOH A 18 318 117 HOH HOH . G 7 HOH A 19 319 201 HOH HOH . G 7 HOH A 20 320 87 HOH HOH . G 7 HOH A 21 321 46 HOH HOH . G 7 HOH A 22 322 174 HOH HOH . G 7 HOH A 23 323 70 HOH HOH . G 7 HOH A 24 324 154 HOH HOH . G 7 HOH A 25 325 193 HOH HOH . G 7 HOH A 26 326 81 HOH HOH . G 7 HOH A 27 327 110 HOH HOH . G 7 HOH A 28 328 112 HOH HOH . G 7 HOH A 29 329 223 HOH HOH . G 7 HOH A 30 330 25 HOH HOH . G 7 HOH A 31 331 89 HOH HOH . G 7 HOH A 32 332 22 HOH HOH . G 7 HOH A 33 333 60 HOH HOH . G 7 HOH A 34 334 2 HOH HOH . G 7 HOH A 35 335 57 HOH HOH . G 7 HOH A 36 336 187 HOH HOH . G 7 HOH A 37 337 13 HOH HOH . G 7 HOH A 38 338 73 HOH HOH . G 7 HOH A 39 339 150 HOH HOH . G 7 HOH A 40 340 53 HOH HOH . G 7 HOH A 41 341 3 HOH HOH . G 7 HOH A 42 342 99 HOH HOH . G 7 HOH A 43 343 91 HOH HOH . G 7 HOH A 44 344 72 HOH HOH . G 7 HOH A 45 345 186 HOH HOH . G 7 HOH A 46 346 104 HOH HOH . G 7 HOH A 47 347 32 HOH HOH . G 7 HOH A 48 348 123 HOH HOH . G 7 HOH A 49 349 126 HOH HOH . G 7 HOH A 50 350 204 HOH HOH . G 7 HOH A 51 351 148 HOH HOH . G 7 HOH A 52 352 202 HOH HOH . G 7 HOH A 53 353 165 HOH HOH . G 7 HOH A 54 354 181 HOH HOH . G 7 HOH A 55 355 36 HOH HOH . G 7 HOH A 56 356 93 HOH HOH . G 7 HOH A 57 357 34 HOH HOH . G 7 HOH A 58 358 120 HOH HOH . G 7 HOH A 59 359 8 HOH HOH . G 7 HOH A 60 360 167 HOH HOH . G 7 HOH A 61 361 147 HOH HOH . G 7 HOH A 62 362 12 HOH HOH . G 7 HOH A 63 363 4 HOH HOH . G 7 HOH A 64 364 105 HOH HOH . G 7 HOH A 65 365 65 HOH HOH . G 7 HOH A 66 366 156 HOH HOH . G 7 HOH A 67 367 138 HOH HOH . G 7 HOH A 68 368 54 HOH HOH . G 7 HOH A 69 369 19 HOH HOH . G 7 HOH A 70 370 211 HOH HOH . G 7 HOH A 71 371 102 HOH HOH . G 7 HOH A 72 372 24 HOH HOH . G 7 HOH A 73 373 59 HOH HOH . G 7 HOH A 74 374 45 HOH HOH . G 7 HOH A 75 375 77 HOH HOH . G 7 HOH A 76 376 98 HOH HOH . G 7 HOH A 77 377 134 HOH HOH . G 7 HOH A 78 378 44 HOH HOH . G 7 HOH A 79 379 114 HOH HOH . G 7 HOH A 80 380 109 HOH HOH . G 7 HOH A 81 381 82 HOH HOH . G 7 HOH A 82 382 106 HOH HOH . G 7 HOH A 83 383 200 HOH HOH . G 7 HOH A 84 384 218 HOH HOH . G 7 HOH A 85 385 63 HOH HOH . G 7 HOH A 86 386 55 HOH HOH . G 7 HOH A 87 387 189 HOH HOH . G 7 HOH A 88 388 142 HOH HOH . G 7 HOH A 89 389 30 HOH HOH . G 7 HOH A 90 390 31 HOH HOH . G 7 HOH A 91 391 163 HOH HOH . G 7 HOH A 92 392 40 HOH HOH . G 7 HOH A 93 393 27 HOH HOH . G 7 HOH A 94 394 10 HOH HOH . G 7 HOH A 95 395 7 HOH HOH . G 7 HOH A 96 396 14 HOH HOH . G 7 HOH A 97 397 26 HOH HOH . G 7 HOH A 98 398 184 HOH HOH . G 7 HOH A 99 399 52 HOH HOH . G 7 HOH A 100 400 37 HOH HOH . G 7 HOH A 101 401 144 HOH HOH . G 7 HOH A 102 402 6 HOH HOH . G 7 HOH A 103 403 146 HOH HOH . G 7 HOH A 104 404 23 HOH HOH . G 7 HOH A 105 405 161 HOH HOH . G 7 HOH A 106 406 29 HOH HOH . G 7 HOH A 107 407 188 HOH HOH . G 7 HOH A 108 408 121 HOH HOH . G 7 HOH A 109 409 170 HOH HOH . G 7 HOH A 110 410 190 HOH HOH . G 7 HOH A 111 411 171 HOH HOH . G 7 HOH A 112 412 18 HOH HOH . G 7 HOH A 113 413 196 HOH HOH . G 7 HOH A 114 414 67 HOH HOH . G 7 HOH A 115 415 78 HOH HOH . G 7 HOH A 116 416 28 HOH HOH . G 7 HOH A 117 417 203 HOH HOH . G 7 HOH A 118 418 133 HOH HOH . G 7 HOH A 119 419 75 HOH HOH . G 7 HOH A 120 420 50 HOH HOH . G 7 HOH A 121 421 15 HOH HOH . G 7 HOH A 122 422 145 HOH HOH . G 7 HOH A 123 423 42 HOH HOH . G 7 HOH A 124 424 175 HOH HOH . G 7 HOH A 125 425 131 HOH HOH . G 7 HOH A 126 426 43 HOH HOH . G 7 HOH A 127 427 216 HOH HOH . G 7 HOH A 128 428 76 HOH HOH . G 7 HOH A 129 429 122 HOH HOH . G 7 HOH A 130 430 108 HOH HOH . G 7 HOH A 131 431 160 HOH HOH . G 7 HOH A 132 432 162 HOH HOH . G 7 HOH A 133 433 185 HOH HOH . G 7 HOH A 134 434 191 HOH HOH . G 7 HOH A 135 435 139 HOH HOH . G 7 HOH A 136 436 74 HOH HOH . G 7 HOH A 137 437 107 HOH HOH . G 7 HOH A 138 438 62 HOH HOH . G 7 HOH A 139 439 85 HOH HOH . G 7 HOH A 140 440 84 HOH HOH . G 7 HOH A 141 441 136 HOH HOH . G 7 HOH A 142 442 155 HOH HOH . G 7 HOH A 143 443 94 HOH HOH . G 7 HOH A 144 444 149 HOH HOH . G 7 HOH A 145 445 88 HOH HOH . G 7 HOH A 146 446 182 HOH HOH . G 7 HOH A 147 447 180 HOH HOH . G 7 HOH A 148 448 225 HOH HOH . G 7 HOH A 149 449 113 HOH HOH . G 7 HOH A 150 450 152 HOH HOH . G 7 HOH A 151 451 80 HOH HOH . G 7 HOH A 152 452 130 HOH HOH . G 7 HOH A 153 453 224 HOH HOH . G 7 HOH A 154 454 68 HOH HOH . G 7 HOH A 155 455 222 HOH HOH . G 7 HOH A 156 456 214 HOH HOH . G 7 HOH A 157 457 197 HOH HOH . G 7 HOH A 158 458 226 HOH HOH . G 7 HOH A 159 459 101 HOH HOH . G 7 HOH A 160 460 153 HOH HOH . G 7 HOH A 161 461 96 HOH HOH . G 7 HOH A 162 462 41 HOH HOH . G 7 HOH A 163 463 95 HOH HOH . G 7 HOH A 164 464 177 HOH HOH . G 7 HOH A 165 465 66 HOH HOH . G 7 HOH A 166 466 199 HOH HOH . G 7 HOH A 167 467 97 HOH HOH . G 7 HOH A 168 468 158 HOH HOH . G 7 HOH A 169 469 164 HOH HOH . G 7 HOH A 170 470 183 HOH HOH . G 7 HOH A 171 471 151 HOH HOH . G 7 HOH A 172 472 194 HOH HOH . G 7 HOH A 173 473 212 HOH HOH . G 7 HOH A 174 474 79 HOH HOH . G 7 HOH A 175 475 118 HOH HOH . G 7 HOH A 176 476 176 HOH HOH . G 7 HOH A 177 477 116 HOH HOH . G 7 HOH A 178 478 192 HOH HOH . G 7 HOH A 179 479 140 HOH HOH . G 7 HOH A 180 480 208 HOH HOH . G 7 HOH A 181 481 207 HOH HOH . G 7 HOH A 182 482 92 HOH HOH . G 7 HOH A 183 483 198 HOH HOH . G 7 HOH A 184 484 61 HOH HOH . G 7 HOH A 185 485 35 HOH HOH . G 7 HOH A 186 486 137 HOH HOH . G 7 HOH A 187 487 135 HOH HOH . G 7 HOH A 188 488 159 HOH HOH . G 7 HOH A 189 489 100 HOH HOH . G 7 HOH A 190 490 111 HOH HOH . G 7 HOH A 191 491 166 HOH HOH . G 7 HOH A 192 492 209 HOH HOH . G 7 HOH A 193 493 205 HOH HOH . G 7 HOH A 194 494 56 HOH HOH . G 7 HOH A 195 495 206 HOH HOH . G 7 HOH A 196 496 132 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . B 2 -24.451 9.099 -4.202 0.6 11.97 0 N1 EPE 201 A 1 HETATM 2 C C2 EPE . . . B 2 -24.446 8.73 -5.628 0.6 11.21 0 C2 EPE 201 A 1 HETATM 3 C C3 EPE . . . B 2 -24.447 7.236 -5.824 0.6 10.4 0 C3 EPE 201 A 1 HETATM 4 N N4 EPE . . . B 2 -23.245 6.667 -5.173 0.6 10.43 0 N4 EPE 201 A 1 HETATM 5 C C5 EPE . . . B 2 -23.221 7.022 -3.74 0.6 12.39 0 C5 EPE 201 A 1 HETATM 6 C C6 EPE . . . B 2 -23.28 8.505 -3.529 0.6 12.55 0 C6 EPE 201 A 1 HETATM 7 C C7 EPE . . . B 2 -23.186 5.212 -5.349 0.6 10.1 0 C7 EPE 201 A 1 HETATM 8 C C8 EPE . . . B 2 -23.154 4.731 -6.774 0.6 10.12 0 C8 EPE 201 A 1 HETATM 9 O O8 EPE . . . B 2 -24.485 4.701 -7.288 0.6 8.44 0 O8 EPE 201 A 1 HETATM 10 C C9 EPE . . . B 2 -24.402 10.575 -4.01 0.6 12.39 0 C9 EPE 201 A 1 HETATM 11 C C10 EPE . . . B 2 -25.613 11.354 -4.48 0.6 14.55 0 C10 EPE 201 A 1 HETATM 12 S S EPE . . . B 2 -25.549 13.08 -4.043 0.6 15.29 0 S EPE 201 A 1 HETATM 13 O O1S EPE . . . B 2 -24.326 13.615 -4.585 0.6 14.89 0 O1S EPE 201 A 1 HETATM 14 O O2S EPE . . . B 2 -26.716 13.639 -4.657 0.6 16.4 0 O2S EPE 201 A 1 HETATM 15 O O3S EPE . . . B 2 -25.642 13.092 -2.531 0.6 18.7 0 O3S EPE 201 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #