data_8PIZ
#
_model_server_result.job_id            VGMp0G2ZlQx5AqENcpODsw 
_model_server_result.datetime_utc      '2024-10-18 06:19:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8piz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":202}' 
#
_entry.id    8PIZ 
#
_exptl.entry_id    8PIZ 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              246.26 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2,4-bisacetamido-2,4,6-trideoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8PIZ 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8PIZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 120 A CYS 120 1_555 A SG CYS 154 A CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 B SG CYS 24 B CYS 24 1_555 B SG CYS 98 B CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 B SG CYS 52 B CYS 52 1_555 B SG CYS 111 B CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
covale ? covale1 A OG SER 63 A SER 63 1_555 D C1 B6D . A B6D 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale2 A CB SER 69 A SER 69 1_555 C O4P G3P . A G3P 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.4 ? 
#
_chem_comp.formula           'C10 H18 N2 O5' 
_chem_comp.formula_weight    246.26 
_chem_comp.id                B6D 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2,4-bisacetamido-2,4,6-trideoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     2,4-bis(acetylamino)-2,4,6-trideoxy-beta-D-glucopyranose;2,4-diacetamido-2,4,6-trideoxy-beta-D-glucopyranose;bacillosamine;2,4-bisacetamido-2,4,6-trideoxy-beta-D-glucose;2,4-bisacetamido-2,4,6-trideoxy-D-glucose;2,4-bisacetamido-2,4,6-trideoxy-glucose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 B6D sing 70 n n 
C1 O1 B6D sing 71 n n 
N2 C7 B6D sing 72 n n 
C3 O3 B6D sing 73 n n 
C3 C2 B6D sing 74 n n 
C4 C3 B6D sing 75 n n 
C4 H4 B6D sing 76 n n 
C5 C4 B6D sing 77 n n 
C5 O5 B6D sing 78 n n 
C6 C5 B6D sing 79 n n 
C6 H61 B6D sing 80 n n 
C7 O7 B6D doub 81 n n 
C7 C8 B6D sing 82 n n 
C8 H81 B6D sing 83 n n 
C8 H82 B6D sing 84 n n 
C9 H9A B6D sing 85 n n 
C9 C10 B6D sing 86 n n 
C2 N2 B6D sing 87 n n 
C2 H2 B6D sing 88 n n 
N4 C4 B6D sing 89 n n 
C10 N4 B6D sing 90 n n 
C10 O10 B6D doub 91 n n 
O5 C1 B6D sing 92 n n 
O3 HO3 B6D sing 93 n n 
H1 C1 B6D sing 94 n n 
H3 C3 B6D sing 95 n n 
HN2 N2 B6D sing 96 n n 
H5 C5 B6D sing 97 n n 
H83 C8 B6D sing 98 n n 
HN4 N4 B6D sing 99 n n 
H9 C9 B6D sing 100 n n 
H9B C9 B6D sing 101 n n 
H62 C6 B6D sing 102 n n 
H6A C6 B6D sing 103 n n 
O1 HO1 B6D sing 104 n n 
#
_pdbx_chem_comp_identifier.comp_id            B6D 
_pdbx_chem_comp_identifier.identifier         b-D-6-deoxy-GlcpNAc4NAc 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     8PIZ 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 G3P A 1 201 162 G3P G3P . 
D 4 B6D A 1 202 163 B6D DAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 B6D . . . D 4 175.895 164.27 164.266 1 55.64 ? C1 B6D 202 A 1 
HETATM 2 N N2 B6D . . . D 4 174.248 164.305 166.131 1 52.55 ? N2 B6D 202 A 1 
HETATM 3 C C3 B6D . . . D 4 175.595 162.357 165.904 1 49.83 ? C3 B6D 202 A 1 
HETATM 4 C C4 B6D . . . D 4 176.554 161.556 165.039 1 45.88 ? C4 B6D 202 A 1 
HETATM 5 C C5 B6D . . . D 4 177.471 162.496 164.276 1 48.09 ? C5 B6D 202 A 1 
HETATM 6 C C6 B6D . . . D 4 178.433 161.703 163.402 1 51.96 ? C6 B6D 202 A 1 
HETATM 7 C C7 B6D . . . D 4 172.939 164.528 166.119 1 55.9 ? C7 B6D 202 A 1 
HETATM 8 C C8 B6D . . . D 4 172.431 165.458 167.18 1 53.77 ? C8 B6D 202 A 1 
HETATM 9 C C9 B6D . . . D 4 178.107 158.57 166.727 1 50.33 ? C9 B6D 202 A 1 
HETATM 10 C C2 B6D . . . D 4 174.904 163.479 165.134 1 50.63 ? C2 B6D 202 A 1 
HETATM 11 O O7 B6D . . . D 4 172.201 164.015 165.296 1 60.58 ? O7 B6D 202 A 1 
HETATM 12 N N4 B6D . . . D 4 177.339 160.671 165.873 1 51.95 ? N4 B6D 202 A 1 
HETATM 13 C C10 B6D . . . D 4 177.257 159.348 165.769 1 54.63 ? C10 B6D 202 A 1 
HETATM 14 O O10 B6D . . . D 4 176.537 158.804 164.949 1 58.87 ? O10 B6D 202 A 1 
HETATM 15 O O5 B6D . . . D 4 176.673 163.367 163.477 1 57.32 ? O5 B6D 202 A 1 
HETATM 16 O O3 B6D . . . D 4 174.603 161.478 166.447 1 57.64 ? O3 B6D 202 A 1 
#
_model_server_stats.io_time_ms              51 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           16 
#