data_8PH7
#
_model_server_result.job_id            Cu_uIhtSkNKQ8fjmljrmBg 
_model_server_result.datetime_utc      '2024-11-12 21:16:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ph7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    8PH7 
#
_exptl.entry_id    8PH7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              458.44 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "[Ru2(N,N'-bis(4-fluorophenyl)formamidinate)(1,1-ethanediol)" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8PH7 
_cell.length_a            77.67 
_cell.length_b            77.67 
_cell.length_c            38.28 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8PH7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? 
disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
metalc ? metalc1 A NZ LYS 33 A LYS 33 1_555 D RU1 ZWH . A ZWH 203 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.471 ? 
metalc ? metalc2 A O SER 60 A SER 60 1_555 E NA NA . A NA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? 
metalc ? metalc3 A O CYS 64 A CYS 64 1_555 E NA NA . A NA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? 
metalc ? metalc4 A OG SER 72 A SER 72 1_555 E NA NA . A NA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? 
metalc ? metalc5 A O ARG 73 A ARG 73 1_555 E NA NA . A NA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? 
metalc ? metalc6 A OD1 ASP 101 A ASP 101 1_555 B RU2 ZQ2 . A ZQ2 201 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.087 ? 
metalc ? metalc7 A OD1 ASP 101 A ASP 101 1_555 B RU1 ZQ2 . A ZQ2 201 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.575 ? 
metalc ? metalc8 B RU1 ZQ2 . A ZQ2 201 1_555 C O2 SIN . A SIN 202 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.709 ? 
metalc ? metalc9 B RU2 ZQ2 . A ZQ2 201 1_555 F O HOH . A HOH 305 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.615 ? 
metalc ? metalc10 D RU2 ZWH . A ZWH 203 1_555 F O HOH . A HOH 303 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.062 ? 
metalc ? metalc11 E NA NA . A NA 204 1_555 F O HOH . A HOH 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? 
metalc ? metalc12 E NA NA . A NA 204 1_555 F O HOH . A HOH 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
#
_chem_comp.formula           'C15 H16 N2 O2 Ru2' 
_chem_comp.formula_weight    458.44 
_chem_comp.id                ZQ2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "[Ru2(N,N'-bis(4-fluorophenyl)formamidinate)(1,1-ethanediol)" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     3-methyl-6,8-diphenyl-2,4-dioxa-6,8-diaza-1$l^{3},5$l^{3}-diruthenabicyclo[3.3.0]octane 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C19 C18 ZQ2 sing 389 n n 
C10 C9 ZQ2 doub 390 n y 
C10 C11 ZQ2 sing 391 n y 
C18 O6 ZQ2 sing 392 n n 
C18 O5 ZQ2 sing 393 n n 
C9 C8 ZQ2 sing 394 n y 
O6 RU2 ZQ2 sing 395 n n 
O5 RU1 ZQ2 sing 396 n n 
RU2 RU1 ZQ2 sing 397 n n 
RU2 N2 ZQ2 sing 398 n n 
C5 C6 ZQ2 doub 399 n y 
C5 C4 ZQ2 sing 400 n y 
C6 C7 ZQ2 sing 401 n y 
C11 C12 ZQ2 doub 402 n y 
C4 C3 ZQ2 doub 403 n y 
RU1 N1 ZQ2 sing 404 n n 
C7 C2 ZQ2 doub 405 n y 
C8 N2 ZQ2 sing 406 n n 
C8 C13 ZQ2 doub 407 n y 
C3 C2 ZQ2 sing 408 n y 
N2 C1 ZQ2 sing 409 n n 
C2 N1 ZQ2 sing 410 n n 
C1 N1 ZQ2 sing 411 n n 
C12 C13 ZQ2 sing 412 n y 
C11 H1 ZQ2 sing 413 n n 
C12 H2 ZQ2 sing 414 n n 
C13 H3 ZQ2 sing 415 n n 
C3 H4 ZQ2 sing 416 n n 
C4 H5 ZQ2 sing 417 n n 
C7 H6 ZQ2 sing 418 n n 
C18 H7 ZQ2 sing 419 n n 
C1 H8 ZQ2 sing 420 n n 
C6 H9 ZQ2 sing 421 n n 
C5 H10 ZQ2 sing 422 n n 
C10 H11 ZQ2 sing 423 n n 
C9 H12 ZQ2 sing 424 n n 
C19 H13 ZQ2 sing 425 n n 
C19 H14 ZQ2 sing 426 n n 
C19 H15 ZQ2 sing 427 n n 
C1 H16 ZQ2 sing 428 n n 
#
_atom_sites.entry_id                     8PH7 
_atom_sites.fract_transf_matrix[1][1]    0.012875 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012875 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026123 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZQ2 A 1 201 1 ZQ2 TM5 . 
C 3 SIN A 1 202 5 SIN SIN . 
D 4 ZWH A 1 203 2 ZWH TM5 . 
E 5 NA A 1 204 1 NA NA . 
F 6 HOH A 1 301 15 HOH HOH . 
F 6 HOH A 2 302 98 HOH HOH . 
F 6 HOH A 3 303 75 HOH HOH . 
F 6 HOH A 4 304 58 HOH HOH . 
F 6 HOH A 5 305 73 HOH HOH . 
F 6 HOH A 6 306 78 HOH HOH . 
F 6 HOH A 7 307 26 HOH HOH . 
F 6 HOH A 8 308 102 HOH HOH . 
F 6 HOH A 9 309 46 HOH HOH . 
F 6 HOH A 10 310 72 HOH HOH . 
F 6 HOH A 11 311 3 HOH HOH . 
F 6 HOH A 12 312 54 HOH HOH . 
F 6 HOH A 13 313 101 HOH HOH . 
F 6 HOH A 14 314 48 HOH HOH . 
F 6 HOH A 15 315 27 HOH HOH . 
F 6 HOH A 16 316 4 HOH HOH . 
F 6 HOH A 17 317 103 HOH HOH . 
F 6 HOH A 18 318 85 HOH HOH . 
F 6 HOH A 19 319 42 HOH HOH . 
F 6 HOH A 20 320 25 HOH HOH . 
F 6 HOH A 21 321 81 HOH HOH . 
F 6 HOH A 22 322 91 HOH HOH . 
F 6 HOH A 23 323 29 HOH HOH . 
F 6 HOH A 24 324 87 HOH HOH . 
F 6 HOH A 25 325 84 HOH HOH . 
F 6 HOH A 26 326 13 HOH HOH . 
F 6 HOH A 27 327 107 HOH HOH . 
F 6 HOH A 28 328 7 HOH HOH . 
F 6 HOH A 29 329 44 HOH HOH . 
F 6 HOH A 30 330 11 HOH HOH . 
F 6 HOH A 31 331 90 HOH HOH . 
F 6 HOH A 32 332 76 HOH HOH . 
F 6 HOH A 33 333 6 HOH HOH . 
F 6 HOH A 34 334 47 HOH HOH . 
F 6 HOH A 35 335 43 HOH HOH . 
F 6 HOH A 36 336 104 HOH HOH . 
F 6 HOH A 37 337 40 HOH HOH . 
F 6 HOH A 38 338 16 HOH HOH . 
F 6 HOH A 39 339 95 HOH HOH . 
F 6 HOH A 40 340 105 HOH HOH . 
F 6 HOH A 41 341 93 HOH HOH . 
F 6 HOH A 42 342 28 HOH HOH . 
F 6 HOH A 43 343 67 HOH HOH . 
F 6 HOH A 44 344 45 HOH HOH . 
F 6 HOH A 45 345 92 HOH HOH . 
F 6 HOH A 46 346 21 HOH HOH . 
F 6 HOH A 47 347 35 HOH HOH . 
F 6 HOH A 48 348 49 HOH HOH . 
F 6 HOH A 49 349 38 HOH HOH . 
F 6 HOH A 50 350 53 HOH HOH . 
F 6 HOH A 51 351 1 HOH HOH . 
F 6 HOH A 52 352 24 HOH HOH . 
F 6 HOH A 53 353 99 HOH HOH . 
F 6 HOH A 54 354 17 HOH HOH . 
F 6 HOH A 55 355 5 HOH HOH . 
F 6 HOH A 56 356 36 HOH HOH . 
F 6 HOH A 57 357 88 HOH HOH . 
F 6 HOH A 58 358 106 HOH HOH . 
F 6 HOH A 59 359 2 HOH HOH . 
F 6 HOH A 60 360 64 HOH HOH . 
F 6 HOH A 61 361 22 HOH HOH . 
F 6 HOH A 62 362 18 HOH HOH . 
F 6 HOH A 63 363 8 HOH HOH . 
F 6 HOH A 64 364 31 HOH HOH . 
F 6 HOH A 65 365 86 HOH HOH . 
F 6 HOH A 66 366 82 HOH HOH . 
F 6 HOH A 67 367 39 HOH HOH . 
F 6 HOH A 68 368 12 HOH HOH . 
F 6 HOH A 69 369 59 HOH HOH . 
F 6 HOH A 70 370 9 HOH HOH . 
F 6 HOH A 71 371 30 HOH HOH . 
F 6 HOH A 72 372 65 HOH HOH . 
F 6 HOH A 73 373 32 HOH HOH . 
F 6 HOH A 74 374 33 HOH HOH . 
F 6 HOH A 75 375 14 HOH HOH . 
F 6 HOH A 76 376 23 HOH HOH . 
F 6 HOH A 77 377 34 HOH HOH . 
F 6 HOH A 78 378 20 HOH HOH . 
F 6 HOH A 79 379 89 HOH HOH . 
F 6 HOH A 80 380 97 HOH HOH . 
F 6 HOH A 81 381 63 HOH HOH . 
F 6 HOH A 82 382 56 HOH HOH . 
F 6 HOH A 83 383 94 HOH HOH . 
F 6 HOH A 84 384 70 HOH HOH . 
F 6 HOH A 85 385 68 HOH HOH . 
F 6 HOH A 86 386 69 HOH HOH . 
F 6 HOH A 87 387 100 HOH HOH . 
F 6 HOH A 88 388 71 HOH HOH . 
F 6 HOH A 89 389 52 HOH HOH . 
F 6 HOH A 90 390 50 HOH HOH . 
F 6 HOH A 91 391 80 HOH HOH . 
F 6 HOH A 92 392 96 HOH HOH . 
F 6 HOH A 93 393 61 HOH HOH . 
F 6 HOH A 94 394 55 HOH HOH . 
F 6 HOH A 95 395 109 HOH HOH . 
F 6 HOH A 96 396 74 HOH HOH . 
F 6 HOH A 97 397 51 HOH HOH . 
F 6 HOH A 98 398 37 HOH HOH . 
F 6 HOH A 99 399 108 HOH HOH . 
F 6 HOH A 100 400 57 HOH HOH . 
F 6 HOH A 101 401 62 HOH HOH . 
F 6 HOH A 102 402 77 HOH HOH . 
F 6 HOH A 103 403 19 HOH HOH . 
F 6 HOH A 104 404 60 HOH HOH . 
F 6 HOH A 105 405 66 HOH HOH . 
F 6 HOH A 106 406 41 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C11 ZQ2 . A . B 2 -30.019 -2.725 8.055 0.4 27.66 0 C11 ZQ2 201 A 1 
HETATM 2 C C12 ZQ2 . A . B 2 -29.478 -2.777 9.301 0.4 26.55 0 C12 ZQ2 201 A 1 
HETATM 3 C C13 ZQ2 . A . B 2 -28.136 -2.961 9.445 0.4 25.07 0 C13 ZQ2 201 A 1 
HETATM 4 RU RU1 ZQ2 . A . B 2 -22.959 -3.89 8.315 0.4 37.48 0 RU1 ZQ2 201 A 1 
HETATM 5 RU RU2 ZQ2 . A . B 2 -24.398 -2.184 7.741 0.4 32.83 0 RU2 ZQ2 201 A 1 
HETATM 6 O O6 ZQ2 . A . B 2 -22.867 -0.97 7.154 0.4 34.89 0 O6 ZQ2 201 A 1 
HETATM 7 O O5 ZQ2 . A . B 2 -21.462 -2.629 7.631 0.4 33.53 0 O5 ZQ2 201 A 1 
HETATM 8 N N1 ZQ2 . A . B 2 -24.49 -5.122 8.785 0.4 33.21 0 N1 ZQ2 201 A 1 
HETATM 9 N N2 ZQ2 . A . B 2 -25.898 -3.287 8.494 0.4 28.76 0 N2 ZQ2 201 A 1 
HETATM 10 C C2 ZQ2 . A . B 2 -24.336 -6.513 8.495 0.4 36.11 0 C2 ZQ2 201 A 1 
HETATM 11 C C3 ZQ2 . A . B 2 -25.384 -7.42 8.398 0.4 36.61 0 C3 ZQ2 201 A 1 
HETATM 12 C C4 ZQ2 . A . B 2 -25.122 -8.758 8.116 0.4 38.41 0 C4 ZQ2 201 A 1 
HETATM 13 C C7 ZQ2 . A . B 2 -23.032 -6.961 8.312 0.4 36.99 0 C7 ZQ2 201 A 1 
HETATM 14 C C18 ZQ2 . A . B 2 -21.765 -1.55 7.012 0.4 32.77 0 C18 ZQ2 201 A 1 
HETATM 15 C C1 ZQ2 . A . B 2 -25.688 -4.584 8.715 0.4 31.53 0 C1 ZQ2 201 A 1 
HETATM 16 C C6 ZQ2 . A . B 2 -22.756 -8.274 8.038 0.4 37.05 0 C6 ZQ2 201 A 1 
HETATM 17 C C5 ZQ2 . A . B 2 -23.806 -9.14 7.946 0.4 38.13 0 C5 ZQ2 201 A 1 
HETATM 18 C C8 ZQ2 . A . B 2 -27.305 -3.053 8.347 0.4 25.67 0 C8 ZQ2 201 A 1 
HETATM 19 C C10 ZQ2 . A . B 2 -29.237 -2.847 6.959 0.4 26.85 0 C10 ZQ2 201 A 1 
HETATM 20 C C9 ZQ2 . A . B 2 -27.879 -3.01 7.085 0.4 23.98 0 C9 ZQ2 201 A 1 
HETATM 21 C C19 ZQ2 . A . B 2 -20.828 -0.913 6.045 0.4 32.38 0 C19 ZQ2 201 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           21 
#