data_8PI3
#
_model_server_result.job_id            wzXxEi6AoVIr6DNDUn-pbg 
_model_server_result.datetime_utc      '2025-01-16 07:59:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8pi3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":568}' 
#
_entry.id    8PI3 
#
_exptl.entry_id    8PI3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              106.12 
_entity.id                          8 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            DI(HYDROXYETHYL)ETHER 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8PI3 
_cell.length_a            87.706 
_cell.length_b            87.706 
_cell.length_c            69.436 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8PI3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        94 
_symmetry.space_group_name_Hall    'P 4n 2n' 
_symmetry.space_group_name_H-M     'P 42 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 8 Q N N 
? 8 T N N 
? 8 U N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 24 A CYS 136 1_555 A SG CYS 68 A CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
disulf ? disulf2 A SG CYS 58 A CYS 170 1_555 A SG CYS 101 A CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
disulf ? disulf3 A SG CYS 160 A CYS 272 1_555 A SG CYS 208 A CYS 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
covale ? covale1 B C ACE 1 B ACE 1 1_555 B N A1H5W 2 B A1H5W 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale2 B C A1H5W 2 B A1H5W 2 1_555 B N LYS 3 B LYS 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale3 B C MET 6 B MET 6 1_555 B N YWF 7 B YWF 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.291 ? 
covale ? covale4 B C YWF 7 B YWF 7 1_555 B N VAL 8 B VAL 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale5 B C TRP 10 B TRP 10 1_555 B N NH2 11 B NH2 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.289 ? 
metalc ? metalc1 A OE1 GLU 17 A GLU 129 1_555 L CD CD . A CD 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? 
metalc ? metalc2 A OE2 GLU 17 A GLU 129 1_555 L CD CD . A CD 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? 
metalc ? metalc3 A SG CYS 27 A CYS 139 1_555 I CD CD . A CD 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? 
metalc ? metalc4 A OD1 ASP 141 A ASP 253 1_555 K CD CD . A CD 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? 
metalc ? metalc5 A OD2 ASP 141 A ASP 253 1_555 K CD CD . A CD 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? 
metalc ? metalc6 A NE2 HIS 144 A HIS 256 1_555 K CD CD . A CD 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc7 A ND1 HIS 166 A HIS 278 1_555 I CD CD . A CD 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? 
metalc ? metalc8 A ND1 HIS 190 A HIS 302 1_555 J CD CD . A CD 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? 
metalc ? metalc9 A OE1 GLU 195 A GLU 307 1_555 J CD CD . A CD 410 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? 
metalc ? metalc10 A OE2 GLU 195 A GLU 307 1_555 J CD CD . A CD 410 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? 
metalc ? metalc11 I CD CD . A CD 409 1_555 W O HOH . A HOH 557 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? 
metalc ? metalc12 K CD CD . A CD 411 1_555 W O HOH . A HOH 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? 
metalc ? metalc13 L CD CD . A CD 412 1_555 W O HOH . A HOH 501 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? 
metalc ? metalc14 L CD CD . A CD 412 1_555 W O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? 
#
_chem_comp.formula           'C4 H10 O3' 
_chem_comp.formula_weight    106.12 
_chem_comp.id                PEG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DI(HYDROXYETHYL)ETHER 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PEG sing 288 n n 
C1 C2 PEG sing 289 n n 
C1 H11 PEG sing 290 n n 
C1 H12 PEG sing 291 n n 
O1 HO1 PEG sing 292 n n 
C2 O2 PEG sing 293 n n 
C2 H21 PEG sing 294 n n 
C2 H22 PEG sing 295 n n 
O2 C3 PEG sing 296 n n 
C3 C4 PEG sing 297 n n 
C3 H31 PEG sing 298 n n 
C3 H32 PEG sing 299 n n 
C4 O4 PEG sing 300 n n 
C4 H41 PEG sing 301 n n 
C4 H42 PEG sing 302 n n 
O4 HO4 PEG sing 303 n n 
#
_atom_sites.entry_id                     8PI3 
_atom_sites.fract_transf_matrix[1][1]    0.011402 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011402 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014402 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 CL A 1 401 401 CL CL . 
D 3 CL A 1 402 402 CL CL . 
E 3 CL A 1 403 403 CL CL . 
F 4 GOL A 1 405 405 GOL GOL . 
G 5 EDO A 1 406 406 EDO EDO . 
H 5 EDO A 1 407 407 EDO EDO . 
I 6 CD A 1 409 409 CD CD . 
J 6 CD A 1 410 410 CD CD . 
K 6 CD A 1 411 411 CD CD . 
L 6 CD A 1 412 412 CD CD . 
M 3 CL A 1 413 413 CL CL . 
N 7 ACT A 1 414 414 ACT ACT . 
O 5 EDO A 1 415 415 EDO EDO . 
P 7 ACT A 1 416 416 ACT ACT . 
Q 8 PEG A 1 417 417 PEG PEG . 
R 5 EDO A 1 420 420 EDO EDO . 
S 5 EDO A 1 566 566 EDO EDO . 
T 8 PEG A 1 567 567 PEG PEG . 
U 8 PEG A 1 568 568 PEG PEG . 
V 3 CL B 1 101 101 CL CL . 
W 9 HOH A 1 501 501 HOH HOH . 
W 9 HOH A 2 502 502 HOH HOH . 
W 9 HOH A 3 503 503 HOH HOH . 
W 9 HOH A 4 504 504 HOH HOH . 
W 9 HOH A 5 505 505 HOH HOH . 
W 9 HOH A 6 506 506 HOH HOH . 
W 9 HOH A 7 507 507 HOH HOH . 
W 9 HOH A 8 508 508 HOH HOH . 
W 9 HOH A 9 509 509 HOH HOH . 
W 9 HOH A 10 510 510 HOH HOH . 
W 9 HOH A 11 511 511 HOH HOH . 
W 9 HOH A 12 512 512 HOH HOH . 
W 9 HOH A 13 513 513 HOH HOH . 
W 9 HOH A 14 514 514 HOH HOH . 
W 9 HOH A 15 515 515 HOH HOH . 
W 9 HOH A 16 516 516 HOH HOH . 
W 9 HOH A 17 517 517 HOH HOH . 
W 9 HOH A 18 518 518 HOH HOH . 
W 9 HOH A 19 519 519 HOH HOH . 
W 9 HOH A 20 520 520 HOH HOH . 
W 9 HOH A 21 521 521 HOH HOH . 
W 9 HOH A 22 522 522 HOH HOH . 
W 9 HOH A 23 523 523 HOH HOH . 
W 9 HOH A 24 524 524 HOH HOH . 
W 9 HOH A 25 525 525 HOH HOH . 
W 9 HOH A 26 526 526 HOH HOH . 
W 9 HOH A 27 527 527 HOH HOH . 
W 9 HOH A 28 528 528 HOH HOH . 
W 9 HOH A 29 529 529 HOH HOH . 
W 9 HOH A 30 530 530 HOH HOH . 
W 9 HOH A 31 531 531 HOH HOH . 
W 9 HOH A 32 532 532 HOH HOH . 
W 9 HOH A 33 533 533 HOH HOH . 
W 9 HOH A 34 534 534 HOH HOH . 
W 9 HOH A 35 535 535 HOH HOH . 
W 9 HOH A 36 536 536 HOH HOH . 
W 9 HOH A 37 537 537 HOH HOH . 
W 9 HOH A 38 538 538 HOH HOH . 
W 9 HOH A 39 539 539 HOH HOH . 
W 9 HOH A 40 540 540 HOH HOH . 
W 9 HOH A 41 541 541 HOH HOH . 
W 9 HOH A 42 542 542 HOH HOH . 
W 9 HOH A 43 543 543 HOH HOH . 
W 9 HOH A 44 544 544 HOH HOH . 
W 9 HOH A 45 545 545 HOH HOH . 
W 9 HOH A 46 546 546 HOH HOH . 
W 9 HOH A 47 547 547 HOH HOH . 
W 9 HOH A 48 548 548 HOH HOH . 
W 9 HOH A 49 549 549 HOH HOH . 
W 9 HOH A 50 550 550 HOH HOH . 
W 9 HOH A 51 551 551 HOH HOH . 
W 9 HOH A 52 552 552 HOH HOH . 
W 9 HOH A 53 553 553 HOH HOH . 
W 9 HOH A 54 554 554 HOH HOH . 
W 9 HOH A 55 555 555 HOH HOH . 
W 9 HOH A 56 556 556 HOH HOH . 
W 9 HOH A 57 557 557 HOH HOH . 
W 9 HOH A 58 558 558 HOH HOH . 
W 9 HOH A 59 560 560 HOH HOH . 
W 9 HOH A 60 561 561 HOH HOH . 
W 9 HOH A 61 562 562 HOH HOH . 
W 9 HOH A 62 563 563 HOH HOH . 
W 9 HOH A 63 564 564 HOH HOH . 
W 9 HOH A 64 565 565 HOH HOH . 
X 9 HOH B 1 201 201 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PEG . . . U 8 13.385 14.912 -0.07 0.71 51.77 ? C1 PEG 568 A 1 
HETATM 2 O O1 PEG . . . U 8 14.719 14.433 -0.022 0.71 59.67 ? O1 PEG 568 A 1 
HETATM 3 C C2 PEG . . . U 8 12.868 15.163 1.325 0.71 46.69 ? C2 PEG 568 A 1 
HETATM 4 O O2 PEG . . . U 8 11.699 14.412 1.575 0.71 53.71 ? O2 PEG 568 A 1 
HETATM 5 C C3 PEG . . . U 8 11.982 13.125 2.057 0.71 45.76 ? C3 PEG 568 A 1 
HETATM 6 C C4 PEG . . . U 8 10.764 12.612 2.781 0.71 38.91 ? C4 PEG 568 A 1 
HETATM 7 O O4 PEG . . . U 8 11.167 11.957 3.975 0.71 32.87 ? O4 PEG 568 A 1 
HETATM 8 H H11 PEG . . . U 8 12.802 14.273 -0.509 0.71 62.16 ? H11 PEG 568 A 1 
HETATM 9 H H12 PEG . . . U 8 13.329 15.737 -0.577 0.71 62.16 ? H12 PEG 568 A 1 
HETATM 10 H HO1 PEG . . . U 8 14.707 13.657 0.325 0.71 71.64 ? HO1 PEG 568 A 1 
HETATM 11 H H21 PEG . . . U 8 12.701 16.114 1.42 0.71 56.07 ? H21 PEG 568 A 1 
HETATM 12 H H22 PEG . . . U 8 13.57 14.939 1.954 0.71 56.07 ? H22 PEG 568 A 1 
HETATM 13 H H31 PEG . . . U 8 12.743 13.14 2.657 0.71 54.95 ? H31 PEG 568 A 1 
HETATM 14 H H32 PEG . . . U 8 12.213 12.526 1.33 0.71 54.95 ? H32 PEG 568 A 1 
HETATM 15 H H41 PEG . . . U 8 10.288 12.021 2.176 0.71 46.73 ? H41 PEG 568 A 1 
HETATM 16 H H42 PEG . . . U 8 10.181 13.368 2.951 0.71 46.73 ? H42 PEG 568 A 1 
HETATM 17 H HO4 PEG . . . U 8 11.809 11.433 3.785 0.71 39.49 ? HO4 PEG 568 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           17 
#